BAC Information

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BAC

Clone NameB6Ng01-331F14
Chromosome17 (Build37)16 (Build37)
Map Location 25,167,157 - 25,167,6765,177,721 - 5,177,794
singlet/doubletsingletsinglet
Overlap geneIft140
Upstream genePrss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l
Downstream geneBC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331F14.bB6Ng01-331F14.g
ACCGA117738GA117739
length594154
definitionB6Ng01-331F14.b B6Ng01-331F14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,167,157 - 25,167,676)(5,177,721 - 5,177,794)
sequence
gaattctacgagttgcatgggcctgagccagcttgagccaacttgacaaa
tagccacttactatatagtttaaaaacagataggtctcactcacagttct
ggaggcagaaagtcccaatcaggctgcagcctattcaggtgtttctaggg
gtttgtttgttttgttttgttttgttttgttttgttttgttttgttttgt
ttttcaagacagggtttctctatgtagccctggctgtcctgaaactttct
cagtagaccaggctggccttgaactcagagatccacctgcctctgcctcc
taaatgctaggacgaaaggagtgcgccaccatcgcctggcacaggtcagt
tcttgttgagaaacggctttctggattacgtcaagtgacctctctgtgtc
cttgtacagagtctagagaggaagagaaagagaacacatgagcttgaggg
agaatgtgagcataagtttgctgcagtatctggttctaagttctgagtcc
accatcctcccttaattacctgctaaaggccctctctgcacatgccgtca
gtcacagaggtagtcatgcttccacatactaatgggatgggagg
caggacaggcagggctacaaatagaaaccctttgtttgaaaaaaaaaaac
aaaaacaaaaacaaataagaacaacaagaaagaaagaaagaaagagagag
agagagagagagagagagagagagagagagagagaaagaaagaggagggg
aggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25167157_25167676
seq2: B6Ng01-331F14.b_49_568

seq1  GAATTCTACGAGTTGCATGGGCCTGAGCCAGCTTGAGCCAACTTGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGAGTTGCATGGGCCTGAGCCAGCTTGAGCCAACTTGACAAA  50

seq1  TAGCCACTTACTATATAGTTTAAAAACAGATAGGTCTCACTCACAGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTTACTATATAGTTTAAAAACAGATAGGTCTCACTCACAGTTCT  100

seq1  GGAGGCAGAAAGTCCCAATCAGGCTGCAGCCTATTCAGGTGTTTCTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGAAAGTCCCAATCAGGCTGCAGCCTATTCAGGTGTTTCTAGGG  150

seq1  GTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGT  200

seq1  TTTTCAAGACAGGGTTTCTCTATGTAGCCCTGGCTGTCCTGAAACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGACAGGGTTTCTCTATGTAGCCCTGGCTGTCCTGAAACTTTCT  250

seq1  CAGTAGACCAGGCTGGCCTTGAACTCAGAGATCCACCTGCCTCTGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGACCAGGCTGGCCTTGAACTCAGAGATCCACCTGCCTCTGCCTCC  300

seq1  TAAATGCTAGGACGAAAGGAGTGCGCCACCATCGCCTGGCACAGGTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTAGGACGAAAGGAGTGCGCCACCATCGCCTGGCACAGGTCAGT  350

seq1  TCTTGTTGAGAAACGGCTTTCTGGATTACGTCAAGTGACCTCTCTGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGAGAAACGGCTTTCTGGATTACGTCAAGTGACCTCTCTGTGTC  400

seq1  CTTGTACAGAGTCTAGAGAGGAAGAGAAAGAGAACACATGAGCTTGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACAGAGTCTAGAGAGGAAGAGAAAGAGAACACATGAGCTTGAGGG  450

seq1  AGAATGTGAGCATAAGTTTGCTGCAGTATCTGGTTCTAAGTTCTGAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGAGCATAAGTTTGCTGCAGTATCTGGTTCTAAGTTCTGAGTCC  500

seq1  ACCATCCTCCCTTAATTACC  520
      ||||||||||||||||||||
seq2  ACCATCCTCCCTTAATTACC  520

seq1: chr16_5177721_5177794
seq2: B6Ng01-331F14.g_148_226 (reverse)

seq1  CCCTCCC--CCTC---CCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  45
      |||||||  ||||   | ||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTCCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  50

seq1  CTCTCTCTCTCTTTCTTTCTTTCTTTCTT  74
      |||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTTTCTTTCTTTCTTTCTT  79