BAC Information

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BAC

Clone NameB6Ng01-333D12
Chromosome16 (Build37)
Map Location 40,313,436 - 40,420,189
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333D12.bB6Ng01-333D12.g
ACCGA119094GA119095
length1,1931,232
definitionB6Ng01-333D12.b B6Ng01-333D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,313,436 - 40,314,652)(40,418,954 - 40,420,189)
sequence
gaattctacctatttccttttccatctttagttgtctgattaaatgctta
ttgtattacagatcctccctcaatatttgttgacttaagtatgtgttata
taataaagatagtgagcctgggagtaaagtaaggtttttatctgactttt
cttatttaaagacctttccaaagccctggctacttgctgataggaaacaa
catcactctaagttttaaaagttgaagattcattgggaattcttttatct
acttagcaattaatttacatctactgtaattaatttttgagaaacctgca
aaagcctattagctgatgttcataagcagtggatcctaacttgggaagct
gggaggaataaatcagcctgtatcagccagatatgttgccctggcagata
gccttggcaagcacccaaacataaataaactattttccaagttttggtaa
aaataattaagttcagcttaaaatgcatccaaactccattgtctgatggc
ccatagaaatgaataattccattttatactgatagagggtaggttcagga
ggagttcagagcagtattgtaataagcaggcattcacaatgattttgtaa
acgaggagatgcattctcttatgagtagaatttattgaaaaatagtaata
gaaagccattctccagaccttcctggagcggtgctgtcttcgaaggtttg
gcttctgacacagctaaagcccagcatctctgtcctgttgcaaacgtgca
gctgtcatttcccttcctaaacaccatgtcacctcatgctctgccttcgc
tctcatcgtgtgctcgtaacagacaagttttaaacactgcctagaacagg
tggtccattacttagagcgggagagttagatatggtctcctcctttcatt
ttcaattattattacccattcagaagcatcttcagactttcctcgatatg
aaatctataggattatctggattaaaaataagtgctgacatctcatgaca
tcaggaggtttagtttcgggtttatttgctgtgctctccttttctcacag
atgatcgtgagtaaactgcccatgagactcgtcccaagacatgctctgac
gaggcttctggagggtggcatcatagaagtcttcctcacctctttcggac
tggattgaaggttaggatacggagagctctctcttcttaacca

gaattcatgaaagaagacaaaaaaatagattatgataacaatggaagaaa
aaaacagagatagaatttagtgtgctttcttataaatacctgaggctcca
gaacatttcaccaggggtcatttttcccaggtcttacctttcccaattaa
aaaattcaataaaactaactaactaactaactaactaactaactaactaa
ctaactgactgactgactaaccaaaggtgacttctcccattcagaatata
aatttaatccactaggagtaaagtataaattaatccactataattgagtg
aatataactttaatgaaatctaaggcaactttcatgacagacccttataa
accaatgtccagatattaaaaggattggatttattttgagatcttagatt
atcattgtgtaccttcatgcgtagtgtcttatatatgttacttgggatca
aaaaaaggctttggtgcatgttatacaagaagattagcagttgagttaca
ccctaacctataataatttttcattaggcatatatttgagcaaggctttg
tgttagattccagaaatatatatctggtttttaacttcatagacatacag
gtagatgactaaattattaagaataaaatattaaatcaatgataatagct
gaagaattgcagtgtactgctgtagataacaatataatctgtccagaagc
tatctagagacttccagaagaaagttcagtgggagacttaagaagggaac
acttaaattatctcaggctaaatagtgacattaattaagcatagtgataa
tgattaaaatagcttaccaaaaaagttctgaagagaaagctttctctgac
agtgttgatttaggattcactttttctcatctatgctcaacaataaaatg
ggattcgtagttcttgccgcagaaggggagaactgagttctcatcatagg
aaaattctgcttccgagctttgctaatataggagaatttgtgaggggtaa
tttttttattcccacccaacataaataatcaagaaatatggtggtgaaga
atactaattatcctaattatcaagaagtgtttgttgtttgaaagttcaaa
gaagagtaaagggatggggttgggggtgcttgcctgtcatgatgtcactg
cattatggatgaaataacagcttatgaagaataactgaactgttttactg
gccaactccgttctctcaatgaaaccgttagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40313436_40314652
seq2: B6Ng01-333D12.b_47_1239

seq1  GAATTCTACCTATTTCCTTTTCCATCTTTAGTTGTCTGATTAAATGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTATTTCCTTTTCCATCTTTAGTTGTCTGATTAAATGCTTA  50

seq1  TTGTATTACAGATCCTCCCTCAATATTTGTTGACTTAAGTATGTGTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTACAGATCCTCCCTCAATATTTGTTGACTTAAGTATGTGTTATA  100

seq1  TAATAAAGATAGTGAGCCTGGGAGTAAAGTAAGGTTTTTATCTGACTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGATAGTGAGCCTGGGAGTAAAGTAAGGTTTTTATCTGACTTTT  150

seq1  CTTATTTAAAGACCTTTCCAAAGCCCTGGCTACTTGCTGATAGGAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAAAGACCTTTCCAAAGCCCTGGCTACTTGCTGATAGGAAACAA  200

seq1  CATCACTCTAAGTTTTAAAAGTTGAAGATTCATTGGGAATTCTTTTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTCTAAGTTTTAAAAGTTGAAGATTCATTGGGAATTCTTTTATCT  250

seq1  ACTTAGCAATTAATTTACATCTACTGTAATTAATTTTTGAGAAACCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAATTAATTTACATCTACTGTAATTAATTTTTGAGAAACCTGCA  300

seq1  AAAGCCTATTAGCTGATGTTCATAAGCAGTGGATCCTAACTTGGGAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTATTAGCTGATGTTCATAAGCAGTGGATCCTAACTTGGGAAGCT  350

seq1  GGGAGGAATAAATCAGCCTGTATCAGCCAGATATGTTGCCCTGGCAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAATAAATCAGCCTGTATCAGCCAGATATGTTGCCCTGGCAGATA  400

seq1  GCCTTGGCAAGCACCCAAACATAAATAAACTATTTTCCAAGTTTTGGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCAAGCACCCAAACATAAATAAACTATTTTCCAAGTTTTGGTAA  450

seq1  AAATAATTAAGTTCAGCTTAAAATGCATCCAAACTCCATTGTCTGATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTAAGTTCAGCTTAAAATGCATCCAAACTCCATTGTCTGATGGC  500

seq1  CCATAGAAATGAATAATTCCATTTTATACTGATAGAGGGTAGGTTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAATGAATAATTCCATTTTATACTGATAGAGGGTAGGTTCAGGA  550

seq1  GGAGTTCAGAGCAGTATTGTAATAAGCAGGCATTCACAATGATTTTGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCAGAGCAGTATTGTAATAAGCAGGCATTCACAATGATTTTGTAA  600

seq1  ACGAGGAGATGCATTCTCTTATGAGTAGAATTTATTGAAAAATAGTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGAGATGCATTCTCTTATGAGTAGAATTTATTGAAAAATAGTAATA  650

seq1  GAAAGCCATTCTCCAGACCTTCCTGGAGCGGTGCTGTCTTCGAAGGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCATTCTCCAGACCTTCCTGGAGCGGTGCTGTCTTCGAAGGTTTG  700

seq1  GCTTCTGACACAGCTAAAGCCCAGCATCTCTGTCCTGTTGCAAACGTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGACACAGCTAAAGCCCAGCATCTCTGTCCTGTTGCAAACGTGCA  750

seq1  GCTGTCATTTCCCTTCCTAAACACCATGTCACCTCATGCTCTGCCTTCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATTTCCCTTCCTAAACACCATGTCACCTCATGCTCTGCCTTCGC  800

seq1  TCTCATCGTGTGCTCGTAACAGACAAGTTTTAAACACTGCCTAGAACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCGTGTGCTCGTAACAGACAAGTTTTAAACACTGCCTAGAACAGG  850

seq1  TGGTCCATTACTTAGAGCGGGAGAGTTAGATATGGTCTCCTCCTTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATTACTTAGAGCGGGAGAGTTAGATATGGTCTCCTCCTTTCATT  900

seq1  TTCAATTATTATTACCCATTCAGAAGCATCTTCAGACTTTCCTCGATATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTATTATTACCCATTCAGAAGCATCTTCAGACTTTCCTCGATATG  950

seq1  AAATCTATAGGATTATCTGGATTAAAAAATAAGTGCTGACATCTCATGAC  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATCTATAGGATTATCTGGATT-AAAAATAAGTGCTGACATCTCATGAC  999

seq1  ATCAAGGAAGGTTTAGTTTCGGGTTTTATTTGCTTGTTGCTTCTCCCTTT  1050
      ||||  | ||||||||||||||| ||||||||||   ||| |||||  ||
seq2  ATCA--GGAGGTTTAGTTTCGGG-TTTATTTGCT--GTGC-TCTCC--TT  1041

seq1  TTCTCACAGATGATTCGTGAGGTAAACTGCCCATGAGACCTCCGTCCCAA  1100
      ||||||||||||| |||||| ||||||||||||||||||   ||||||||
seq2  TTCTCACAGATGA-TCGTGA-GTAAACTGCCCATGAGAC--TCGTCCCAA  1087

seq1  GACATGGCTTCCTGGACAGAGGCTTCCTGGAGGGTTGGGCATCATTAGAA  1150
      ||||| |||  || ||| ||||||| |||||||||  ||||||| ||| |
seq2  GACAT-GCT--CT-GAC-GAGGCTT-CTGGAGGGT--GGCATCA-TAG-A  1127

seq1  AGTCTTCCTCA-CTCTTTCTGACTGGAGTTGAATGTTAAGATACAGGAAG  1199
      ||||||||||| ||||||| ||||||| ||||| |||| |||||  | ||
seq2  AGTCTTCCTCACCTCTTTCGGACTGGA-TTGAAGGTTAGGATAC--GGAG  1174

seq1  AGCTCTC-CTTCTTAACCA  1217
      ||||||| |||||||||||
seq2  AGCTCTCTCTTCTTAACCA  1193


seq1: chr16_40418954_40420189
seq2: B6Ng01-333D12.g_66_1297 (reverse)

seq1  GCTAAC-GTTTCATTGAAGAG-ACGGAGTTTGCCCAGTAAAACAGGTCAT  48
      |||||| ||||||||| |||| |||||| ||| |||||||||||| ||| 
seq2  GCTAACGGTTTCATTG-AGAGAACGGAG-TTGGCCAGTAAAACAGTTCA-  47

seq1  GTTATTCTTTCATAGACTGGTTATTTTCCATCATATATGGCAGTGACATC  98
      ||||||| ||||||  || |||||||  ||||  |||  |||||||||||
seq2  GTTATTC-TTCATAAGCT-GTTATTT--CATC-CATAATGCAGTGACATC  92

seq1  ATGACAGGC-AGCACCCCCAACCCCAACTCCTTTTACTTCTTCTTTG-AC  146
      ||||||||| ||||||||||||||||  ||| ||||| ||||||||| ||
seq2  ATGACAGGCAAGCACCCCCAACCCCA--TCCCTTTAC-TCTTCTTTGAAC  139

seq1  TTTCAAATCCATCATAACAACATCTTGATAATTAGAATTATTAGTATTCC  196
      |||||||  || || ||| || ||||||||||||| || |||||||||| 
seq2  TTTCAAA--CAACA-AAC-ACTTCTTGATAATTAGGATAATTAGTATTCT  185

seq1  TCACAACCATATTTCTTGATTATTTATGTTGGTTGGG-ATAATAGAATTT  245
      |||| ||||||||||||||||||||||||||| |||| |||| | |||| 
seq2  TCACCACCATATTTCTTGATTATTTATGTTGGGTGGGAATAAAAAAATTA  235

seq1  CCCCTCACAAATTCTCCTATATTTAGCAAAGCTCGGAAGCAGAATTTTCC  295
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCCTCACAAATTCTCCTATA-TTAGCAAAGCTCGGAAGCAGAATTTTCC  284

seq1  TATGATGAGAACTCAGTTCT-CCCTTTTGGGGCAA-------GAATTCCA  337
      |||||||||||||||||||| ||||| || |||||       |||| |||
seq2  TATGATGAGAACTCAGTTCTCCCCTTCTGCGGCAAGAACTACGAATCCCA  334

seq1  AGCTATTTTTGAGCATAGATGAGAAAAAGTGAATTCCTAAATCAACACCT  387
         |||| ||||||||||||||||||||||||| ||||||||||||| ||
seq2  TTTTATTGTTGAGCATAGATGAGAAAAAGTGAA-TCCTAAATCAACA-CT  382

seq1  GTCAGAG-AAGC-TTCTCTTCCAGAACTTTTTTGGTAAGCTATTTTAATC  435
      ||||||| |||| ||||||| |||||||||||||||||||||||||||||
seq2  GTCAGAGAAAGCTTTCTCTT-CAGAACTTTTTTGGTAAGCTATTTTAATC  431

seq1  ATTATCACTATGCTTAATTAATGTCACTATTTAGCCTGAGATAATTTAAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTATGCTTAATTAATGTCACTATTTAGCCTGAGATAATTTAAG  481

seq1  TGTTCCCTTCTTAAGTCTCCCACTGAACTTTCTTCTGGAAGTCTCTAGAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTTCTTAAGTCTCCCACTGAACTTTCTTCTGGAAGTCTCTAGAT  531

seq1  AGCTTCTGGACAGATTATATTGTTATCTACAGCAGTACACTGCAATTCTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGGACAGATTATATTGTTATCTACAGCAGTACACTGCAATTCTT  581

seq1  CAGCTATTATCATTGATTTAATATTTTATTCTTAATAATTTAGTCATCTA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTATCATTGATTTAATATTTTATTCTTAATAATTTAGTCATCTA  631

seq1  CCTGTATGTCTATGAAGTTAAAAACCAGATATATATTTCTGGAATCTAAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGTCTATGAAGTTAAAAACCAGATATATATTTCTGGAATCTAAC  681

seq1  ACAAAGCCTTGCTCAAATATATGCCTAATGAAAAATTATTATAGGTTAGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCTTGCTCAAATATATGCCTAATGAAAAATTATTATAGGTTAGG  731

seq1  GTGTAACTCAACTGCTAATCTTCTTGTATAACATGCACCAAAGCCTTTTT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAACTCAACTGCTAATCTTCTTGTATAACATGCACCAAAGCCTTTTT  781

seq1  TTGATCCCAAGTAACATATATAAGACACTACGCATGAAGGTACACAATGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCCAAGTAACATATATAAGACACTACGCATGAAGGTACACAATGA  831

seq1  TAATCTAAGATCTCAAAATAAATCCAATCCTTTTAATATCTGGACATTGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAGATCTCAAAATAAATCCAATCCTTTTAATATCTGGACATTGG  881

seq1  TTTATAAGGGTCTGTCATGAAAGTTGCCTTAGATTTCATTAAAGTTATAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGGGTCTGTCATGAAAGTTGCCTTAGATTTCATTAAAGTTATAT  931

seq1  TCACTCAATTATAGTGGATTAATTTATACTTTACTCCTAGTGGATTAAAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAATTATAGTGGATTAATTTATACTTTACTCCTAGTGGATTAAAT  981

seq1  TTATATTCTGAATGGGAGAAGTCACCTTTGGTTAGTCAGTCAGTCAGTTA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTGAATGGGAGAAGTCACCTTTGGTTAGTCAGTCAGTCAGTTA  1031

seq1  GTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTTTATTGAATTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTAGTTTTATTGAATTT  1081

seq1  TTTAATTGGGAAAGGTAAGACCTGGGAAAAATGACCCCTGGTGAAATGTT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGGGAAAGGTAAGACCTGGGAAAAATGACCCCTGGTGAAATGTT  1131

seq1  CTGGAGCCTCAGGTATTTATAAGAAAGCACACTAAATTCTATCTCTGTTT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTCAGGTATTTATAAGAAAGCACACTAAATTCTATCTCTGTTT  1181

seq1  TTTTCTTCCATTGTTATCATAATCTATTTTTTTGTCTTCTTTCATGAATT  1235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCATTGTTATCATAATCTATTTTTTTGTCTTCTTTCATGAATT  1231

seq1  C  1236
      |
seq2  C  1232


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