BAC Information

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BAC

Clone NameB6Ng01-331C02
Chromosome16 (Build37)
Map Location 93,026,908 - 93,155,670
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C02.bB6Ng01-331C02.g
ACCGA117585GA117586
length1,0501,134
definitionB6Ng01-331C02.b B6Ng01-331C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,154,620 - 93,155,670)(93,026,908 - 93,028,023)
sequence
gaattccatgtctgagggaagaaaagaagggagagaaattaatgcacata
agtaaagaaagaaaaacggccactcttcttttagagaaattctctagtct
agggaagaccttcacctagaagaacttccttgtcctccagagtcatcttt
tagggaacggaagttaaaggaggtgtcccaggctctctgaggttacgatc
tccttggcttatttccagtccgtggggagagttaactgagaaaggcaggc
gtgccgtgagtgccttgtgggtctcagcagtgcactggatctgtcttctg
acagccatagttgagcagtgagcctgtccagtgtgagaggtggtttgttc
ttttgtatgatctaggggctgaagaaccacaggctgccgtagtcataggg
ccagagcctggagttgcaaagcagcaactccatccaggggaaggcagatg
ctagctctcagggcagcctgctcttggtggccatattgaaaaccagatgg
ggaagtgataaggcccagcattgtacagctgattggactgctgtcattgt
tcatcctcacaaatatcatctacaagtaacaataggaaccaatagttttt
gtggggttttactttttttttaaatgatggcctagggatagatcacggta
tttgagtaatggactagcatgtgtaaaacccaaggtttgcttcacatgca
cacacacatacacacacacacacacacacacacctactcaatatggatat
tttaggtggttgtttcttcaatgttttgttgtacaactgaaatccttttg
agggtgtcataacttactgcttctgcttggcttagaaaaagtcacatgat
agagtcagacaaccttttcatacactgaagtccctgcggtgagattaaat
agtacatggctgggtttcatataaagtgcaggttaatttttcagtaagag
tatgtccgtgtattgcttgggatatagcaagacgtagttcaacatttctc
gcaatttaattcgagtgagttgtacatgtctttattgtgcgtggctgggt

gaattccagccactgcagtaaggcaagaaaaataaacaaaaaagaattca
aatcgaacaggaagaaataaagccatccttctttgttaatgacgttcctg
tttacatacaagattcgggtagctagggcagagatggcttcagtgggtaa
aggtgcttgctgccaatcttgacggcccgagttcaattcccacacttaca
acctcctacaagttgttctatacacactatagcttgtagccgccaccccc
aatcccattaaataaataaatgcactaaagacaaaacctcagggaattat
acaaccataagaagcatacttctcagaaccaagtcaagtcagcaagcaga
gtagccatcggcataactaaagtacgaagctgggcagagtggccacaagc
atgactgacatacggagctcagaatttacccagatcacgagtggacagga
ggagacaatgattgcaaacacgagtttgaaggcctgagttcaatccttgg
gactcagtgtcccaagggacaggaatgccatggtatgtttgagcactgtg
tttacctacccacctctcctctttgtctctcccccaataatagtaataat
aataataataataataataataataataataataataataaatatatgtg
tgcttttaacaaaacaataggtagggcctgtattctgtatgctggaatta
taaaacatggatgaaatcacaaaatccaacttcaagaactcaacagctaa
attaagcaatagacatgtcctggaagactaagtatattaagtatcctggc
tagttcatttttttttttacttgacccaagttagagttatttgggaagag
ggactctaagttcagaaaatgccttccctaaaattggggctgtaggcaag
actgtagggcatttcctttagttagtgaacaatgggggggagggcctagt
ccactgtaggcagtgccctttcctggtggtccttgcggtgttgtaagaaa
aagctctaagccaagtcatatagtcagttagcctatgctccctccatgac
ctcctgcatcagttctgcctgcttgatcctgcctggagcctcttggccct
gactccctgatggtggatacaagccgtaagatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93154620_93155670
seq2: B6Ng01-331C02.b_42_1091 (reverse)

seq1  ACCCAGCTTACGCA-AATAAAGACATGGTAC-ACTCACTCGAATTTAAAT  48
      |||||||  ||||| ||||||||||| |||| |||||||||||||  || 
seq2  ACCCAGC-CACGCACAATAAAGACAT-GTACAACTCACTCGAATT--AAA  46

seq1  TTGAGAGAAATATTGAACTACATCTTGCTATATCCCAAGCAATACACGGA  98
      ||| ||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TTGCGAGAAATGTTGAACTACGTCTTGCTATATCCCAAGCAATACACGGA  96

seq1  CATACTTGTACTGAAAAATTAACCAGCAATTTATATGTAA-CCAGCCATC  147
      ||||||  |||||||||||||||| ||| |||||||| || |||||||| 
seq2  CATACTCTTACTGAAAAATTAACCTGCACTTTATATGAAACCCAGCCATG  146

seq1  TACTATTTAATCTCACCGCAGGGACTTCAGTGTATG-AAAGGTTGTCTGA  196
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACTATTTAATCTCACCGCAGGGACTTCAGTGTATGAAAAGGTTGTCTGA  196

seq1  CTCTTTCATGTGACTTTTTCTAAGCCAAGCAGAAGCAGTAAGTTATGACA  246
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCATGTGACTTTTTCTAAGCCAAGCAGAAGCAGTAAGTTATGACA  246

seq1  CCCTCAAAAGGATTTCAGTTGTACAACAAAACATTTGAAGAAACAACCAC  296
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCTCAAAAGGATTTCAGTTGTACAACAAAACA-TTGAAGAAACAACCAC  295

seq1  CTAAAATATCCATATTGAGTAGGTGTGTGTGTGTGTGTGTGTGTGTATGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATCCATATTGAGTAGGTGTGTGTGTGTGTGTGTGTGTGTATGT  345

seq1  GTGTGTGCATGTGAAGCAAACCTTGGGTTTTACACATGCTAGTCCATTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGTGAAGCAAACCTTGGGTTTTACACATGCTAGTCCATTAC  395

seq1  TCAAATACCGTGATCTATCCCTAGGCCATCATTTAAAAAAAAAGTAAAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATACCGTGATCTATCCCTAGGCCATCATTTAAAAAAAAAGTAAAAC  445

seq1  CCCACAAAAACTATTGGTTCCTATTGTTACTTGTAGATGATATTTGTGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAAACTATTGGTTCCTATTGTTACTTGTAGATGATATTTGTGAG  495

seq1  GATGAACAATGACAGCAGTCCAATCAGCTGTACAATGCTGGGCCTTATCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACAATGACAGCAGTCCAATCAGCTGTACAATGCTGGGCCTTATCA  545

seq1  CTTCCCCATCTGGTTTTCAATATGGCCACCAAGAGCAGGCTGCCCTGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCATCTGGTTTTCAATATGGCCACCAAGAGCAGGCTGCCCTGAGA  595

seq1  GCTAGCATCTGCCTTCCCCTGGATGGAGTTGCTGCTTTGCAACTCCAGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATCTGCCTTCCCCTGGATGGAGTTGCTGCTTTGCAACTCCAGGC  645

seq1  TCTGGCCCTATGACTACGGCAGCCTGTGGTTCTTCAGCCCCTAGATCATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCTATGACTACGGCAGCCTGTGGTTCTTCAGCCCCTAGATCATA  695

seq1  CAAAAGAACAAACCACCTCTCACACTGGACAGGCTCACTGCTCAACTATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAACAAACCACCTCTCACACTGGACAGGCTCACTGCTCAACTATG  745

seq1  GCTGTCAGAAGACAGATCCAGTGCACTGCTGAGACCCACAAGGCACTCAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGAAGACAGATCCAGTGCACTGCTGAGACCCACAAGGCACTCAC  795

seq1  GGCACGCCTGCCTTTCTCAGTTAACTCTCCCCACGGACTGGAAATAAGCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCCTGCCTTTCTCAGTTAACTCTCCCCACGGACTGGAAATAAGCC  845

seq1  AAGGAGATCGTAACCTCAGAGAGCCTGGGACACCTCCTTTAACTTCCGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCGTAACCTCAGAGAGCCTGGGACACCTCCTTTAACTTCCGTT  895

seq1  CCCTAAAAGATGACTCTGGAGGACAAGGAAGTTCTTCTAGGTGAAGGTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGATGACTCTGGAGGACAAGGAAGTTCTTCTAGGTGAAGGTCT  945

seq1  TCCCTAGACTAGAGAATTTCTCTAAAAGAAGAGTGGCCGTTTTTCTTTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGACTAGAGAATTTCTCTAAAAGAAGAGTGGCCGTTTTTCTTTCT  995

seq1  TTACTTATGTGCATTAATTTCTCTCCCTTCTTTTCTTCCCTCAGACATGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATGTGCATTAATTTCTCTCCCTTCTTTTCTTCCCTCAGACATGG  1045

seq1  AATTC  1051
      |||||
seq2  AATTC  1050

seq1: chr16_93026908_93028023
seq2: B6Ng01-331C02.g_65_1198

seq1  GAATTCCAGCCACTGCAGTAAGGCAAGAAAAATAAACAAAAAAGAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCACTGCAGTAAGGCAAGAAAAATAAACAAAAAAGAATTCA  50

seq1  AATCGAACAGGAAGAAATAAAGCCATCCTTCTTTGTTAATGACGTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAACAGGAAGAAATAAAGCCATCCTTCTTTGTTAATGACGTTCCTG  100

seq1  TTTACATACAAGATTCGGGTAGCTAGGGCAGAGATGGCTTCAGTGGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATACAAGATTCGGGTAGCTAGGGCAGAGATGGCTTCAGTGGGTAA  150

seq1  AGGTGCTTGCTGCCAATCTTGACGGCCCGAGTTCAATTCCCACACTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTTGCTGCCAATCTTGACGGCCCGAGTTCAATTCCCACACTTACA  200

seq1  ACCTCCTACAAGTTGTTCTATACACACTATAGCTTGTAGCCGCCACCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTACAAGTTGTTCTATACACACTATAGCTTGTAGCCGCCACCCCC  250

seq1  AATCCCATTAAATAAATAAATGCACTAAAGACAAAACCTCAGGGAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATTAAATAAATAAATGCACTAAAGACAAAACCTCAGGGAATTAT  300

seq1  ACAACCATAAGAAGCATACTTCTCAGAACCAAGTCAAGTCAGCAAGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATAAGAAGCATACTTCTCAGAACCAAGTCAAGTCAGCAAGCAGA  350

seq1  GTAGCCATCGGCATAACTAAAGTACGAAGCTGGGCAGAGTGGCCACAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATCGGCATAACTAAAGTACGAAGCTGGGCAGAGTGGCCACAAGC  400

seq1  ATGACTGACATACGGAGCTCAGAATTTACCCAGATCACGAGTGGACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGACATACGGAGCTCAGAATTTACCCAGATCACGAGTGGACAGGA  450

seq1  GGAGACAATGATTGCAAACACGAGTTTGAAGGCCTGAGTTCAATCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAATGATTGCAAACACGAGTTTGAAGGCCTGAGTTCAATCCTTGG  500

seq1  GACTCAGTGTCCCAAGGGACAGGAATGCCATGGTATGTTTGAGCACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTGTCCCAAGGGACAGGAATGCCATGGTATGTTTGAGCACTGTG  550

seq1  TTTACCTACCCACCTCTCCTCTTTGTCTCTCCCCCAATAATAG------T  594
      |||||||||||||||||||||||||||||||||||||||||||      |
seq2  TTTACCTACCCACCTCTCCTCTTTGTCTCTCCCCCAATAATAGTAATAAT  600

seq1  AATAATAATAATAATAATAATAATAATAATAATAATAATAAATATATGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATAATAATAATAATAATAATAATAATAAATATATGTG  650

seq1  TGCTTTTAACAAAACAATAGGTAGGGCCTGTATTCTGTATGCTGGAATTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAACAAAACAATAGGTAGGGCCTGTATTCTGTATGCTGGAATTA  700

seq1  TAAAACATGGATGAAATCACAAAATCCAACTTCAAGAACTCAACAGCTAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATGGATGAAATCACAAAATCCAACTTCAAGAACTCAACAGCTAA  750

seq1  ATTAAGCAATAGACATGTCCTGGAAGACTAAGTATATTAAGTATCCTGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCAATAGACATGTCCTGGAAGACTAAGTATATTAAGTATCCTGGC  800

seq1  TAGTTCA-TTTTTTTTTTACTTGACCCAAGTTAGAGTTATTTGGGAAGAG  843
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATTTTTTTTTTTACTTGACCCAAGTTAGAGTTATTTGGGAAGAG  850

seq1  GGACTCTAAGTTCAGAAAATGCCTTCCCTAAAATT-GGGCTGTAGGCAAG  892
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGACTCTAAGTTCAGAAAATGCCTTCCCTAAAATTGGGGCTGTAGGCAAG  900

seq1  ACTGTAGGGCATTTCC-TTAGTTAGTGAACAAT--GGGGGAGGGCCTAGT  939
      |||||||||||||||| ||||||||||||||||  |||||||||||||||
seq2  ACTGTAGGGCATTTCCTTTAGTTAGTGAACAATGGGGGGGAGGGCCTAGT  950

seq1  CCACTGTAGGCAGTGCCC-TTCCTGGTGGT-CTTGCGGTG-TGTAAG-AA  985
      |||||||||||||||||| ||||||||||| ||||||||| |||||| ||
seq2  CCACTGTAGGCAGTGCCCTTTCCTGGTGGTCCTTGCGGTGTTGTAAGAAA  1000

seq1  AAGC-CCAAG-CAAGTCATATAGTCAGTTAG-CTATGCT-CCTCCATGA-  1030
      |||| | ||| |||||||||||||||||||| ||||||| ||||||||| 
seq2  AAGCTCTAAGCCAAGTCATATAGTCAGTTAGCCTATGCTCCCTCCATGAC  1050

seq1  CTCCTGCATCAGTTTCTGCCTGCTGGTTCCTGCCTGGAG-CTCTTGG-CC  1078
      |||||||||||| ||||||||||| | |||||||||||| ||||||| ||
seq2  CTCCTGCATCAG-TTCTGCCTGCTTGATCCTGCCTGGAGCCTCTTGGCCC  1099

seq1  TGACTTCCCCTGATGGTGGGTTACAAGCAGTAAGATGA  1116
      |||||  |||||||||| || ||||||| |||||||||
seq2  TGACT--CCCTGATGGT-GGATACAAGCCGTAAGATGA  1134