BAC Information

Click to search

BAC

Clone NameB6Ng01-335K19
Chromosome16 (Build37)
Map Location 30,762,063 - 30,892,744
singlet/doubletdoublet
Overlap geneLOC100043122
Upstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623
Downstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335K19.bB6Ng01-335K19.g
ACCGA120825GA120826
length1,0011,133
definitionB6Ng01-335K19.b B6Ng01-335K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,892,161 - 30,892,744)(30,762,063 - 30,763,194)
sequence
gaattcaatcactggtcatgcctcattgcaagggggctgggatatgtata
tcacctgtgtccctagaggatgcacaaacactaccacttctgccacattg
ataattctctccctctgtgaagatagatggtgtctaagcctgggtcatca
ggaaggctccacagagaagggagcctgggtctggaagatgcaagcttctc
tctcagatgcactggatgccattagtctatggccatccactttggctgct
ccccttcctcttgtcccatctgcccttctcacatagcccaagatgcatgg
catggaggtgatcctacagatcctacagatctagtggagtgggctctccc
ctcattggggagggtcaaggaggccatcccactcttattcatggcaagaa
ggtaagtggttgaagcctttctttgacatgaatggtggtggatgcagaga
ctcgtgactgcccaagatactgataactagggatggttgaggggttgtct
ataaagataggttttaaaaactttttactggttcattgtgagtttcacat
catgcacccaaaaaccacttatttccccctctcctcatacccatccttca
tccttgcaacctccacagccccgtcaacagagagaaaaaaatcttgttgt
ggaagctgtagtagatcacagtgtatcccacactatactcttgttcacac
ttctttccttgcaaatgttcattataatgacttgttggtttggtccaagg
cctctggcttctgctactctatcaatatgcaacctcactgggagtcctct
cctgaagtggaagtttctggtcactttggagactcagttgtgtcatgtga
tgtttgttttgctgaggcagacacgtaagagaatgtttgctaagaacaga
ctcatgtttttctggaaactgtcttgtgaaagggcatgtgctattttgat
aggtgaatgcttagagggcacgtgatacttagaaagaataaattattaac
c
gaattccatgaaagtatctgataaactgaactatcataagaatgtgattt
ctttctgttccctcagcctggaataatgaccagcttcaaggccccagagg
aggaagtgacagatgcagagtcaccccataagttacggcagaacaaggcc
tagaacccaggattttaaaaaattgaattcagatttctttctgctacccc
caaccaatcaatcagtccatgttcgctgtgctggtatcttggcatccagt
aaagtgctgaacaaggttcgtgcattaatcttgcaaagctacttgtccct
cctggaaaacatcatttcttctaggcagaactcatttaaaccatgcaaaa
ggccacaccagggaagggaatggcttggatacttgactaaatttatgaaa
attacataccccacattacctaggggctctggaaatttctgcaaaaactg
gagcccagccttggcctccttctgtggcttcccctgcctaccctctcccc
tcccccacccagcccctcccctgagccccactgccctatttgcttcttcc
tctctctgttttctccttttcctgtctgtccctctttcatttctcagtga
tttaatgactgtgtgcccaagtgtcagcatttaattagtgtccagaaaaa
tatttatttaggatgaatgaatgaatgaatgaatgaatacatttagtcaa
tcctcacagttttgggttttcggggacacgggacctggtttcaactccta
agatgctgagtgatgtttgcagatattgtgggtggagaaaaatatgtggg
cattgccgtgagacaaatatccctcaggaacctggctctgtgtgggtgtg
ggcaaagggcacagctaggctggggccctgttcccttgtgagtatattga
gggtattaatgtctgctcatgaggctgtccagcatagaacaggcatggcg
tatgatcattcatgattaggaccatccgaagaagcacacagatcaagaaa
acaaggactaggctgagccttcatgtcagttgactttcttgtctgaacga
acagaacacttaaatctatcttgtgacatcctctgaggcctcccttttta
gagttctgccagcttggtccccagaccagacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30892161_30892744
seq2: B6Ng01-335K19.b_47_630 (reverse)

seq1  GGAGAGGGGGAAATAAGTGGTTTTTGGGTGCATGATGTGAAACTCACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGGGAAATAAGTGGTTTTTGGGTGCATGATGTGAAACTCACAAT  50

seq1  GAACCAGTAAAAAGTTTTTAAAACCTATCTTTATAGACAACCCCTCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGTAAAAAGTTTTTAAAACCTATCTTTATAGACAACCCCTCAACC  100

seq1  ATCCCTAGTTATCAGTATCTTGGGCAGTCACGAGTCTCTGCATCCACCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGTTATCAGTATCTTGGGCAGTCACGAGTCTCTGCATCCACCAC  150

seq1  CATTCATGTCAAAGAAAGGCTTCAACCACTTACCTTCTTGCCATGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGTCAAAGAAAGGCTTCAACCACTTACCTTCTTGCCATGAATAA  200

seq1  GAGTGGGATGGCCTCCTTGACCCTCCCCAATGAGGGGAGAGCCCACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGATGGCCTCCTTGACCCTCCCCAATGAGGGGAGAGCCCACTCCA  250

seq1  CTAGATCTGTAGGATCTGTAGGATCACCTCCATGCCATGCATCTTGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTGTAGGATCTGTAGGATCACCTCCATGCCATGCATCTTGGGCT  300

seq1  ATGTGAGAAGGGCAGATGGGACAAGAGGAAGGGGAGCAGCCAAAGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAAGGGCAGATGGGACAAGAGGAAGGGGAGCAGCCAAAGTGGAT  350

seq1  GGCCATAGACTAATGGCATCCAGTGCATCTGAGAGAGAAGCTTGCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGACTAATGGCATCCAGTGCATCTGAGAGAGAAGCTTGCATCTT  400

seq1  CCAGACCCAGGCTCCCTTCTCTGTGGAGCCTTCCTGATGACCCAGGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCAGGCTCCCTTCTCTGTGGAGCCTTCCTGATGACCCAGGCTTA  450

seq1  GACACCATCTATCTTCACAGAGGGAGAGAATTATCAATGTGGCAGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATCTATCTTCACAGAGGGAGAGAATTATCAATGTGGCAGAAGTG  500

seq1  GTAGTGTTTGTGCATCCTCTAGGGACACAGGTGATATACATATCCCAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTTGTGCATCCTCTAGGGACACAGGTGATATACATATCCCAGCC  550

seq1  CCCTTGCAATGAGGCATGACCAGTGATTGAATTC  584
      ||||||||||||||||||||||||||||||||||
seq2  CCCTTGCAATGAGGCATGACCAGTGATTGAATTC  584

seq1: chr16_30762063_30763194
seq2: B6Ng01-335K19.g_66_1198

seq1  GAATTCCATGAAAGTATCTGATAAACTGAACTATCATAAGAATGTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAAGTATCTGATAAACTGAACTATCATAAGAATGTGATTT  50

seq1  CTTTCTGTTCCCTCAGCCTGGAATAATGACCAGCTTCAAGGCCCCAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTCCCTCAGCCTGGAATAATGACCAGCTTCAAGGCCCCAGAGG  100

seq1  AGGAAGTGACAGATGCAGAGTCACCCCATAAGTTACGGCAGAACAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGACAGATGCAGAGTCACCCCATAAGTTACGGCAGAACAAGGCC  150

seq1  TAGAACCCAGGATTTTAAAAAATTGAATTCAGATTTCTTTCTGCTACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCCAGGATTTTAAAAAATTGAATTCAGATTTCTTTCTGCTACCCC  200

seq1  CAACCAATCAATCAGTCCATGTTCGCTGTGCTGGTATCTTGGCATCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATCAATCAGTCCATGTTCGCTGTGCTGGTATCTTGGCATCCAGT  250

seq1  AAAGTGCTGAACAAGGTTCGTGCATTAATCTTGCAAAGCTACTTGTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTGAACAAGGTTCGTGCATTAATCTTGCAAAGCTACTTGTCCCT  300

seq1  CCTGGAAAACATCATTTCTTCTAGGCAGAACTCATTTAAACCATGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAACATCATTTCTTCTAGGCAGAACTCATTTAAACCATGCAAAA  350

seq1  GGCCACACCAGGGAAGGGAATGGCTTGGATACTTGACTAAATTTATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACCAGGGAAGGGAATGGCTTGGATACTTGACTAAATTTATGAAA  400

seq1  ATTACATACCCCACATTACCTAGGGGCTCTGGAAATTTCTGCAAAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATACCCCACATTACCTAGGGGCTCTGGAAATTTCTGCAAAAACTG  450

seq1  GAGCCCAGCCTTGGCCTCCTTCTGTGGCTTCCCCTGCCTACCCTCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGCCTTGGCCTCCTTCTGTGGCTTCCCCTGCCTACCCTCTCCCC  500

seq1  TCCCCCACCCAGCCCCTCCCCTGAGCCCCACTGCCCTATTTGCTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCAGCCCCTCCCCTGAGCCCCACTGCCCTATTTGCTTCTTCC  550

seq1  TCTCTCTGTTTTCTCCTTTTCCTGTCTGTCCCTCTTTCATTTCTCAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTTTTCTCCTTTTCCTGTCTGTCCCTCTTTCATTTCTCAGTGA  600

seq1  TTTAATGACTGTGTGCCCAAGTGTCAGCATTTAATTAGTGTCCAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGACTGTGTGCCCAAGTGTCAGCATTTAATTAGTGTCCAGAAAAA  650

seq1  TATTTATTTAGGATGAATGAATGAATGAATGAATGAATACATTTAGTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTAGGATGAATGAATGAATGAATGAATGAATACATTTAGTCAA  700

seq1  TCCTCACAGTTTTGGGTTTTCGGGGACACGGGACCTGGTTTCAACTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGTTTTGGGTTTTCGGGGACACGGGACCTGGTTTCAACTCCTA  750

seq1  AGATGCTGAGTGATGTTTGCAGATATTGTGGGTGGAGAAAAATATGTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGAGTGATGTTTGCAGATATTGTGGGTGGAGAAAAATATGTGGG  800

seq1  CATTGCCGTGAGACAAATATCCCTCAGGAACCTGGCTCTGTGTGGGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCGTGAGACAAATATCCCTCAGGAACCTGGCTCTGTGTGGGTGTG  850

seq1  GGCAAAGGGCACAGCTAGGCTGGGGCCCTGTTCCCTTGTGAGTATATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGGGCACAGCTAGGCTGGGGCCCTGTTCCCTTGTGAGTATATTGA  900

seq1  GGGTATTAATGTCTGCTCATGAGGCTGTCCAGCATAGAACAGGCATGGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTAATGTCTGCTCATGAGGCTGTCCAGCATAGAACAGGCATGGCG  950

seq1  TATGATCATTCATGATTAGGAACAATCCG-AGAAGCACACAGATCAAGAA  999
      |||||||||||||||||||| || ||||| ||||||||||||||||||||
seq2  TATGATCATTCATGATTAGG-ACCATCCGAAGAAGCACACAGATCAAGAA  999

seq1  AACAAAGGACTAAGGCTGAGCCTTCATGTCAAGTGACTT--CTGTCTGAG  1047
      ||| ||||||| |||||||||||||||||||  ||||||   ||||||| 
seq2  AAC-AAGGACT-AGGCTGAGCCTTCATGTCAGTTGACTTTCTTGTCTGAA  1047

seq1  CGAACAAGACACCTAAATCAATCCTGTGACATCCTCTGAGG-CTCCCTTT  1096
      ||||||  |||| |||||| ||| ||||||||||||||||| ||||||||
seq2  CGAACAGAACACTTAAATCTATCTTGTGACATCCTCTGAGGCCTCCCTTT  1097

seq1  TCTAAGTTCTGCCAAGCTTGCT-CCCAGTCCAGACAT  1132
      |   ||||||||| |||||| | ||||| ||||||||
seq2  TTAGAGTTCTGCC-AGCTTGGTCCCCAGACCAGACAT  1133