BAC Information

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BAC

Clone NameB6Ng01-335H08
Chromosome16 (Build37)
Map Location 27,439,897 - 27,572,747
singlet/doubletdoublet
Overlap geneCcdc50
Upstream geneCldn16, LOC100043057, Il1rap, Gm606, Ostn, Uts2d
Downstream geneFgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335H08.bB6Ng01-335H08.g
ACCGA120681GA120682
length228897
definitionB6Ng01-335H08.b B6Ng01-335H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,572,519 - 27,572,747)(27,439,897 - 27,440,792)
sequence
cctttgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgttttgtttttgcagagaatcctgaccataatgtctgcc
tatatggctcaggctgcctacatactgcgaggactcatcctccccttttc
taggaatataaatatactctgctctgcctttctgacagctaaaaatgtat
gactaatgattaatgaggaaatctgtag

gaattccaggcccatggagctacgtaggaaaatctagtgtcaaaaaaaca
aaaaacaaaacaaaatcaaagaaataaaacattaaatttagacgttagtg
aaagaagaaggaggagtagaagggagaggaggaaggagaagaggaaggaa
gaaggaaaagagaaaaaagaaaagaaaaaagaaagaaatgatggggctgg
aacagtagctcagtgaagagcactgcctgctcagaggacccaggcttgat
catagcacccacattgcatcttgactgtgtaactccagtcccagagcact
gcacacatgtttttatagacatacatgcaagaaaaacacccatatgcgca
cacgcaaaatacaataaaaagaaaaaagagaggtaggcatgtttaatcac
atttgcatgataaacaacatacatgtaccttgtaaatatgtctattttga
tgtttctatgtatccattaaaattagtttaaatgagcaaataagacctag
gctatactcagtttgtagaagtattacctagcatgagaaagcctgggtgt
gatcccagcactacagaaactgggtatgtgtgtgtgttgatcctcacagt
agggaagttgaggaagatcagaaagccaatgtcactcttgtccatacagc
atgtttcaagataaggatacaagaaaccaggcctcaaggagaggctaaaa
caaaaatagaaaaatgcactatttcaaaagctctgaattaataaattttt
ggcttataattctcatttaacatgtattaaaattcactgcactttggaga
cagcctgccttgcatgcatgagtagagctctgatccccaaactcccacaa
actggtcatgcttggtgggcacccgtccttaccttgggaggcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27572519_27572747
seq2: B6Ng01-335H08.b_50_277 (reverse)

seq1  CTTCAGATTTCCTCATTCTTCATTAGTCATACATTTTTAGCTGTCAGAAA  50
      || ||||||||||||||  |||||||||||||||||||||||||||||||
seq2  CTACAGATTTCCTCATTAATCATTAGTCATACATTTTTAGCTGTCAGAAA  50

seq1  GGCAGAGCAGAGTATATTTATATTCCTAGAAATTGGGAGGCTGAGTCCTC  100
      ||||||||||||||||||||||||||||||||  |||||| |||||||||
seq2  GGCAGAGCAGAGTATATTTATATTCCTAGAAAAGGGGAGGATGAGTCCTC  100

seq1  GCAGTCTGTAGGCAGCCTGAGCCATATAGGCAGACATTATTGGTCAGGAT  150
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCAGTATGTAGGCAGCCTGAGCCATATAGGCAGACATTA-TGGTCAGGAT  149

seq1  TCTCTGCAAAAACAAAACACACACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAAAAACAAAACACACACACACACACACACACACACACACACAC  199

seq1  ACACACACGCACACACACACACACAAAGG  229
      |||||||||||||||||||||||||||||
seq2  ACACACACGCACACACACACACACAAAGG  228


seq1: chr16_27439897_27440792
seq2: B6Ng01-335H08.g_65_961

seq1  GAATTCCAGGCCCATGGAGCTACGTAGGAAAATCTAGTGTCAAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCCATGGAGCTACGTAGGAAAATCTAGTGTCAAAAAAACA  50

seq1  AAAAACAAAACAAAATCAAAGAAATAAAACATTAAATTTAGACGTTAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAAATCAAAGAAATAAAACATTAAATTTAGACGTTAGTG  100

seq1  AAAGAAGAAGGAGGAGTAGAAGGGAGAGGAGGAAGGAGAAGAGGAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGGAGGAGTAGAAGGGAGAGGAGGAAGGAGAAGAGGAAGGAA  150

seq1  GAAGGAAAAGAGAAAAAAGAAAAGAAAAAAGAAAGAAATGATGGGGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGAGAAAAAAGAAAAGAAAAAAGAAAGAAATGATGGGGCTGG  200

seq1  AACAGTAGCTCAGTGAAGAGCACTGCCTGCTCAGAGGACCCAGGCTTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGCTCAGTGAAGAGCACTGCCTGCTCAGAGGACCCAGGCTTGAT  250

seq1  CATAGCACCCACATTGCATCTTGACTGTGTAACTCCAGTCCCAGAGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCACCCACATTGCATCTTGACTGTGTAACTCCAGTCCCAGAGCACT  300

seq1  GCACACATGTTTTTATAGACATACATGCAAGAAAAACACCCATATGCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATGTTTTTATAGACATACATGCAAGAAAAACACCCATATGCGCA  350

seq1  CACGCAAAATACAATAAAAAGAAAAAAGAGAGGTAGGCATGTTTAATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAAAATACAATAAAAAGAAAAAAGAGAGGTAGGCATGTTTAATCAC  400

seq1  ATTTGCATGATAAACAACATACATGTACCTTGTAAATATGTCTATTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATGATAAACAACATACATGTACCTTGTAAATATGTCTATTTTGA  450

seq1  TGTTTCTATGTATCCATTAAAATTAGTTTAAATGAGCAAATAAGACCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATGTATCCATTAAAATTAGTTTAAATGAGCAAATAAGACCTAG  500

seq1  GCTATACTCAGTTTGTAGAAGTATTACCTAGCATGAGAAAGCCTGGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACTCAGTTTGTAGAAGTATTACCTAGCATGAGAAAGCCTGGGTGT  550

seq1  GATCCCAGCACTACAGAAACTGGGTATGTGTGTGTGTTGATCCTCACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAGCACTACAGAAACTGGGTATGTGTGTGTGTTGATCCTCACAGT  600

seq1  AGGGAAGTTGAGGAAGATCAGAAAGCCAATGTCACTCTTGTCCATACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTTGAGGAAGATCAGAAAGCCAATGTCACTCTTGTCCATACAGC  650

seq1  ATG-TTCAAGATAAGGATACAAGAAACCAGGCCTCAAGGAGAGGCTAAAA  699
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCAAGATAAGGATACAAGAAACCAGGCCTCAAGGAGAGGCTAAAA  700

seq1  CAAAAATAG-AAAATGCACTATTTCAAAAGCTCTGAATTAATAAA-TTTT  747
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  CAAAAATAGAAAAATGCACTATTTCAAAAGCTCTGAATTAATAAATTTTT  750

seq1  GGCTTATAATTCTCATTTAACATGTATTAAAA-TCACTGCACTTTGGAGA  796
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCTTATAATTCTCATTTAACATGTATTAAAATTCACTGCACTTTGGAGA  800

seq1  CAGCCTGCCTTGCATGCATGAGTTAGAGCTCTGATCCCCAAACTCCCACA  846
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  CAGCCTGCCTTGCATGCATGAG-TAGAGCTCTGATCCCCAAACTCCCAC-  848

seq1  AAACTGGTCATGCTTGGTGGGCACCCGTCCTTACACTTGGGAGGCAGAGA  896
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAACTGGTCATGCTTGGTGGGCACCCGTCCTTAC-CTTGGGAGGCAGAGA  897


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