BAC Information

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BAC

Clone NameB6Ng01-332J24
Chromosome16 (Build37)
Map Location 43,252,667 - 43,378,934
singlet/doubletdoublet
Overlap geneLOC667484
Upstream geneGap43, BC002163
Downstream geneZbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1, Ccdc52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332J24.bB6Ng01-332J24.g
ACCGA118673GA118674
length1,1311,105
definitionB6Ng01-332J24.b B6Ng01-332J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,377,823 - 43,378,934)(43,252,667 - 43,253,781)
sequence
gaattctatggtgctataaaacagcggagccattctatgtcctaaggaat
tatcagtcagatgctaaggtgacagtaacatgctcagcctgagagctggg
tgagccctcctgagcggcctaggctgatttctcacggtctgttctgggtg
ttgaatgaaaaacaagggatgtccacttgttgctatgtaaaaagaaaacc
acactttttgaggagtttaagtatatgagattattaaaagttagtatttc
ttactaattaggtaatatttatcaagcttctaaggcacttgtgtgatggt
tttagtatgtgagaaaggttaataatgtgggcagattgtgacatccagct
gatgatgtgtatcaagtacttgaggggaccctaaaagagaaattgccttc
actagcaggttgtaattaatagtcatttaccagcaacccatatttggtaa
taagccacatcctcactttctggtagaaatgagagcatcactactttaat
cagtttcccacaggtttcctcatgttgtagtcagagtactgcctgtaaca
atgtagacatcaggaaaaggaggaggcataaaagcacctgtttgatttcc
cagtttctctgttcctttacaattctagtaaaaagaaaaccagtatgcta
tccatattgtcaaagatttccatcctgagttctgtttctaccttaggaga
tgatttcaaaaggaaaaattagggatgaagggaatattggattttttcca
ttcattcattcattcattcattcattcattcattcattctaaccaaatgc
ctaatatgtcctaaaatattttgctagcatttgtaataacaagatgaaag
acacagtctctgttttaaaatatttctgtgttgtaagaaaaaggaaaaat
aaatatccaactaattagaacatagagtgataagcacttgtaattaagtt
gagcatcaatctccaagggagagcaagaaggtggtggggactgtgccttt
ttaatgtaagaagcttgaataaatggagaagttttgagggagatgtggcc
tttcaatgggaaacggtgaagtgatggaaagtaactgtgataaatcacgt
ctgatggggagggaacacctaggttaaatgc
gaattctcactcactgtccatattcagaagtgctgtatcatgaaaattaa
agtgcttatcaagcacagtgatgttcttccctgcaaatggaaacacacat
tttcttgactgtttaaagtacgcatgcattcatttgtttgtgtcctacct
atagggagcatgttgtgaataccctgaccaggtaaagctctattaaaagt
cttatcatctcaagaccattgtgctcattactgtagtttctattttcttt
catatgctgaacatgttataaaagctatactaaagatatgacttcctatt
cttgttttatttaattggtgaaatacagataccaagtagtagtcatggcg
ttgtctacacgtggatacacagctcttcttttcttctatctagagtagca
tgttgctttgaaaggatttgtacaatcccacaataataaattaaaaacaa
acaagcaacctctaaccagatcataaagactgcttctgatgactggccaa
tagcatcgctcttcccattcttagctgaaccacaccagttgtttaatctt
agatttttcacattgcacagttagcttttttcacagtacagttttgaaag
atgagcactgtatacataaccatgataaaatgcctcctggatacagagcc
tttaaagtgagtgtgtgcccagaggcagggagggggaggtctgctcgagg
ttgaaaagcacagtgatgtgtcagaatgcttgtgttctgactcatactga
caccgagtgacttgtcactcagggatttcaccagttcccacatctgactc
agtgacagtttacaacagtctgaatttcaataattatccaagtaattaaa
gtcagaaacattttggaaatgttcatattgtattacaattttaaactgta
aatataggtttctcatgagatagagggccatttttgttatgttaagttct
cttcttccaagtgctggcatctaaattaccagagtctggtctaggcccag
taatagttcatgatagttaaactataaaagaaatgggagaatactagaga
gtatgtaattggatgaaatttgtattctggattccctaagtttgacacag
gatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43377823_43378934
seq2: B6Ng01-332J24.b_44_1174 (reverse)

seq1  GCATTT-ACCT-GGTG-TCCCTCCCCATC-GACTGTGATTTATC-CAGTT  45
      |||||| |||| |||| |||||||||||| ||| |||||||||| |||||
seq2  GCATTTAACCTAGGTGTTCCCTCCCCATCAGAC-GTGATTTATCACAGTT  49

seq1  -CCTTCCATC-CTTCA-CGTT--CCATTG-AAGGCACCATCT-CCTCAAA  88
       | ||||||| ||||| ||||  |||||| |||||  ||||| |||||||
seq2  ACTTTCCATCACTTCACCGTTTCCCATTGAAAGGCCACATCTCCCTCAAA  99

seq1  ACTTCCTCATTTATTC-AGCTTCTT-CATT-AAAAGGCACAGTCCC--AC  133
      |||||  ||||||||| |||||||| |||| |||||||||||||||   |
seq2  ACTTCTCCATTTATTCAAGCTTCTTACATTAAAAAGGCACAGTCCCCACC  149

seq1  ACCT--CTGCTCTCCCTTGGAGATTGATGCTCAACTTAATTACAAGTGCT  181
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTGCTCTCCCTTGGAGATTGATGCTCAACTTAATTACAAGTGCT  199

seq1  TATCACTCTATGTTCTAATTAGTTGGATATTTATTTTTCCTTTTTCTTAC  231
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCTATGTTCTAATTAGTTGGATATTTATTTTTCCTTTTTCTTAC  249

seq1  AACACAGAAATATTTTAAAACAGAGACTGTGTCTTTCATCTTGTTATTAC  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAATATTTTAAAACAGAGACTGTGTCTTTCATCTTGTTATTAC  299

seq1  AAATGCTAGCAAAATA-TTTAGGACATATTAGGCATTTGGTTAGAATGAA  330
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATGCTAGCAAAATATTTTAGGACATATTAGGCATTTGGTTAGAATGAA  349

seq1  TGAATGAATGAATGAATGAATGAATGAATGAATGGAAAAAATCCAATATT  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAATGAATGAATGAATGAATGAATGGAAAAAATCCAATATT  399

seq1  CCCTTCATCCCTAATTTTTCCTTTTGAAATCATCTCCTAAGGTAGAAACA  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCATCCCTAATTTTTCCTTTTGAAATCATCTCCTAAGGTAGAAACA  449

seq1  GAACTCAGGATGGAAATCTTTGACAATATGGATAGCATACTGGTTTTCTT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGATGGAAATCTTTGACAATATGGATAGCATACTGGTTTTCTT  499

seq1  TTTACTAGAATTGTAAAGGAACAGAGAAACTGGGAAATCAAACAGGTGCT  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGAATTGTAAAGGAACAGAGAAACTGGGAAATCAAACAGGTGCT  549

seq1  TTTATGCCTCCTCCTTTTCCTGATGTCTACATTGTTACAGGCAGTACTCT  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCTCCTCCTTTTCCTGATGTCTACATTGTTACAGGCAGTACTCT  599

seq1  GACTACAACATGAGGAAACCTGTGGGAAACTGATTAAAGTAGTGATGCTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAACATGAGGAAACCTGTGGGAAACTGATTAAAGTAGTGATGCTC  649

seq1  TCATTTCTACCAGAAAGTGAGGATGTGGCTTATTACCAAATATGGGTTGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTACCAGAAAGTGAGGATGTGGCTTATTACCAAATATGGGTTGC  699

seq1  TGGTAAATGACTATTAATTACAACCTGCTAGTGAAGGCAATTTCTCTTTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATGACTATTAATTACAACCTGCTAGTGAAGGCAATTTCTCTTTT  749

seq1  AGGGTCCCCTCAAGTACTTGATACACATCATCAGCTGGATGTCACAATCT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCCCTCAAGTACTTGATACACATCATCAGCTGGATGTCACAATCT  799

seq1  GCCCACATTATTAACCTTTCTCACATACTAAAACCATCACACAAGTGCCT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACATTATTAACCTTTCTCACATACTAAAACCATCACACAAGTGCCT  849

seq1  TAGAAGCTTGATAAATATTACCTAATTAGTAAGAAATACTAACTTTTAAT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTTGATAAATATTACCTAATTAGTAAGAAATACTAACTTTTAAT  899

seq1  AATCTCATATACTTAAACTCCTCAAAAAGTGTGGTTTTCTTTTTACATAG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATATACTTAAACTCCTCAAAAAGTGTGGTTTTCTTTTTACATAG  949

seq1  CAACAAGTGGACATCCCTTGTTTTTCATTCAACACCCAGAACAGACCGTG  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTGGACATCCCTTGTTTTTCATTCAACACCCAGAACAGACCGTG  999

seq1  AGAAATCAGCCTAGGCCGCTCAGGAGGGCTCACCCAGCTCTCAGGCTGAG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAGCCTAGGCCGCTCAGGAGGGCTCACCCAGCTCTCAGGCTGAG  1049

seq1  CATGTTACTGTCACCTTAGCATCTGACTGATAATTCCTTAGGACATAGAA  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACTGTCACCTTAGCATCTGACTGATAATTCCTTAGGACATAGAA  1099

seq1  TGGCTCCGCTGTTTTATAGCACCATAGAATTC  1112
      ||||||||||||||||||||||||||||||||
seq2  TGGCTCCGCTGTTTTATAGCACCATAGAATTC  1131

seq1: chr16_43252667_43253781
seq2: B6Ng01-332J24.g_67_1171

seq1  GAATTCTCACTCACTGTCCATATTCAGAAGTGCTGTATCATGAAAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTCACTGTCCATATTCAGAAGTGCTGTATCATGAAAATTAA  50

seq1  AGTGCTTATCAAGCACAGTGATGTTCTTCCCTGCAAATGGAAACACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTATCAAGCACAGTGATGTTCTTCCCTGCAAATGGAAACACACAT  100

seq1  TTTCTTGACTGTTTAAAGTACGCATGCATTCATTTGTTTGTGTCCTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGACTGTTTAAAGTACGCATGCATTCATTTGTTTGTGTCCTACCT  150

seq1  ATAGGGAGCATGTTGTGAATACCCTGACCAGGTAAAGCTCTATTAAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAGCATGTTGTGAATACCCTGACCAGGTAAAGCTCTATTAAAAGT  200

seq1  CTTATCATCTCAAGACCATTGTGCTCATTACTGTAGTTTCTATTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATCTCAAGACCATTGTGCTCATTACTGTAGTTTCTATTTTCTTT  250

seq1  CATATGCTGAACATGTTATAAAAGCTATACTAAAGATATGACTTCCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTGAACATGTTATAAAAGCTATACTAAAGATATGACTTCCTATT  300

seq1  CTTGTTTTATTTAATTGGTGAAATACAGATACCAAGTAGTAGTCATGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTATTTAATTGGTGAAATACAGATACCAAGTAGTAGTCATGGCG  350

seq1  TTGTCTACACGTGGATACACAGCTCTTCTTTTCTTCTATCTAGAGTAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACACGTGGATACACAGCTCTTCTTTTCTTCTATCTAGAGTAGCA  400

seq1  TGTTGCTTTGAAAGGATTTGTACAATCCCACAATAATAAATTAAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTGAAAGGATTTGTACAATCCCACAATAATAAATTAAAAACAA  450

seq1  ACAAGCAACCTCTAACCAGATCATAAAGACTGCTTCTGATGACTGGCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAACCTCTAACCAGATCATAAAGACTGCTTCTGATGACTGGCCAA  500

seq1  TAGCATCGCTCTTCCCATTCTTAGCTGAACCACACCAGTTGTTTAATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCGCTCTTCCCATTCTTAGCTGAACCACACCAGTTGTTTAATCTT  550

seq1  AGATTTTTCACATTGCACAGTTAGCTTTTTTCACAGTACAGTTTTGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTCACATTGCACAGTTAGCTTTTTTCACAGTACAGTTTTGAAAG  600

seq1  ATGAGCACTGTATACATAACCATGATAAAATGCCTCCTGGATACAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACTGTATACATAACCATGATAAAATGCCTCCTGGATACAGAGCC  650

seq1  TTTAAAGTGAGTGTGTGCCCAGAGGCAGGGAGGGGGAGGTCTGCTCGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTGAGTGTGTGCCCAGAGGCAGGGAGGGGGAGGTCTGCTCGAGG  700

seq1  TTGAAAAGCACAGTGATGTGTCAGAATGCTTGTGTTCTGACTCATACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGCACAGTGATGTGTCAGAATGCTTGTGTTCTGACTCATACTGA  750

seq1  CACCGAGTGACTTGTCACTCAGGGATTTCACCAGTTCCCACATCTGACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGTGACTTGTCACTCAGGGATTTCACCAGTTCCCACATCTGACTC  800

seq1  AGTGACAGTTTACAACAGTCTGAATTTCAATAATTATCCAAGTAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGTTTACAACAGTCTGAATTTCAATAATTATCCAAGTAATTAAA  850

seq1  GTCAGAAACATTTTGGAAATGTTCAATATTGTATTACAATTTTAAACTGT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCAGAAACATTTTGGAAATGTTC-ATATTGTATTACAATTTTAAACTGT  899

seq1  AAATAATAGGTTTCTCATGAGATAGAGGGCCATTTTTGTTATGTTAAGTT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAT-ATAGGTTTCTCATGAGATAGAGGGCCATTTTTGTTATGTTAAGTT  948

seq1  CTCTTCTTCCAAGTGCTGGCATCTAAATTAACCAGAGTCTGGTCTAAGGG  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||  ||
seq2  CTCTTCTTCCAAGTGCTGGCATCTAAATT-ACCAGAGTCTGGTCTA--GG  995

seq1  CCCAGTAATAGTTCATGATAGTTAAACTAATAAAAGAAATGGGAG-ATAC  1049
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CCCAGTAATAGTTCATGATAGTTAAACT-ATAAAAGAAATGGGAGAATAC  1044

seq1  TTAGAGAAGTATGTAATTTGATGAAATTTGTATTCCTTGGATTCTCTAAT  1099
       ||||| ||||||||||| ||||||||||||||||  ||||||| |||| 
seq2  -TAGAG-AGTATGTAATTGGATGAAATTTGTATTC--TGGATTCCCTAA-  1089

seq1  GTTTGACACAGGATGA  1115
      ||||||||||||||||
seq2  GTTTGACACAGGATGA  1105