BAC Information

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BAC

Clone NameB6Ng01-336C20
Chromosome16 (Build37)
Map Location 62,060,817 - 62,062,025
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336C20.bB6Ng01-336C20.g
ACCGA121177GA121178
length1,2181,194
definitionB6Ng01-336C20.b B6Ng01-336C20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatcagttttgtgctctcattttagaagcattgcgaatttttca
caaataaaaaatagatcaagcataaaatataatcaagaaatgggtcattt
gatccctctagctagttacattaagaacaacaatctgaacacagttctaa
ggtgttaagaatggtctataatacctgccattgataagtatttttatttc
acatataatttagaaattttggctaagtagctgatatgagaacttgtaaa
tctttctttaattgttttccaattttcatgtgttacatgttaataaatca
tacaatcagagtttcatacaactgaacactggtttctgaaacaaaatgta
tcagtttcacttagcatggtggttcatgcctgaggtaggacgactggaag
atggctgggatggcctaaagtagagagcttgtatcagatcagactgggtg
ataaagcaagtcatttcatcaataaagaaaacaatcatgtttagaaagta
agggttgactttattcatgtgtcttctgtcactcattcaatagcacagca
cgtgtttaacacatagggactctgatcaccacaggtcatgctgattacta
aatgaaagcattactgagaacttaaattgatggaccgcatggtctgcatc
aggacctctgtgtataaattatgacttctagcttcgtgttttatgacatt
cctggttatgtgaacgtgttggtctttgaatcatctattttctcctgggc
tctttcttattggcttgtcttgtctaacctcaatgtgatagttttttgtt
ttaccttattaaatattatttttgtcataatttttaaaacgtagatgaat
attcttcaatagagtgtcgctggttatgtcaatatattgagagagttgta
tgcaatgattaacaaatgggattttgatattttagttgcattaatataaa
tttaaatgacatagtcacatgtggccagtagtgacatactgtcacccagg
aatgctaatttgacatttatatatgtttttatcttactatggaatcccag
tggtttgtatcttatgggcttcacctttgactagtcagaagatactaaaa
cacatcagctttttgtcatcactttggaaactttagtgtcaatctaatgt
taagtatgctcagctagtgtggtagacaccttagaccttaatttcctttg
tgggtggagagattaaaa

gaattccagtagaggaatagagacatcaacctttccacaaaatctttgat
caaaaatttttcctgcctataagaagttcaatgataaagatggaacaggg
gggcacaagtcccttccgctctactcgagactcgagccccgggctacctt
gccagcagagtcttgcccaacacccgcaagggcccacacgggactcccca
cgggaccctaagacctctggtgagtggaccacagtgcctgcaccaatcca
atcgcgcggaacttgagactgcggtacatagggaagcaggctacccgggc
ctgactggggcacaagtcccttccgctcgactcgagactcgagccccggg
ctaccttgacagcagagtcttgcccaacacccgcaagggcccacacggga
ctccccatgggaccctaagacctctggtgagtggaacacagcgcctaccc
caatccaatcgcgtggaacttgagactgtggtacatagggaagcaggcta
cccgggcttgatctggggcacaaaccccttccactccactcgagccccgg
ctaccttgccagctgagtcgcctgacacccgcaagggcccacacaggatt
ccacacgtgatcctaagacctctagtgagtggaacacaacttctgccagg
agtctggttcgaacaccagatatctgggtacctgccttgcaagaagagag
cttgcctgcagagaatactctgcccactgaaactaaggagagtgctaccc
tccaggtctgctcatagaggctaacagagtcacctgaagaacaagctctt
aacagtgacaactaaaacagctagcttcagagattaccagatggcgaaag
gcaaacgtaagaatcctactaacagaaatcaagaccactcaccatcatca
gaacgcagcactcccaccccacctagtcctgggcaccccaacacaaccga
aaatctagacccagatttaaaacatttctcatgatgatgatagaggacat
caagaaggacttcatagtcacttaaagattacaggagagcactgctaaga
gtacaggctcttaaagaaagcaggaaaaccagcaacaggtgatgaaatga
acaaatcatactagactaaagggagttgacaatagatcctaagcgagcac
gcctgaaattgaaaccttagaaagaagaatctgtgggaaacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62060817_62062025
seq2: B6Ng01-336C20.b_48_1265

seq1  GAATTCAATCAGTTTTGTGCTCTCATTTTAGAAGCATTGCGAATTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCAGTTTTGTGCTCTCATTTTAGAAGCATTGCGAATTTTTCA  50

seq1  CAAATAAAAAATAGATCAAGCATAAAATATAATCAAGAAATGGGTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAAATAGATCAAGCATAAAATATAATCAAGAAATGGGTCATTT  100

seq1  GATCCCTCTAGCTAGTTACATTAAGAACAACAATCTGAACACAGTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTCTAGCTAGTTACATTAAGAACAACAATCTGAACACAGTTCTAA  150

seq1  GGTGTTAAGAATGGTCTATAATACCTGCCATTGATAAGTATTTTTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTAAGAATGGTCTATAATACCTGCCATTGATAAGTATTTTTATTTC  200

seq1  ACATATAATTTAGAAATTTTGGCTAAGTAGCTGATATGAGAACTTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATTTAGAAATTTTGGCTAAGTAGCTGATATGAGAACTTGTAAA  250

seq1  TCTTTCTTTAATTGTTTTCCAATTTTCATGTGTTACATGTTAATAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTAATTGTTTTCCAATTTTCATGTGTTACATGTTAATAAATCA  300

seq1  TACAATCAGAGTTTCATACAACTGAACACTGGTTTCTGAAACAAAATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCAGAGTTTCATACAACTGAACACTGGTTTCTGAAACAAAATGTA  350

seq1  TCAGTTTCACTTAGCATGGTGGTTCATGCCTGAGGTAGGACGACTGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCACTTAGCATGGTGGTTCATGCCTGAGGTAGGACGACTGGAAG  400

seq1  ATGGCTGGGATGGCCTAAAGTAGAGAGCTTGTATCAGATCAGACTGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGATGGCCTAAAGTAGAGAGCTTGTATCAGATCAGACTGGGTG  450

seq1  ATAAAGCAAGTCATTTCATCAATAAAGAAAACAATCATGTTTAGAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAAGTCATTTCATCAATAAAGAAAACAATCATGTTTAGAAAGTA  500

seq1  AGGGTTGACTTTATTCATGTGTCTTCTGTCACTCATTCAATAGCACAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGACTTTATTCATGTGTCTTCTGTCACTCATTCAATAGCACAGCA  550

seq1  CGTGTTTAACACATAGGGACTCTGATCACCACAGGTCATGCTGATTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTAACACATAGGGACTCTGATCACCACAGGTCATGCTGATTACTA  600

seq1  AATGAAAGCATTACTGAGAACTTAAATTGATGGACCGCATGGTCTGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGCATTACTGAGAACTTAAATTGATGGACCGCATGGTCTGCATC  650

seq1  AGGACCTCTGTGTATAAATTATGACTTCTAGCTTCGTGTTTTATGACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTCTGTGTATAAATTATGACTTCTAGCTTCGTGTTTTATGACATT  700

seq1  CCTGGTTATGTGAACGTGTTGGTCTTTGAATCATCTATTTTCTCCTGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTATGTGAACGTGTTGGTCTTTGAATCATCTATTTTCTCCTGGGC  750

seq1  TCTTTCTTATTGGCTTGTCTTGTCTAACCTCAATGTGATAGTTTTTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTATTGGCTTGTCTTGTCTAACCTCAATGTGATAGTTTTTTGTT  800

seq1  TTACCTTATTAAATATTATTTTTGTCATAATTTTTAAAACGTAGATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTATTAAATATTATTTTTGTCATAATTTTTAAAACGTAGATGAAT  850

seq1  ATTCTTCAATAGAGTGTCGCTGGTTATGTCAATATATTGAGAGAGTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAATAGAGTGTCGCTGGTTATGTCAATATATTGAGAGAGTTGTA  900

seq1  TGCAATGATTAACAAATGGGATTTTGATATTTTAGTTGCATTAATATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGATTAACAAATGGGATTTTGATATTTTAGTTGCATTAATATAAA  950

seq1  TTTAAATGACATAGTCACATGTGGCCAGTAGTGACATACTGTCACCCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGACATAGTCACATGTGGCCAGTAGTGACATACTGTCACCCAGG  1000

seq1  AATGCTAATTTGACATTTATATATGTTTTTATCTTACTATGGAATCCCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAATTTGACATTTATATATGTTTTTATCTTACTATGGAATCCCAG  1050

seq1  TGGTTTGTATC-TAT-GGCTTCACCTTTGACTAGTCAG-AGATACTAAAA  1097
      ||||||||||| ||| |||||||||||||||||||||| |||||||||||
seq2  TGGTTTGTATCTTATGGGCTTCACCTTTGACTAGTCAGAAGATACTAAAA  1100

seq1  CACATCAGCTTTTTGTCATCACTTTGAAAACTTTAGTTGTCAATCT-ATG  1146
      |||||||||||||||||||||||||| ||||||||| ||||||||| |||
seq2  CACATCAGCTTTTTGTCATCACTTTGGAAACTTTAG-TGTCAATCTAATG  1149

seq1  TTTAGTAATTGCTTCAGCTAATGT-GTAG--ACCTTAGACCTTAATTTCT  1193
      || ||||  ||| ||||||| ||| ||||  |||||||||||||||||| 
seq2  TTAAGTA--TGC-TCAGCTAGTGTGGTAGACACCTTAGACCTTAATTTCC  1196

seq1  TTT---GGTGGAGA---TAAAA  1209
      |||   ||||||||   |||||
seq2  TTTGTGGGTGGAGAGATTAAAA  1218


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