BAC Information

Click to search

BAC

Clone NameB6Ng01-335F21
Chromosome16 (Build37)
Map Location 72,282,233 - 72,381,238
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335F21.bB6Ng01-335F21.g
ACCGA120620GA120621
length745966
definitionB6Ng01-335F21.b B6Ng01-335F21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,282,233 - 72,282,977)(72,380,636 - 72,381,238)
sequence
gaattctaataattaaattatatataccatgcatataaaataaaacagtg
tggttttaatgacaaatcatattccttaatgtcttattggggtaattctt
taaaataccaccaaaaaagatagataaggtttttgattatatagcaaaac
aatcttactaactgtggacagatgttgagttaactgggcagacatttgtc
acattcattaaaagtaaagcagaaggactttcttacttttgctaagcatc
aagacatatcttgtctcttttgtgtgacttcaactgtggtcactttgtac
aaataagaattttaaaatccccttctttgaaaaataaaaaaatcaaaatt
tctggtgattatataattctacagtgtttcacatttttttcccaactcta
aagagagctattatccttcaatcttctcctttatttaggcttctataagt
tatagggacaatgagctgaggcaagcaagatacaagccctacctgctcaa
catgacttccattgatttcaggaccatgtgggcactactttcacaaaaac
actgcaaacgtttaattaaggtatcacaacagtgaattatgttgaaatac
actcaaagccattcttcattctaactctcattgtaagaaaaagaaacctg
tcaggcaaacttgcagcagtttagaaatattcttacaacaaaatataaga
gaagtaggcagggtacatggttgtgtttggagggggaaagggaaa

gaattcacttacttgttgccatagagcatgcatcccttcttgatttcctt
tagttactttcaaatattttgaacagctcgtttcctttcagtgtggaaca
ctagttgaagtggaaatgtaagggttctttgatggtcagttgtgttgggt
ggcgttttgttgggacaaacacgtgaaggagtgtttccctgaagcagaca
caggtaaaaggaccctctactaaaacaaacgcatgaaaggacacataatg
aaggatttcttagctaacgacacacatgtattggttcaccttatattatt
acatagttgtcggggctctatagagagaaacacaccaaaaaacttcaggt
ggtgtgctgcagctccttgttgcatccttggactcaggctgtttgacaaa
aagatgtcagctgagacaagatttatgctgggaaaagacccatggaggac
aagagatgtttcaggggatatataaaaactcaataggcaatgatggaggc
tgaacttggcttgctggtacagctagctaaacaacacttgttagttagtc
tggtgtcttcactgatcttccctttgctgagagagacataccggagaact
attcctaatgttctcattggccctggtccttctcgttgactcctgtcaag
gctgaggcctgtctgtcttttttaggtagtgatactgttgttggttcatg
tttgctatcccaagtctaccaaactagactgctggtatatccatgaaggg
tttatgagtgggtcgagctgctgctgctgctgctgatctgtacactgaac
tgaagattttcagagactacagatgggcgttacagcaaaagaatcacttc
taaacaggtccactgtccacgtatcctttcttttccactacctcagtgga
taatggttagatgaagggttaaagtatctaagaatcatcattaaaaataa
ggtttaaacattaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72282233_72282977
seq2: B6Ng01-335F21.b_46_790

seq1  GAATTCTAATAATTAAATTATATATACCATGCATATAAAATAAAACAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATAATTAAATTATATATACCATGCATATAAAATAAAACAGTG  50

seq1  TGGTTTTAATGACAAATCATATTCCTTAATGTCTTATTGGGGTAATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTAATGACAAATCATATTCCTTAATGTCTTATTGGGGTAATTCTT  100

seq1  TAAAATACCACCAAAAAAGATAGATAAGGTTTTTGATTATATAGCAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACCACCAAAAAAGATAGATAAGGTTTTTGATTATATAGCAAAAC  150

seq1  AATCTTACTAACTGTGGACAGATGTTGAGTTAACTGGGCAGACATTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACTAACTGTGGACAGATGTTGAGTTAACTGGGCAGACATTTGTC  200

seq1  ACATTCATTAAAAGTAAAGCAGAAGGACTTTCTTACTTTTGCTAAGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATTAAAAGTAAAGCAGAAGGACTTTCTTACTTTTGCTAAGCATC  250

seq1  AAGACATATCTTGTCTCTTTTGTGTGACTTCAACTGTGGTCACTTTGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATATCTTGTCTCTTTTGTGTGACTTCAACTGTGGTCACTTTGTAC  300

seq1  AAATAAGAATTTTAAAATCCCCTTCTTTGAAAAATAAAAAAATCAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAATTTTAAAATCCCCTTCTTTGAAAAATAAAAAAATCAAAATT  350

seq1  TCTGGTGATTATATAATTCTACAGTGTTTCACATTTTTTTCCCAACTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGATTATATAATTCTACAGTGTTTCACATTTTTTTCCCAACTCTA  400

seq1  AAGAGAGCTATTATCCTTCAATCTTCTCCTTTATTTAGGCTTCTATAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCTATTATCCTTCAATCTTCTCCTTTATTTAGGCTTCTATAAGT  450

seq1  TATAGGGACAATGAGCTGAGGCAAGCAAGATACAAGCCCTACCTGCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGACAATGAGCTGAGGCAAGCAAGATACAAGCCCTACCTGCTCAA  500

seq1  CATGACTTCCATTGATTTCAGGACCATGTGGGCACTACTTTCACAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTCCATTGATTTCAGGACCATGTGGGCACTACTTTCACAAAAAC  550

seq1  ACTGCAAACGTTTAATTAAGGTATCACAACAGTGAATTATGTTGAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAACGTTTAATTAAGGTATCACAACAGTGAATTATGTTGAAATAC  600

seq1  ACTCAAAGCCATTCTTCATTCTAACTCTCATTGTAAGAAAAAGAAACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGCCATTCTTCATTCTAACTCTCATTGTAAGAAAAAGAAACCTG  650

seq1  TCAGGCAAACTTGCAGCAGTTTAGAAATATTCTTACAACAAAATATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAAACTTGCAGCAGTTTAGAAATATTCTTACAACAAAATATAAGA  700

seq1  GAAGTAGGCAGGGTACATGGTTGTGTTTGGAGGGGGAAAGGGAAA  745
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGCAGGGTACATGGTTGTGTTTGGAGGGGGAAAGGGAAA  745


seq1: chr16_72380636_72381238
seq2: B6Ng01-335F21.g_66_668 (reverse)

seq1  AATAGTTCTCCGGTATGTCTCTCTCAGCAAAGGGAAGATCAGTGAAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCTCCGGTATGTCTCTCTCAGCAAAGGGAAGATCAGTGAAGACA  50

seq1  CCAGACTAACTAACAAGTGTTGTTTAGCTAGCTGTACCAGCAAGCCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTAACTAACAAGTGTTGTTTAGCTAGCTGTACCAGCAAGCCAAGT  100

seq1  TCAGCCTCCATCATTGCCTATTGAGTTTTTATATATCCCCTGAAACATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCCATCATTGCCTATTGAGTTTTTATATATCCCCTGAAACATCT  150

seq1  CTTGTCCTCCATGGGTCTTTTCCCAGCATAAATCTTGTCTCAGCTGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTCCATGGGTCTTTTCCCAGCATAAATCTTGTCTCAGCTGACAT  200

seq1  CTTTTTGTCAAACAGCCTGAGTCCAAGGATGCAACAAGGAGCTGCAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCAAACAGCCTGAGTCCAAGGATGCAACAAGGAGCTGCAGCAC  250

seq1  ACCACCTGAAGTTTTTTGGTGTGTTTCTCTCTATAGAGCCCCGACAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGAAGTTTTTTGGTGTGTTTCTCTCTATAGAGCCCCGACAACTA  300

seq1  TGTAATAATATAAGGTGAACCAATACATGTGTGTCGTTAGCTAAGAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAATATAAGGTGAACCAATACATGTGTGTCGTTAGCTAAGAAATC  350

seq1  CTTCATTATGTGTCCTTTCATGCGTTTGTTTTAGTAGAGGGTCCTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTATGTGTCCTTTCATGCGTTTGTTTTAGTAGAGGGTCCTTTTAC  400

seq1  CTGTGTCTGCTTCAGGGAAACACTCCTTCACGTGTTTGTCCCAACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGCTTCAGGGAAACACTCCTTCACGTGTTTGTCCCAACAAAAC  450

seq1  GCCACCCAACACAACTGACCATCAAAGAACCCTTACATTTCCACTTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCAACACAACTGACCATCAAAGAACCCTTACATTTCCACTTCAAC  500

seq1  TAGTGTTCCACACTGAAAGGAAACGAGCTGTTCAAAATATTTGAAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTCCACACTGAAAGGAAACGAGCTGTTCAAAATATTTGAAAGTAA  550

seq1  CTAAAGGAAATCAAGAAGGGATGCATGCTCTATGGCAACAAGTAAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAAATCAAGAAGGGATGCATGCTCTATGGCAACAAGTAAGTGAA  600

seq1  TTC  603
      |||
seq2  TTC  603


| Home | SequenceCutter | Blast | Download |