BAC Information

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BAC

Clone NameB6Ng01-333N12
Chromosome16 (Build37)
Map Location 43,126,734 - 43,272,239
singlet/doubletdoublet
Overlap genenone
Upstream geneLsamp, Gap43, BC002163
Downstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333N12.bB6Ng01-333N12.g
ACCGA119503GA119504
length1,189536
definitionB6Ng01-333N12.b B6Ng01-333N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,126,734 - 43,127,959)(43,271,698 - 43,272,239)
sequence
gaattcagtggttaagagcactgacttatttcagagggcctagggccaac
tcccagcccctacgtggcagctcacaactgtctgtgactccaattttagg
agatttgacagtcttttttggcttctgcaggtatcaggcacacatgtgat
gagcggatatatattcaggcaaaacactcacacacgggctgaagagatgg
ctcagcagttaagagcactgactgctcttccgaaggtcctgagttcaaat
tccagcaaccacatggtgactcacaaccatccataatgagatctgatgcc
ctcttctgaggtgtctgaagacagctacagtgcacttacctataataaat
aaataaatattaaaaaaaaaagttaggacacaacttagccgggccgtggt
ggagcacaactttaatcccagcacttgggaggcagaggcaggcggatttc
tgagttcaagaccagcctggtctacaaagtgagttccagaatagccaggg
ctataaagagaaaccctgtctcgaaaaaacaaacaaaaaaaccactcaca
cacatagaaaagtaaatacatgtttaaacagttaattaggaaggttatta
atatggaatgctttattctcctattataagaaaaagaaatggggtagcca
atctagagagttaggcactgaaggctgttttgcatctgaggtgactctct
agatactgattgacaatccccatctcctttgctatttgtgcttctagaaa
cacagcctggttttctagcatcatctggaagcctggtatagcagtggttt
taaagaatctcctgattaaatgcagatatgtttatgaaaacagtggtaca
gggttccaggaatgtggatgctacagttgacaagaaatggccaaatactt
agttgagaaaagggttggagaaagaccaataattaaaattgtgtttttta
ccaattaagaggaaataaataaacaggaaatgtcattctttcatctcttc
tgtgtacaatcaaacaaaatgagacatatcaactttttttatttgaagac
agcaaatcaaaagcataacatatactactttgtgctctcttccctcgtct
ctactccatacctgcctccacccatgctctcttctccttctctggtacgc
atggatagagttaattcatgctaaagaaattgaatggaa
atgtgttcagaatggtgacttagaaataaccaataccatcatttatatat
agctagggaacggacaacctcattgtgatgaaaaaaatcaagttgaactt
tgaaaaaatgtgtaagagttgggtggtggtgatgagattcaggtgtgtga
gggtatgagcaagagcacagaagcagaaaactgaaagatgcatttgtagc
aacaagtgaacatgttggcagggattgtataggagacagtactgagagat
cagctgacggtggaaggggaaagggctccgtgaactctatgctgaaagat
ctacttttgtcctgtggaaaaagacatgaattaaagccttgcaaattggg
cagtggcctgatcaaagtcctatcttgttatcaataattagaaactagaa
taaaggaggcacaagcagagcatgcagaatctgccatgataacccagcaa
ttatatgatctgactgatcgggatcaatagcagagtacagtgatgatgat
gatgtatatgtatatgtatatgtatatgtatatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_43126734_43127959
seq2: B6Ng01-333N12.b_50_1238

seq1  GAATTCAGTGGTTAAGAGCACTGACTTATTTCAGAGGGCCTAGGGCCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTTAAGAGCACTGACTTATTTCAGAGGGCCTAGGGCCAAC  50

seq1  TCCCAGCCCCTACGTGGCAGCTCACAACTGTCTGTGACTCCAATTTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCCCCTACGTGGCAGCTCACAACTGTCTGTGACTCCAATTTTAGG  100

seq1  AGATTTGACAGTCTTTTTTGGCTTCTGCAGGTATCAGGCACACATGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGACAGTCTTTTTTGGCTTCTGCAGGTATCAGGCACACATGTGAT  150

seq1  GAGCGGATATATATTCAGGCAAAACACTCACACACGGGCTGAAGAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGATATATATTCAGGCAAAACACTCACACACGGGCTGAAGAGATGG  200

seq1  CTCAGCAGTTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAAT  250

seq1  TCCAGCAACCACATGGTGACTCACAACCATCCATAATGAGATCTGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACCACATGGTGACTCACAACCATCCATAATGAGATCTGATGCC  300

seq1  CTCTTCTGAGGTGTCTGAAGACAGCTACAGTGCACTTACCTATAATAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGAGGTGTCTGAAGACAGCTACAGTGCACTTACCTATAATAAAT  350

seq1  AAATAAATATTAAAAAAAAAAGTTAGGACACAACTTAGCCGGGCCGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATATTAAAAAAAAAAGTTAGGACACAACTTAGCCGGGCCGTGGT  400

seq1  GGAGCACAACTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACAACTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTC  450

seq1  TGAGTTCAAGACCAGCCTGGTCTACAAAGTGAGTTCCAGAATAGCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGACCAGCCTGGTCTACAAAGTGAGTTCCAGAATAGCCAGGG  500

seq1  CTATAAAGAGAAACCCTGTCTCGAAAAAACAAACAAAAAAACCACTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGAGAAACCCTGTCTCGAAAAAACAAACAAAAAAACCACTCACA  550

seq1  CACATAGAAAAGTAAATACATGTTTAAACAGTTAATTAGGAAGGTTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAAAGTAAATACATGTTTAAACAGTTAATTAGGAAGGTTATTA  600

seq1  ATATGGAATGCTTTATTCTCCTATTATAAGAAAAAGAAATGGGGTAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAATGCTTTATTCTCCTATTATAAGAAAAAGAAATGGGGTAGCCA  650

seq1  ATCTAGAGAGTTAGGCACTGAAGGCTGTTTTGCATCTGAGGTGACTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGAGTTAGGCACTGAAGGCTGTTTTGCATCTGAGGTGACTCTCT  700

seq1  AGATACTGATTGACAATCCCCATCTCCTTTGCTATTTGTGCTTCTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGATTGACAATCCCCATCTCCTTTGCTATTTGTGCTTCTAGAAA  750

seq1  CACAGCCTGGTTTTCTAGCATCATCTGGAAGCCTGGTATAGCAGTGGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGGTTTTCTAGCATCATCTGGAAGCCTGGTATAGCAGTGGTTT  800

seq1  TAAAGAATCTCCTGATTAAATGCAGATATGTTTATGAAAACAGTGGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATCTCCTGATTAAATGCAGATATGTTTATGAAAACAGTGGTACA  850

seq1  GGGTTCCAGGAATGTGGATGCTACAGTTGACAAGAAATGGCCAAATACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCCAGGAATGTGGATGCTACAGTTGACAAGAAATGGCCAAATACTT  900

seq1  AGTTGAGAAAAGGGTTGGAGAAAGACCAATAATTAAAATTGTGTTTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAAAAGGGTTGGAGAAAGACCAATAATTAAAATTGTGTTTTTTA  950

seq1  CCAATTAAGAGGAAATAAAATAAACAGGAAATGTCATTCTTTTCATCTCT  1000
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  CCAATTAAGAGGAAAT-AAATAAACAGGAAATGTCATTC-TTTCATCTCT  998

seq1  TCCTGTGTAACAATCAAACAAAAATGAGACATATCCAAACTTTTTTTATT  1050
      | |||||| |||||||||| |||||||||||||||  |||||||||||||
seq2  T-CTGTGT-ACAATCAAAC-AAAATGAGACATATC--AACTTTTTTTATT  1043

seq1  TGGAAGACAGGCAAAATCAAAAAGCATAAACCATATACTACTTTGTTGCT  1100
      | ||||||||   ||||| ||||||||||  |||||||||||||| ||||
seq2  T-GAAGACAG--CAAATC-AAAAGCATAA--CATATACTACTTTG-TGCT  1086

seq1  CTCTTCCC-CCTCCCT-CTCCTTACCTTCCCCTTCCTCGCCTCCCACCCC  1148
      |||||||| | || || |||| |||||           ||||||   |||
seq2  CTCTTCCCTCGTCTCTACTCCATACCT-----------GCCTCC--ACCC  1123

seq1  ATGCTCCTCTTCCTCCCTCTCCTTCTTTGGTACAGCATTGATAGAGTTAA  1198
      ||||| ||||       ||||||||| |||||| |||| |||||||||||
seq2  ATGCT-CTCT-------TCTCCTTCTCTGGTAC-GCATGGATAGAGTTAA  1164

seq1  TTCATTGTATAAAAGAAATAGAATGGAA  1226
      |||||  |   |||||||| ||||||||
seq2  TTCATGCT---AAAGAAATTGAATGGAA  1189

seq1: chr16_43271698_43272239
seq2: B6Ng01-333N12.g_67_608 (reverse)

seq1  TACATATACATATACATATACATATACATATACATCATCATCATCACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATACATATACATATACATATACATATACATCATCATCATCACTGT  50

seq1  ACTCTGCTATTGATCCCGATCAGTCAGATCATATAATTGCTGGGTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTATTGATCCCGATCAGTCAGATCATATAATTGCTGGGTTATCA  100

seq1  TGGCAGATTCTGCATGCTCTGCTTGTGCCTCCTTTATTCTAGTTTCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATTCTGCATGCTCTGCTTGTGCCTCCTTTATTCTAGTTTCTAAT  150

seq1  TATTGATAACAAGATAGGACTTTGATCAGGCCACTGCCCAATTTGCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAACAAGATAGGACTTTGATCAGGCCACTGCCCAATTTGCAAGG  200

seq1  CTTTAATTCATGTCTTTTTCCACAGGACAAAAGTAGATCTTTCAGCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCATGTCTTTTTCCACAGGACAAAAGTAGATCTTTCAGCATAG  250

seq1  AGTTCACGGAGCCCTTTCCCCTTCCACCGTCAGCTGATCTCTCAGTACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACGGAGCCCTTTCCCCTTCCACCGTCAGCTGATCTCTCAGTACTG  300

seq1  TCTCCTATACAATCCCTGCCAACATGTTCACTTGTTGCTACAAATGCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATACAATCCCTGCCAACATGTTCACTTGTTGCTACAAATGCATC  350

seq1  TTTCAGTTTTCTGCTTCTGTGCTCTTGCTCATACCCTCACACACCTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTTTCTGCTTCTGTGCTCTTGCTCATACCCTCACACACCTGAAT  400

seq1  CTCATCACCACCACCCAACTCTTACACATTTTTTCAAAGTTCAACTTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACCACCACCCAACTCTTACACATTTTTTCAAAGTTCAACTTGAT  450

seq1  TTTTTTCATCACAATGAGGTTGTCCGTTCCCTAGCTATATATAAATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCATCACAATGAGGTTGTCCGTTCCCTAGCTATATATAAATGATG  500

seq1  GTATTGGTTATTTCTAAGTCACCATTCTGAACACATGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGGTTATTTCTAAGTCACCATTCTGAACACATGAATTC  542