BAC Information

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BAC

Clone NameB6Ng01-336A06
Chromosome16 (Build37)
Map Location 34,068,476 - 34,231,028
singlet/doubletdoublet
Overlap geneKalrn
Upstream geneLmln, LOC638791, Osbpl11, Snx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, LOC100043670
Downstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336A06.bB6Ng01-336A06.g
ACCGA121069GA121070
length1,2241,087
definitionB6Ng01-336A06.b B6Ng01-336A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,229,786 - 34,231,028)(34,068,476 - 34,069,564)
sequence
gaattctgaagttagacatcgagagagccaagcatttattttgtggttgg
agtcacagaagtaaccaggccttgagagaggttgtgtacagtaacaatcc
agagtcagttgacttgagaacaacttcttggctttctgggggttatgagc
aggagaacagtcatctgccagccatttctccagcctccaagagaactgga
tccaggctgctcagcttgagggcatcatcatctgtgggtagccattgtct
attcctggtgtgggcttacacgagcctctttgacctgaagaaataaaagg
cctatatttttagctttcccgctaactgaagacaatctaagctgaattct
tggcttggcactttagtccccaaacagtaatattctttcttccaatctct
ggtttctacatattcagtttctttctgaatacacacggttctccaaggtt
agagggacaatctctggattttatcagggggtaaagtgttaaagcagaaa
atgacctttaaggctacctgtctccatcaaagtcccagcccctttctcct
tgctatgataaaataccctgacaaagacaagagaggctttccttgggctt
ccagagagatacagtgtatcatggcgggaagaaacagcagcaggcagaaa
aggcaagtttgccaggtgcctcgacactcaggagcaaaacaaagggtggc
tcactgtttaaagcattgaggcctgcccggtaaccactccctcccaaaga
atgtggcaggaaccttcttgggactaagtgttcatatacatgagcctatg
gaagacacttttactttcaaatcatagcactaacccattagggaaattgt
tactgcagttgattagagcgaaatgctactattatgatttgaaaagtgct
tttacattaaggattttatttttattctaactcttttgttcagcaaagga
agtagacattttacaggtgagaaagctgacctttgattaaatgtttctaa
agtcacagtttgatatatagaaccagtatttcctcattttaggtacatat
ttcccccactacctagcatctgggtgctcaagggtatactacacatttga
tgacagagatgaaagaacctcataatagaacgaattgcacaggactctct
catgactgaggccaggatgagatagaacttgaaaaactggtggcacaatc
aaagtggggtgttccattttaata
gaattcatcccttcattgaagacaagagtggaaatatataatacaagctg
taattacactaaaagctagaactagattttttaaaaaattaatactttgt
aatgagcttataaaatagtgggctttcttaggatacttttatacacgtgt
attgcccacatctgcccttgctctcctttccaaccccacatccatatttt
gttaaaattttgcaagttttgcttcaagatgttactcatattcaagtctt
ccacctccggggaagtttctgaaagctagcttgtacaaccaaaccacaag
cctcttctgcagatctcagactgtctttgaaaattgggttagctgggcca
tggtggctcacgccttcagccctagtgctgggaagcagaagcagacggat
ctctctgtgtctgaggccagcctgggctacagagtgagtcctaggacggc
caaggctacacagagaaaccctgtcttggaaagaaagaaagagagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagagaga
gagagagagagagagagagagaaagagagagagagagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagagaggaagagaggaagagagaaa
gagaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
aaggaaggaaaagaaaaacaatgttggcacttttgtggagcgacatgaag
cgtgaagttctggctagatcagttagctactcatgttactaagagacctg
gaagatccccatgacaagggagcagtgcttactcttgggtctaggagcaa
gagtggactcagtgaaaaagcccacaggctgatcatcggatgggagcatt
caaagattaccgcaggtagcgcttggatcatctgctgtctccaggtggat
ttaaacattaaggcaagagaaattgcaaggacatagagagacagacgggc
aagggcctcagagctccgagcttgaggcagaacaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_34229786_34231028
seq2: B6Ng01-336A06.b_45_1268 (reverse)

seq1  TATTTAAAT-GAACA--CCATTTTGA-TGTCGCACCAGTTTCTCAGGTTC  46
      |||| |||| |||||  ||| ||||| |||  ||||||||| ||| ||||
seq2  TATTAAAATGGAACACCCCACTTTGATTGTGCCACCAGTTTTTCAAGTTC  50

seq1  CTATCTCTCATCCTTTGTCCTCAGATCA-CTGAGAGTCCTGTTGGCATAT  95
         | ||||||||  || |||||| |||   |||||||||||  |||  |
seq2  ---TATCTCATCC--TGGCCTCAG-TCATGAGAGAGTCCTGT--GCAATT  92

seq1  CTGTCTATTATGAGGTTCTTTCAATTCTTCTGGTTCATCAAATGTGTTAG  145
      |  ||||||||||||||||||||  || ||||  |||||||||||| |||
seq2  CGTTCTATTATGAGGTTCTTTCA--TC-TCTG--TCATCAAATGTG-TAG  136

seq1  TTATTACCCCTTGAGCACCCAAGGATGCTAGGTAGTGGGGGGAAATATTG  195
       |||   ||||||||||||||  ||||||||||||| |||||||||| ||
seq2  -TAT--ACCCTTGAGCACCCA--GATGCTAGGTAGT-GGGGGAAATA-TG  179

seq1  TAACTAAAATGAGGAAATACTGGTTCTATTAATATCAAACTGTGACTTTA  245
      || ||||||||||||||||||||||||||  |||||||||||||||||||
seq2  TACCTAAAATGAGGAAATACTGGTTCTAT--ATATCAAACTGTGACTTTA  227

seq1  GAAACATTTAATCAAAGGTCAGCTTTCTCACCTGTAAAATGTCTACTTTC  295
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAAACATTTAATCAAAGGTCAGCTTTCTCACCTGTAAAATGTCTAC-TTC  276

seq1  CTTTGCTGAACAAAAGAGTTAGAATAAAAATAAAATCCTTAATGTAAAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGAACAAAAGAGTTAGAATAAAAATAAAATCCTTAATGTAAAAG  326

seq1  CACTTTTCAAATCATAATAGTAGCATTTCGCTCTAATCAACTGCAGTAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCAAATCATAATAGTAGCATTTCGCTCTAATCAACTGCAGTAAC  376

seq1  AATTTCCCTAATGGGTTAGTGCTATGATTTGAAAGTAAAAGTGTCTTCCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCTAATGGGTTAGTGCTATGATTTGAAAGTAAAAGTGTCTTCCA  426

seq1  TAGGCTCATGTATATGAACACTTAGTCCCAAGAAGGTTCCTGCCACATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCATGTATATGAACACTTAGTCCCAAGAAGGTTCCTGCCACATTC  476

seq1  TTTGGGAGGGAGTGGTTACCGGGCAGGCCTCAATGCTTTAAACAGTGAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGGGAGTGGTTACCGGGCAGGCCTCAATGCTTTAAACAGTGAGC  526

seq1  CACCCTTTGTTTTGCTCCTGAGTGTCGAGGCACCTGGCAAACTTGCCTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTGTTTTGCTCCTGAGTGTCGAGGCACCTGGCAAACTTGCCTTT  576

seq1  TCTGCCTGCTGCTGTTTCTTCCCGCCATGATACACTGTATCTCTCTGGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCTGCTGTTTCTTCCCGCCATGATACACTGTATCTCTCTGGAA  626

seq1  GCCCAAGGAAAGCCTCTCTTGTCTTTGTCAGGGTATTTTATCATAGCAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGAAAGCCTCTCTTGTCTTTGTCAGGGTATTTTATCATAGCAAG  676

seq1  GAGAAAGGGGCTGGGACTTTGATGGAGACAGGTAGCCTTAAAGGTCATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGGCTGGGACTTTGATGGAGACAGGTAGCCTTAAAGGTCATTT  726

seq1  TCTGCTTTAACACTTTACCCCCTGATAAAATCCAGAGATTGTCCCTCTAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTAACACTTTACCCCCTGATAAAATCCAGAGATTGTCCCTCTAA  776

seq1  CCTTGGAGAACCGTGTGTATTCAGAAAGAAACTGAATATGTAGAAACCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGAACCGTGTGTATTCAGAAAGAAACTGAATATGTAGAAACCAG  826

seq1  AGATTGGAAGAAAGAATATTACTGTTTGGGGACTAAAGTGCCAAGCCAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGAAGAAAGAATATTACTGTTTGGGGACTAAAGTGCCAAGCCAAG  876

seq1  AATTCAGCTTAGATTGTCTTCAGTTAGCGGGAAAGCTAAAAATATAGGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCTTAGATTGTCTTCAGTTAGCGGGAAAGCTAAAAATATAGGCC  926

seq1  TTTTATTTCTTCAGGTCAAAGAGGCTCGTGTAAGCCCACACCAGGAATAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTTCAGGTCAAAGAGGCTCGTGTAAGCCCACACCAGGAATAG  976

seq1  ACAATGGCTACCCACAGATGATGATGCCCTCAAGCTGAGCAGCCTGGATC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCTACCCACAGATGATGATGCCCTCAAGCTGAGCAGCCTGGATC  1026

seq1  CAGTTCTCTTGGAGGCTGGAGAAATGGCTGGCAGATGACTGTTCTCCTGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTCTTGGAGGCTGGAGAAATGGCTGGCAGATGACTGTTCTCCTGC  1076

seq1  TCATAACCCCCAGAAAGCCAAGAAGTTGTTCTCAAGTCAACTGACTCTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACCCCCAGAAAGCCAAGAAGTTGTTCTCAAGTCAACTGACTCTGG  1126

seq1  ATTGTTACTGTACACAACCTCTCTCAAGGCCTGGTTACTTCTGTGACTCC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACTGTACACAACCTCTCTCAAGGCCTGGTTACTTCTGTGACTCC  1176

seq1  AACCACAAAATAAATGCTTGGCTCTCTCGATGTCTAACTTCAGAATTC  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAAATAAATGCTTGGCTCTCTCGATGTCTAACTTCAGAATTC  1224

seq1: chr16_34068476_34069564
seq2: B6Ng01-336A06.g_64_1150

seq1  GAATTCATCCCTTCATTGAAGACAAGAGTGGAAATATATAATACAAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCTTCATTGAAGACAAGAGTGGAAATATATAATACAAGCTG  50

seq1  TAATTACACTAAAAGCTAGAACTAGATTTTTTAAAAAATTAATACTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACACTAAAAGCTAGAACTAGATTTTTTAAAAAATTAATACTTTGT  100

seq1  AATGAGCTTATAAAATAGTGGGCTTTCTTAGGATACTTTTATACACGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTTATAAAATAGTGGGCTTTCTTAGGATACTTTTATACACGTGT  150

seq1  ATTGCCCACATCTGCCCTTGCTCTCCTTTCCAACCCCACATCCATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCACATCTGCCCTTGCTCTCCTTTCCAACCCCACATCCATATTTT  200

seq1  GTTAAAATTTTGCAAGTTTTGCTTCAAGATGTTACTCATATTCAAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAATTTTGCAAGTTTTGCTTCAAGATGTTACTCATATTCAAGTCTT  250

seq1  CCACCTCCGGGGAAGTTTCTGAAAGCTAGCTTGTACAACCAAACCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCGGGGAAGTTTCTGAAAGCTAGCTTGTACAACCAAACCACAAG  300

seq1  CCTCTTCTGCAGATCTCAGACTGTCTTTGAAAATTGGGTTAGCTGGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGCAGATCTCAGACTGTCTTTGAAAATTGGGTTAGCTGGGCCA  350

seq1  TGGTGGCTCACGCCTTCAGCCCTAGTGCTGGGAAGCAGAAGCAGACGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACGCCTTCAGCCCTAGTGCTGGGAAGCAGAAGCAGACGGAT  400

seq1  CTCTCTGTGTCTGAGGCCAGCCTGGGCTACAGAGTGAGTCCTAGGACGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGTCTGAGGCCAGCCTGGGCTACAGAGTGAGTCCTAGGACGGC  450

seq1  CAAGGCTACACAGAGAAACCCTGTCTTGGAAAGAAAGAAAGAGAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTACACAGAGAAACCCTGTCTTGGAAAGAAAGAAAGAGAGAAAGA  500

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAA  550

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGA  600

seq1  GAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAAAGAAAGAAAGA  650
      |||||||||||||||||||||||||||||||||||    |||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAG----AGAAAGAAAGA  646

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGGAAGAGAGGAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGGAAGAGAGGAAGAGA  696

seq1  GAAAGAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  746

seq1  AAGGAAGGAAGGAAAAG-AAAACAATGTTGGCACTTTTGTGGAGCGACAT  799
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAAAGAAAAACAATGTTGGCACTTTTGTGGAGCGACAT  796

seq1  GAAGCGTGAAGTTCTGGCTAGATCAGTTAGCTACTCCTGTTACTAAGAGA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAAGCGTGAAGTTCTGGCTAGATCAGTTAGCTACTCATGTTACTAAGAGA  846

seq1  CCTGGAAGATCCCCATGAC-AGGGAGCAGTGCTTACTCTTGGGTCTA-GA  897
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  CCTGGAAGATCCCCATGACAAGGGAGCAGTGCTTACTCTTGGGTCTAGGA  896

seq1  GC-AGAATGGACTCAGTGAAAAAG-CCACAGGCTGAACATCGGAT-GGAG  944
      || ||| ||||||||||||||||| ||||||||||| |||||||| ||||
seq2  GCAAGAGTGGACTCAGTGAAAAAGCCCACAGGCTGATCATCGGATGGGAG  946

seq1  CATTCAAAGA-TACCGCAGGTAGCGC-TGGATCATCT-CTGTTCTCCCAG  991
      |||||||||| ||||||||||||||| |||||||||| ||| ||| ||||
seq2  CATTCAAAGATTACCGCAGGTAGCGCTTGGATCATCTGCTG-TCT-CCAG  994

seq1  GTTGGATTTAAACATTAAAGGCAGGAGAAATGGCAAGGACACAGGAGAGG  1041
      | |||||||||||||| |||||| ||||||| ||||||||| | |||| |
seq2  G-TGGATTTAAACATT-AAGGCAAGAGAAATTGCAAGGACATA-GAGA-G  1040

seq1  ACAGACGGGCAAGGGCCTCAGAGGCTCCGAGCTTGAGGGCAG-ACAACA  1089
      |||||||||||||||||||||| ||||||||||||| ||||| ||||||
seq2  ACAGACGGGCAAGGGCCTCAGA-GCTCCGAGCTTGA-GGCAGAACAACA  1087