BAC Information

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BAC

Clone NameB6Ng01-336H01
Chromosome16 (Build37)
Map Location 95,239,295 - 95,391,869
singlet/doubletdoublet
Overlap geneLOC666201
Upstream geneSim2, Hlcs, LOC622832, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3, Dscr3, Dyrk1a, Kcnj6
Downstream geneKcnj15, Erg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H01.bB6Ng01-336H01.g
ACCGA121361GA121362
length1,120957
definitionB6Ng01-336H01.b B6Ng01-336H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,390,765 - 95,391,869)(95,239,295 - 95,240,253)
sequence
gaattcttttccttccctgtctaagtgggtttctctggacactatagttg
gttcctatttgcttttctcaataaagggagatgttatacttagcaatgga
gccctccacaaccttaggccccacagaccatcagcatccagatgtgcctc
actacgcttcaaactccttaacttctatgtggatatataaaaagtcagct
gtccaaggacacactaggctgttacatgagatggagggtagcccaggatc
catgagaccttgtctcaaaaactaacaaaatttttttttaaaaaatggct
tggtagcttatgcctataattgtaccactcagaaagcagaggccgttgtg
tggtctattgtgagtctgagttcaaggtcagcctaggctacagataaaga
ggccctatctcaaaaaacaaaaatgaaaagaaagaaaagaatgaagtacc
cacatagacacatacacacaaacacacacatgcacacagatgcacatgca
cgtacattttacctgaccgctgagaagctgtgtgctcaaagatacaacac
acatgtctgtcactatttatcccatctcctcctgaccttgtggatcacag
ctccagacagactgtgatggaccaaagccttccagatacacagggaccct
cagcccagtcatgctgagatctggcattcctatacctttactccagacag
gttgtcaggaagacacttgagccacacagagatgctgctggtaccacacc
tggcctccatttccagcaaggagtaccaaggtcatgactacagatttacc
atctggtgaatctggcaaagaaagcttcctgtgactccaggtgactagaa
actgagccagaagaaccacataccatattcctggtttggctctaagctca
gaactcagcatcatcaacgggagctgaaagaaatggaaaccctctgtccc
ttccccgtacaaggacagaaaccaatccttcctatagagaacaagctatc
tgagttcactgtccaggttcttcctggtctgtgatcagttctggcaacac
aaacataaattatgggtctcaccagtgggaactctgggacacagtaatta
aggaaaatttataccaagac
gaattcttttctttctaaagatttatttcttttatgtatgtgagtacagt
gtcactgtcctcagacacaccagaagaaggcatcagatcccattatagat
ggttgtgagccatcatgtggttgctgggaattgaattcaggacctctggt
ctgggagagcagaccttaaccactgaaccatctctccagccatcattata
gaattctaagaggctacggttgcactttctagggcccaacccccaatgtg
aaaacacatagccttggtacgtctctgtacactcccaggctcacactttg
tgtgtttattacagactccttgctgactcctgccttacagaatgcaaaca
gacttgactagacttcgtcttgcagcgaatggaaactcaagggcttaaga
aaacacctgctaatgctggggggaaaaatggctgatttagaatacaaatg
gcatttatttcatgtgctgtactataccaccacgatccacgaggaaacct
ttaaattatgtttattgtctttttttttttcttagagagaaacaaaccgc
gcagcatatttggatagtttttcattacaatagttggttgtgcagatcca
ttttaatactgaagagaagatcgattaccagtaataacttgcatgtctca
aagtggccgatcaagctgggtggccatgctacttcggcagattctgcccc
tcctaatgtggcccgtgttttccctcacatctgccaacactccatcgatt
ctggggaaccttttttttggtaagtagtgggtgttttagggtgttctgag
gatcatgtgggctttgacaggaaagggctcatagatagcgactgcttctc
cctatgtggttcgtaccaaaggaaagcctttgctaggaaacagaagggag
tgtggtgattgaacataccaaacaggggtggtactgagcaagtctaccag
catcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_95390765_95391869
seq2: B6Ng01-336H01.b_43_1162 (reverse)

seq1  GTCTTTGTATAAATTTTCC-TAATTACTGTGT-CCAGAGT--CCACTGGT  46
      ||||| ||||||||||||| |||||||||||| |||||||  ||||||||
seq2  GTCTTGGTATAAATTTTCCTTAATTACTGTGTCCCAGAGTTCCCACTGGT  50

seq1  GAGACCCATAATTTATGTTTGTG-TGCCAG-ACTGATCACAGAC-----A  89
      ||||||||||||||||||||||| |||||| |||||||||||||     |
seq2  GAGACCCATAATTTATGTTTGTGTTGCCAGAACTGATCACAGACCAGGAA  100

seq1  GAGACCTGGACAGTGAACTCAGATAGCTTG-TCTCTATAGGAAGGAT--G  136
      || ||||||||||||||||||||||||||| ||||||||||||||||  |
seq2  GA-ACCTGGACAGTGAACTCAGATAGCTTGTTCTCTATAGGAAGGATTGG  149

seq1  GTTCTGTCCTTGTACGGGG-AGGGACAGAGGGTTTCCATTTCTTTCAGCT  185
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTCTGTCCTTGTACGGGGAAGGGACAGAGGGTTTCCATTTCTTTCAGCT  199

seq1  -CCGTTGATGATGCTGAGTTCTGAGCTTAGAGCCAAACCAGGAATATGGT  234
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGATGATGCTGAGTTCTGAGCTTAGAGCCAAACCAGGAATATGGT  249

seq1  ATGTGGTTCTTCTGGCTCAGTTTCTAGTCACCTGGAGTCACAGGAAGCTT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTTCTTCTGGCTCAGTTTCTAGTCACCTGGAGTCACAGGAAGCTT  299

seq1  TCTTTGCCAGATTCACCAGATGGTAAATCTGTAGTCATGACCTTGGTACT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCAGATTCACCAGATGGTAAATCTGTAGTCATGACCTTGGTACT  349

seq1  CCTTGCTGGAAATGGAGGCCAGGTGTGGTACCAGCAGCATCTCTGTGTGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGAAATGGAGGCCAGGTGTGGTACCAGCAGCATCTCTGTGTGG  399

seq1  CTCAAGTGTCTTCCTGACAACCTGTCTGGAGTAAAGGTATAGGAATGCCA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGTCTTCCTGACAACCTGTCTGGAGTAAAGGTATAGGAATGCCA  449

seq1  GATCTCAGCATGACTGGGCTGAGGGTCCCTGTGTATCTGGAAGGCTTTGG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCATGACTGGGCTGAGGGTCCCTGTGTATCTGGAAGGCTTTGG  499

seq1  TCCATCACAGTCTGTCTGGAGCTGTGATCCACAAGGTCAGGAGGAGATGG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACAGTCTGTCTGGAGCTGTGATCCACAAGGTCAGGAGGAGATGG  549

seq1  GATAAATAGTGACAGACATGTGTGTTGTATCTTTGAGCACACAGCTTCTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAGTGACAGACATGTGTGTTGTATCTTTGAGCACACAGCTTCTC  599

seq1  AGCGGTCAGGTAAAATGTACGTGCATGTGCATCTGTGTGCATGTGTGTGT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTCAGGTAAAATGTACGTGCATGTGCATCTGTGTGCATGTGTGTGT  649

seq1  TTGTGTGTATGTGTCTATGTGGGTACTTCATTCTTTTCTTTCTTTTCATT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTATGTGTCTATGTGGGTACTTCATTCTTTTCTTTCTTTTCATT  699

seq1  TTTGTTTTTTGAGATAGGGCCTCTTTATCTGTAGCCTAGGCTGACCTTGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTGAGATAGGGCCTCTTTATCTGTAGCCTAGGCTGACCTTGA  749

seq1  ACTCAGACTCACAATAGACCACACAACGGCCTCTGCTTTCTGAGTGGTAC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACTCACAATAGACCACACAACGGCCTCTGCTTTCTGAGTGGTAC  799

seq1  AATTATAGGCATAAGCTACCAAGCCATTTTTTAAAAAAAAATTTTGTTAG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGGCATAAGCTACCAAGCCATTTTTTAAAAAAAAATTTTGTTAG  849

seq1  TTTTTGAGACAAGGTCTCATGGATCCTGGGCTACCCTCCATCTCATGTAA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAAGGTCTCATGGATCCTGGGCTACCCTCCATCTCATGTAA  899

seq1  CAGCCTAGTGTGTCCTTGGACAGCTGACTTTTTATATATCCACATAGAAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGTGTGTCCTTGGACAGCTGACTTTTTATATATCCACATAGAAG  949

seq1  TTAAGGAGTTTGAAGCGTAGTGAGGCACATCTGGATGCTGATGGTCTGTG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGTTTGAAGCGTAGTGAGGCACATCTGGATGCTGATGGTCTGTG  999

seq1  GGGCCTAAGGTTGTGGAGGGCTCCATTGCTAAGTATAACATCTCCCTTTA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAAGGTTGTGGAGGGCTCCATTGCTAAGTATAACATCTCCCTTTA  1049

seq1  TTGAGAAAAGCAAATAGGAACCAACTATAGTGTCCAGAGAAACCCACTTA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAAGCAAATAGGAACCAACTATAGTGTCCAGAGAAACCCACTTA  1099

seq1  GACAGGGAAGGAAAAGAATTC  1105
      |||||||||||||||||||||
seq2  GACAGGGAAGGAAAAGAATTC  1120

seq1: chr16_95239295_95240253
seq2: B6Ng01-336H01.g_65_1021

seq1  GAATTCTTTTCTTTCTAAAGATTTATTTCTTTTATGTATGTGAGTACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTTTCTAAAGATTTATTTCTTTTATGTATGTGAGTACAGT  50

seq1  GTCACTGTCCTCAGACACACCAGAAGAAGGCATCAGATCCCATTATAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTCCTCAGACACACCAGAAGAAGGCATCAGATCCCATTATAGAT  100

seq1  GGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTCAGGACCTCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGCCATCATGTGGTTGCTGGGAATTGAATTCAGGACCTCTGGT  150

seq1  CTGGGAGAGCAGACCTTAACCACTGAACCATCTCTCCAGCCATCATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGCAGACCTTAACCACTGAACCATCTCTCCAGCCATCATTATA  200

seq1  GAATTCTAAGAGGCTACGGTTGCACTTTCTAGGGCCCAACCCCCAATGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAGGCTACGGTTGCACTTTCTAGGGCCCAACCCCCAATGTG  250

seq1  AAAACACATAGCCTTGGTACGTCTCTGTACACTCCCAGGCTCACACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACATAGCCTTGGTACGTCTCTGTACACTCCCAGGCTCACACTTTG  300

seq1  TGTGTTTATTACAGACTCCTTGCTGACTCCTGCCTTACAGAATGCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATTACAGACTCCTTGCTGACTCCTGCCTTACAGAATGCAAACA  350

seq1  GACTTGACTAGACTTCGTCTTGCAGCGAATGGAAACTCAAGGGCTTAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGACTAGACTTCGTCTTGCAGCGAATGGAAACTCAAGGGCTTAAGA  400

seq1  AAACACCTGCTAATGCTGGGGGGAAAAATGGCTGATTTAGAATACAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTGCTAATGCTGGGGGGAAAAATGGCTGATTTAGAATACAAATG  450

seq1  GCATTTATTTCATGTGCTGTACTATACCACCACGATCCACGAGGAAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATTTCATGTGCTGTACTATACCACCACGATCCACGAGGAAACCT  500

seq1  TTAAATTATGTTTATTGTCTTTTTTTTTTTCTTAGAGAGAAACAAACCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGTTTATTGTCTTTTTTTTTTTCTTAGAGAGAAACAAACCGC  550

seq1  GCAGCATATTTGGATAGTTTTTCATTACAATAGTTGGTTGTGCAGATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATATTTGGATAGTTTTTCATTACAATAGTTGGTTGTGCAGATCCA  600

seq1  TTTTAATACTGAAGAGAAGATCGATTACCAGTAATAACTTGCATGTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACTGAAGAGAAGATCGATTACCAGTAATAACTTGCATGTCTCA  650

seq1  AAGTGGCCGATCAAGCTGGGTGGCCATGCTACTTCGGCAGATTCTGCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCCGATCAAGCTGGGTGGCCATGCTACTTCGGCAGATTCTGCCCC  700

seq1  TCCTAATGTGGCCCGTGTTTTCCCCTCACATCTGCCAACACTCCATCGAT  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTAATGTGGCCCGTGTTTT-CCCTCACATCTGCCAACACTCCATCGAT  749

seq1  TCTGGGGAACCTTTTTTTTGGTAAGTAGTGGGTGTTTTAGGGTGTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAACCTTTTTTTTGGTAAGTAGTGGGTGTTTTAGGGTGTTCTGA  799

seq1  GGATCATGTGGGCTTTGACAGGAAAGGGCTCATAGATAGCGACTGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGTGGGCTTTGACAGGAAAGGGCTCATAGATAGCGACTGCTTCT  849

seq1  CCCTATGTGGTTCGTACCAAAGGAAGGCCTTTGCTAGGAAAACAGAAGGG  900
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CCCTATGTGGTTCGTACCAAAGGAAAGCCTTTGCTAGG-AAACAGAAGGG  898

seq1  AGTGTGGTGTATTGAACATACCAAACAGGTGTGGTACTGAGC-AGGCCAC  949
      ||||||||| ||||||||||||||||||| |||||||||||| || | ||
seq2  AGTGTGGTG-ATTGAACATACCAAACAGGGGTGGTACTGAGCAAGTCTAC  947

seq1  CAGCATCCTG  959
      ||||||||||
seq2  CAGCATCCTG  957