BAC Information

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BAC

Clone NameB6Ng01-333O19
Chromosome16 (Build37)
Map Location 21,937,342 - 22,079,807
singlet/doubletdoublet
Overlap geneTmem41a, Liph, Senp2, EG239760, Igf2bp2
Upstream geneLOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037
Downstream geneEG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333O19.bB6Ng01-333O19.g
ACCGA119557GA119558
length946980
definitionB6Ng01-333O19.b B6Ng01-333O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,078,863 - 22,079,807)(21,937,342 - 21,938,324)
sequence
gaattcataagctgaggttggaaaagaacttgaaaaaaaattgggtttcc
attcataaagagtgagcttcgtgagtcttgggcgctaagtcggcagccgt
cctactgcttgcccctctgtcttttcagggctgaggaggttcctctgaaa
atcctggcccacaatggcttcgttggaagactgattggcaaagaaggcag
aaacctgaagaaaatagaacatgagacagggaccaagataaccatctcat
cgtaagctaccccttctgactgactgtgcaggagagagcggtgctggtgt
tcctgtctcctgcttgtcttcagaggggaatacactcagctgtaccctga
gcatcatgggaagcagagccacagtgtagccacatagcccgccgagcact
cactggcgtgagggaggccctggcctccatccccggcaccatgaaattct
taaaataaaaattagtagccgggtgtggtggcgcatgcctttaatcctag
aactcgggaggcagaggcaggtggatttctgagttcgaggccagcctggt
ctacagagtgagttccaggacagccagggctatacagagaaaccctgtct
cgaaaaactaaaaaaaaaaaattagccaggtctgtgatctaggctttcag
aagtcggctgaaccaaaagttaagggcagcgttagctgtacagtgaactg
aaggggagacttagtgagactcttctcaaagcataaggtaagacttgggg
ctggggctacagctcaggggtagaaggctttttcctacacgagtgaggcc
ttaggttcaagccacagcaccctcttcccctcacatatacatacatgtga
ccaatgtcactaggaagacttagatatcggggattctgtgcagtagtgtt
aggagatatcagtctttatctttatcaggggggtgtgtggtgtggg
gaattcagggagactcaagcaggaggacttacatgagtttgaggacaaaa
tacaactgggctggggacacatctcagaagtaaggcacttgccctgccag
cctaagggcctgcatgtgctcaccaatacccagctcaccaaacaaacaaa
cagcctgcggcagaggcacaagcctggaaccccagtactgggagacagaa
ggatccaggagcccagctactctagccgactcagtgtgctctaggctcag
taaaagactcttcaaacacaaagtaggcagtgattgaggaagatatcagg
agtaaacctctggcttccacacgtgctcacacatacacaagcctacacac
acacaagcacagacacacacacacaagcacacgcataaaattaagtaaag
taataaataaaaacattgttcccgggaaccgaagcagtcagaattttaac
tcaaagtcacagagccacagagcaggtaatgaccagaactgaggcttggt
cacaggtctgtgcttcctaaagacatcataagaaccagtccttcccagct
cccaggtgggaagaaggagcactgtgggaaacttcaggtccacactgctc
tccgcccatgagctgatgctccgggacccagtgctccaggtgtgcccccc
cccccccaccttaccttcttctgcagcagggccactttatcaggaaagta
ggagatgaccagctgtttgccgaaaagactggaaagcaggtagcagcctg
tggcacccacggatgtcaacacgcagcacagcaaaagtcccagccatggc
ccgaacaaaggcaccagccaaaacattctgcaaagaaagcagcctcagcc
acgggacatctagcagcttccaggggggcttgtcctggtggggcctgtgc
acctgctccttccctttcagtgactttcacagccccaaacccaaggccca
ctctaaagagtgaatgaagcggtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_22078863_22079807
seq2: B6Ng01-333O19.b_48_993 (reverse)

seq1  CCCACACCACACACCCCCCTGATAAAGATAAAGACTGATATCTCCTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCACACACCCCCCTGATAAAGATAAAGACTGATATCTCCTAACA  50

seq1  CTACTGCACAGAATCCCCGATATCTAAGTCTTCCTAGTGACATTGGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCACAGAATCCCCGATATCTAAGTCTTCCTAGTGACATTGGTCAC  100

seq1  ATGTATGTATATGTGAGGGGAAGAGGGTGCTGTGGCTTGAACCTAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATATGTGAGGGGAAGAGGGTGCTGTGGCTTGAACCTAAGGCC  150

seq1  TCACTCGTGTAGG-AAAAGCCTTCTACCCCTGAGCTGTAGCCCCAGCCCC  199
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCACTCGTGTAGGAAAAAGCCTTCTACCCCTGAGCTGTAGCCCCAGCCCC  200

seq1  AAGTCTTACCTTATGCTTTGAGAAGAGTCTCACTAAGTCTCCCCTTCAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTACCTTATGCTTTGAGAAGAGTCTCACTAAGTCTCCCCTTCAGT  250

seq1  TCACTGTACAGCTAACGCTGCCCTTAACTTTTGGTTCAGCCGACTTCTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTACAGCTAACGCTGCCCTTAACTTTTGGTTCAGCCGACTTCTGA  300

seq1  AAGCCTAGATCACAGACCTGGCTAATTTTTTTTTTTTAGTTTTTCGAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGATCACAGACCTGGCTAATTTTTTTTTTTTAGTTTTTCGAGAC  350

seq1  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  400

seq1  GGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTTCTAG  450

seq1  GATTAAAGGCATGCGCCACCACACCCGGCTACTAATTTTTATTTTAAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGCGCCACCACACCCGGCTACTAATTTTTATTTTAAGAA  500

seq1  TTTCATGGTGCCGGGGATGGAGGCCAGGGCCTCCCTCACGCCAGTGAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTGCCGGGGATGGAGGCCAGGGCCTCCCTCACGCCAGTGAGTG  550

seq1  CTCGGCGGGCTATGTGGCTACACTGTGGCTCTGCTTCCCATGATGCTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCGGGCTATGTGGCTACACTGTGGCTCTGCTTCCCATGATGCTCAG  600

seq1  GGTACAGCTGAGTGTATTCCCCTCTGAAGACAAGCAGGAGACAGGAACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGCTGAGTGTATTCCCCTCTGAAGACAAGCAGGAGACAGGAACAC  650

seq1  CAGCACCGCTCTCTCCTGCACAGTCAGTCAGAAGGGGTAGCTTACGATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCGCTCTCTCCTGCACAGTCAGTCAGAAGGGGTAGCTTACGATGA  700

seq1  GATGGTTATCTTGGTCCCTGTCTCATGTTCTATTTTCTTCAGGTTTCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTATCTTGGTCCCTGTCTCATGTTCTATTTTCTTCAGGTTTCTGC  750

seq1  CTTCTTTGCCAATCAGTCTTCCAACGAAGCCATTGTGGGCCAGGATTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCCAATCAGTCTTCCAACGAAGCCATTGTGGGCCAGGATTTTC  800

seq1  AGAGGAACCTCCTCAGCCCTGAAAAGACAGAGGGGCAAGCAGTAGGACGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAACCTCCTCAGCCCTGAAAAGACAGAGGGGCAAGCAGTAGGACGG  850

seq1  CTGCCGACTTAGCGCCCAAGACTCACGAAGCTCACTCTTTATGAATGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGACTTAGCGCCCAAGACTCACGAAGCTCACTCTTTATGAATGGAA  900

seq1  ACCCAATTTTTTTTCAAGTTCTTTTCCAACCTCAGCTTATGAATTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAATTTTTTTTCAAGTTCTTTTCCAACCTCAGCTTATGAATTC  946

seq1: chr16_21937342_21938324
seq2: B6Ng01-333O19.g_67_1046

seq1  GAATTCAGGGAGACTCAAGCAGGAGGACTTACATGAGTTTGAGGACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGACTCAAGCAGGAGGACTTACATGAGTTTGAGGACAAAA  50

seq1  TACAACTGGGCTGGGGACACATCTCAGAAGTAAGGCACTTGCCCTGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTGGGCTGGGGACACATCTCAGAAGTAAGGCACTTGCCCTGCCAG  100

seq1  CCTAAGGGCCTGCATGTGCTCACCAATACCCAGCTCACCAAACAAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGGCCTGCATGTGCTCACCAATACCCAGCTCACCAAACAAACAAA  150

seq1  CAGCCTGCGGCAGAGGCACAAGCCTGGAACCCCAGTACTGGGAGACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCGGCAGAGGCACAAGCCTGGAACCCCAGTACTGGGAGACAGAA  200

seq1  GGATCCAGGAGCCCAGCTACTCTAGCCGACTCAGTGTGCTCTAGGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGGAGCCCAGCTACTCTAGCCGACTCAGTGTGCTCTAGGCTCAG  250

seq1  TAAAAGACTCTTCAAACACAAAGTAGGCAGTGATTGAGGAAGATATCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACTCTTCAAACACAAAGTAGGCAGTGATTGAGGAAGATATCAGG  300

seq1  AGTAAACCTCTGGCTTCCACACGTGCTCACACATACACAAGCCTACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACCTCTGGCTTCCACACGTGCTCACACATACACAAGCCTACACAC  350

seq1  ACACAAGCACAGACACACACACACAAGCACACGCATAAAATTAAGTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGCACAGACACACACACACAAGCACACGCATAAAATTAAGTAAAG  400

seq1  TAATAAATAAAAACATTGTTCCCGGGAACCGAAGCAGTCAGAATTTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATAAAAACATTGTTCCCGGGAACCGAAGCAGTCAGAATTTTAAC  450

seq1  TCAAAGTCACAGAGCCACAGAGCAGGTAATGACCAGAACTGAGGCTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCACAGAGCCACAGAGCAGGTAATGACCAGAACTGAGGCTTGGT  500

seq1  CACAGGTCTGTGCTTCCTAAAGACATCATAAGAACCAGTCCTTCCCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCTGTGCTTCCTAAAGACATCATAAGAACCAGTCCTTCCCAGCT  550

seq1  CCCAGGTGGGAAGAAGGAGCACTGTGGGAAACTTCAGGTCCACACTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGGGAAGAAGGAGCACTGTGGGAAACTTCAGGTCCACACTGCTC  600

seq1  TCCGCCCATGAGCTGATGCTCCGGGACCCAGTGCTCCAGGTGTGCCCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCATGAGCTGATGCTCCGGGACCCAGTGCTCCAGGTGTGCCCCCC  650

seq1  CCCCCCCACCTTACCTTCTTCTGCAGCAGGGCCACTTTATCAGGAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCACCTTACCTTCTTCTGCAGCAGGGCCACTTTATCAGGAAAGTA  700

seq1  GGAGATGACCAGCTGTTTGCCGAAAAGACTGGAAAGCAGGTAGCAGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACCAGCTGTTTGCCGAAAAGACTGGAAAGCAGGTAGCAGCCTG  750

seq1  TGGCACCCACGGATGTCAACACGCAGCACAGCAAAAGTCCCAGCCATGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCCACGGATGTCAACACGCAGCACAGCAAAAGTCCCAGCCATGGC  800

seq1  CCGAAC-AAGGCACCAGCCAAAACATTCTGCAAAGAAAGCAGCCTCAGCC  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACAAAGGCACCAGCCAAAACATTCTGCAAAGAAAGCAGCCTCAGCC  850

seq1  ACGGGACATCTAGCAGCTTCCAGGGGGGCTTGTCCTGGGTGGGGCCTGTG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACGGGACATCTAGCAGCTTCCAGGGGGGCTTGTCCT-GGTGGGGCCTGTG  899

seq1  CACCTGCTCCTTCCCTTTCAGTGACTTTCACAGCCCCAAACCCAAGGCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTCCTTCCCTTTCAGTGACTTTCACAGCCCCAAACCCAAGGCCC  949

seq1  ACTCTAAAGAGGTGAATGGAAGCGGGTGTGTGTG  983
      |||||||||| |||||| ||||| ||||||||||
seq2  ACTCTAAAGA-GTGAAT-GAAGC-GGTGTGTGTG  980