BAC Information

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BAC

Clone NameB6Ng01-331N19
Chromosome16 (Build37)
Map Location 89,356,874 - 89,468,983
singlet/doubletdoublet
Overlap geneLOC100040456, Krtap21-1, Krtap6-2
Upstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
Downstream gene5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331N19.bB6Ng01-331N19.g
ACCGA118122GA118123
length1,017456
definitionB6Ng01-331N19.b B6Ng01-331N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,467,924 - 89,468,983)(89,356,874 - 89,357,335)
sequence
gaattctccaatgactagacaaagcattatgtacgagcagatgtactcgt
ttgtcttttgctttctgtattatgaccggttgactcttagattttttttg
accttggatgcaatgctcctccatgtttatgactgttttaatcaaaatgg
cccccaaaggctcatacattttcatttgtaattcccagttgatacattgt
ttggaaagcattaggagatctgactttgttggaggtagtaggtaggtctt
tatcgaaggagatgtgttgctggaaatgcgtttgagattttgaaagccac
tattctctcagtcttctccacttgactctttcctgcctgctgcctgtgga
tcaggaggtgatgctctcagctccttgtctagtgccatgcctttctgcct
tcctctctgttttgtgccatgataataatggactaattctctgaaactgc
aagctagtctccaattaaatgctttcttccaatagttgccttggtcatgg
tgtcttatcacaacagtaattaagacttagagttagaaattatttctata
gtttacagtgaatataaatattatagtatagtgtatacagtagtcactca
ttagtctaaagaccataaccctagatactttccttttagactttcacatt
ctttcctactatatacttgttcaaatagttccatgaccagataccagtcc
tgtgctgcagaagtcaggaaaattgttcaaagtagctgaagaaagatacc
ttgaccagattaactaaccccatcttgcctttctctgactctgtgtttgt
cagcttaatctttactttcatgaacaatggactgatagatgaacatcttt
gtgacatggaaccaaaactaccaaaaatatctggaagcccaaatgggaga
gattatctatcttgataaggctgggctctgaagcataaatacatcatagg
aggaccatttttccccacatcactgatagtgatagtgatagtgatagtga
tagtgatagtgaatagt
cgggaacgaatcgggaatgggagtttctcattcattctcctggccatctg
gccatctcttctgctgctctccacacctgatcccgaatcccccaatttcc
ctccctatccccttttccccactgttctctccctccattggcatcttatg
agtgttttattcccccttctaagtgagattcaagaatcctcgcttgtgcc
ttccttcttgtttagcttctttgggtctgtagagtgtagcatcatcttca
tatgggtcctgaaccactggagcaggggccatcccaaaagctgttacctg
catgtggaatataatcttctatctgggctgccttgtctgtcctcagtggg
agagggggtgcctagccccggagagacttgatgtgccaggatgaggggat
atctagggggccccacccagtcaaaggaaaagggaagggggagggtgaag
ggattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89467924_89468983
seq2: B6Ng01-331N19.b_48_1064 (reverse)

seq1  ACTATCACAATCACAATCACAATCACAATCACTATCACTATCACTATCAC  50
                                          |||||     ||||
seq2  ------------------------------------ACTAT-----TCAC  9

seq1  TATCACTATCACTATCACTATCACTATCACTATCAGTGATTGTGGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCACTATCACTATCACTATCACTATCACTATCAGTGA-TGTGGGGAAA  58

seq1  AATTGGTCCTCCTATGATGTATTTATGCTTCAGAGCCCAGCCTTATCAAG  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TGGTCCTCCTATGATGTATTTATGCTTCAGAGCCCAGCCTTATCAAG  107

seq1  ATAGATAATCTCTCCCATTTGGGCTTCCAGATATTTTTGGTAGTTTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAATCTCTCCCATTTGGGCTTCCAGATATTTTTGGTAGTTTTGGT  157

seq1  TCCATGTCACAAAGATGTTCATCTATCAGTCCATTGTTCATGAAAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTCACAAAGATGTTCATCTATCAGTCCATTGTTCATGAAAGTAAA  207

seq1  GATTAAGCTGACAAACACAGAGTCAGAGAAAGGCAAGATGGGGTTAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGCTGACAAACACAGAGTCAGAGAAAGGCAAGATGGGGTTAGTTA  257

seq1  ATCTGGTCAAGGTATCTTTCTTCAGCTACTTTGAACAATTTTCCTGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTCAAGGTATCTTTCTTCAGCTACTTTGAACAATTTTCCTGACTT  307

seq1  CTGCAGCACAGGACTGGTATCTGGTCATGGAACTATTTGAACAAGTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCACAGGACTGGTATCTGGTCATGGAACTATTTGAACAAGTATAT  357

seq1  AGTAGGAAAGAATGTGAAAGTCTAAAAGGAAAGTATCTAGGGTTATGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAAAGAATGTGAAAGTCTAAAAGGAAAGTATCTAGGGTTATGGTC  407

seq1  TTTAGACTAATGAGTGACTACTGTATACACTATACTATAATATTTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACTAATGAGTGACTACTGTATACACTATACTATAATATTTATATT  457

seq1  CACTGTAAACTATAGAAATAATTTCTAACTCTAAGTCTTAATTACTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAACTATAGAAATAATTTCTAACTCTAAGTCTTAATTACTGTTG  507

seq1  TGATAAGACACCATGACCAAGGCAACTATTGGAAGAAAGCATTTAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGACACCATGACCAAGGCAACTATTGGAAGAAAGCATTTAATTGG  557

seq1  AGACTAGCTTGCAGTTTCAGAGAATTAGTCCATTATTATCATGGCACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCTTGCAGTTTCAGAGAATTAGTCCATTATTATCATGGCACAAA  607

seq1  ACAGAGAGGAAGGCAGAAAGGCATGGCACTAGACAAGGAGCTGAGAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGAAGGCAGAAAGGCATGGCACTAGACAAGGAGCTGAGAGCAT  657

seq1  CACCTCCTGATCCACAGGCAGCAGGCAGGAAAGAGTCAAGTGGAGAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTGATCCACAGGCAGCAGGCAGGAAAGAGTCAAGTGGAGAAGAC  707

seq1  TGAGAGAATAGTGGCTTTCAAAATCTCAAACGCATTTCCAGCAACACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAATAGTGGCTTTCAAAATCTCAAACGCATTTCCAGCAACACATC  757

seq1  TCCTTCGATAAAGACCTACCTACTACCTCCAACAAAGTCAGATCTCCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCGATAAAGACCTACCTACTACCTCCAACAAAGTCAGATCTCCTAA  807

seq1  TGCTTTCCAAACAATGTATCAACTGGGAATTACAAATGAAAATGTATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCAAACAATGTATCAACTGGGAATTACAAATGAAAATGTATGAG  857

seq1  CCTTTGGGGGCCATTTTGATTAAAACAGTCATAAACATGGAGGAGCATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGGGCCATTTTGATTAAAACAGTCATAAACATGGAGGAGCATTG  907

seq1  CATCCAAGGTCAAAAAAAATCTAAGAGTCAACCGGTCATAATACAGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAGGTCAAAAAAAATCTAAGAGTCAACCGGTCATAATACAGAAAG  957

seq1  CAAAAGACAAACGAGTACATCTGCTCGTACATAATGCTTTGTCTAGTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACAAACGAGTACATCTGCTCGTACATAATGCTTTGTCTAGTCAT  1007

seq1  TGGAGAATTC  1060
      ||||||||||
seq2  TGGAGAATTC  1017

seq1: chr16_89356874_89357335
seq2: B6Ng01-331N19.g_68_529

seq1  GAATTCCGGGAACGAATCGGGAATGGGAGTTTCTCATTCATTCTCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGGAACGAATCGGGAATGGGAGTTTCTCATTCATTCTCCTGGC  50

seq1  CATCTGGCCATCTCTTCTGCTGCTCTCCACACCTGATCCCGAATCCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCCATCTCTTCTGCTGCTCTCCACACCTGATCCCGAATCCCCCA  100

seq1  ATTTCCCTCCCTATCCCCTTTTCCCCACTGTTCTCTCCCTCCATTGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTCCCTATCCCCTTTTCCCCACTGTTCTCTCCCTCCATTGGCAT  150

seq1  CTTATGAGTGTTTTATTCCCCCTTCTAAGTGAGATTCAAGAATCCTCGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAGTGTTTTATTCCCCCTTCTAAGTGAGATTCAAGAATCCTCGCT  200

seq1  TGTGCCTTCCTTCTTGTTTAGCTTCTTTGGGTCTGTAGAGTGTAGCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTCCTTCTTGTTTAGCTTCTTTGGGTCTGTAGAGTGTAGCATCA  250

seq1  TCTTCATATGGGTCCTGAACCACTGGAGCAGGGGCCATCCCAAAAGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATATGGGTCCTGAACCACTGGAGCAGGGGCCATCCCAAAAGCTGT  300

seq1  TACCTGCATGTGGAATATAATCTTCTATCTGGGCTGCCTTGTCTGTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCATGTGGAATATAATCTTCTATCTGGGCTGCCTTGTCTGTCCTC  350

seq1  AGTGGGAGAGGGGGTGCCTAGCCCCGGAGAGACTTGATGTGCCAGGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGAGGGGGTGCCTAGCCCCGGAGAGACTTGATGTGCCAGGATGA  400

seq1  GGGGATATCTAGGGGGCCCCACCCAGTCAAAGGAAAAGGGAAGGGGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATATCTAGGGGGCCCCACCCAGTCAAAGGAAAAGGGAAGGGGGAGG  450

seq1  GTGAAGGGATTT  462
      ||||||||||||
seq2  GTGAAGGGATTT  462