BAC Information

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BAC

Clone NameB6Ng01-336H16
Chromosome16 (Build37)
Map Location 72,088,509 - 72,207,160
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneRobo1, LOC100039310, LOC100039318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H16.bB6Ng01-336H16.g
ACCGA121387GA121388
length1,2391,121
definitionB6Ng01-336H16.b B6Ng01-336H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,088,509 - 72,089,760)(72,206,025 - 72,207,160)
sequence
gaattccacaggctatcgctctgaaattccacatattggcacctacatgc
tgttgaaattgactaccagcttctgcatggcacagtgccctcatcacaga
tggccaggtgttgcatgacactgagaaattatcatctcactgagctcttt
ggtattattttttttcctttgagtatgaactaaaatttcaaagcaacttg
atccttgtgaggacacacagacattaagcagaatcacatactgttttgga
gatataaatagtcaaagaaagttaattatcaaatctatactttgccagaa
ttaaaaggagagtagaatggagttacccccagggccattcttgtagttac
aaaatataaaggatttaaatcaaacctgatacatatcctatatgctttta
tttcaaaggtttcgaccgcacatcttattttaattgaagccaacagctaa
ctcactgagtttttcaagcagtgaacgaatcaatattcaaatctgtctgg
aggcccaggaagtatgtccactagactttgaatggagaatgttaagcata
gctacaacttcaaagattgacagaacgttgtcataagtcactctttgtct
gaatgactaaaagaaaagtgtcgcagctgtgtcagcacagaagtcaaatt
tgtttatgtgacctttaagagaggcaacagcacaaaaggaaaacactttg
gtgagaaatttggcttcctagctgggcatgctgcgctgatattgtggtgt
tgccagcttcgctgaatggaaacacaagagcaaattaaggcagcttcatg
aactcagagggagagcagttgttctagtggcttccatgaaaatgcctaat
taattttcaaagtaatcaacattgtatgtgtgtgtgtgtgtgcatgtgcg
tgtgcgtgtgtgatctgtgattgagaatctagctgaaaacgtgcccaggg
atgaggtggaaaagagagtttcatgattagcttgcggtgccacagtagtg
ggaccagcacaatttagttattctcctcattatattacattagcagctat
gaaacatttgggtgaattcattttggagtaatacagcatattttattttt
ttctgaccctcaataactatgcatctgtttaaggcttaccattgttattt
ttattctagggaattgagaacatataaaatggacctggattaatcctcat
ggcctaggtaggttgagtctctgggccacatcatttttg

gaattcaaattctctaaataataaaaatcataagagtaatgagtataaag
aatatatccttaaattgtgggtattattcttgagttcatctaactttgta
attatgtggataaaggcactatataatacctttgtgagctgtagaaaaaa
atgaacactaggacttcatcacttttcaatttcctatctgccccttgaag
ggtatagtcactagcaagaagatgaagtaattgaagtcttcaatgatgtc
atcttaattgaatagaatatatattttcttcttattagagcattttaatg
agttgtaggtacttttagagctcagaattatatttaagcatttaaagact
actaagcttattatcttctgtctaatcttcactgcacttccacagtgcga
cacactcaatttagttctgtttatatgtggttggtggaattccatcgaat
gtagaagccatgaagatttttttatggataactgagaattggctgagcta
aggtcaataattaactatctttaaaacaaatgatcataatggaccatttg
ggtaagagcattatcttctaaagtatagaaaaggagaaggctgaagagtg
aatggtacagagatggagcacagaggtcccagtccctctggttttgaggg
tgaaagttaagcactggtcaatgggaagtctgcagaagttggaaaagata
aagcatcgtggacttcacaggaatgcatcctcaagagcactgtggacttc
ttcacagcatcccggtgcaagatacaatgtgtgctggaacggcggcccat
agaactttaaattaatacactaaatctgtgactggtcactaaatttatgc
tcgttttcctgaaataagatatgaaacacacattctattgtttctataca
aacacagttaacgcggcggcaccgaagagtttctgaatgctcctcctaga
gttcaccctgactaattattttcatatccagcagacattactcgttcctc
aggtaatttgaggagggcagacttttgagatattacgtcgcaatatctga
gagaagctgtaatctctgtaactctgttgaagaagttagtgcttttttgt
gcctgtcaagtagaaatctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72088509_72089760
seq2: B6Ng01-336H16.b_44_1282

seq1  GAATTCCACAGGCTATCGCTCTGAAATTCCACATATTGGCACCTACATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGCTATCGCTCTGAAATTCCACATATTGGCACCTACATGC  50

seq1  TGTTGAAATTGACTACCAGCTTCTGCATGGCACAGTGCCCTCATCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAATTGACTACCAGCTTCTGCATGGCACAGTGCCCTCATCACAGA  100

seq1  TGGCCAGGTGTTGCATGACACTGAGAAATTATCATCTCACTGAGCTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGTGTTGCATGACACTGAGAAATTATCATCTCACTGAGCTCTTT  150

seq1  GGTATTATTTTTTTTCCTTTGAGTATGAACTAAAATTTCAAAGCAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATTTTTTTTCCTTTGAGTATGAACTAAAATTTCAAAGCAACTTG  200

seq1  ATCCTTGTGAGGACACACAGACATTAAGCAGAATCACATACTGTTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTGAGGACACACAGACATTAAGCAGAATCACATACTGTTTTGGA  250

seq1  GATATAAATAGTCAAAGAAAGTTAATTATCAAATCTATACTTTGCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAATAGTCAAAGAAAGTTAATTATCAAATCTATACTTTGCCAGAA  300

seq1  TTAAAAGGAGAGTAGAATGGAGTTACCCCCAGGGCCATTCTTGTAGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAGAGTAGAATGGAGTTACCCCCAGGGCCATTCTTGTAGTTAC  350

seq1  AAAATATAAAGGATTTAAATCAAACCTGATACATATCCTATATGCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAAAGGATTTAAATCAAACCTGATACATATCCTATATGCTTTTA  400

seq1  TTTCAAAGGTTTCGACCGCACATCTTATTTTAATTGAAGCCAACAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGTTTCGACCGCACATCTTATTTTAATTGAAGCCAACAGCTAA  450

seq1  CTCACTGAGTTTTTCAAGCAGTGAACGAATCAATATTCAAATCTGTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAGTTTTTCAAGCAGTGAACGAATCAATATTCAAATCTGTCTGG  500

seq1  AGGCCCAGGAAGTATGTCCACTAGACTTTGAATGGAGAATGTTAAGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGGAAGTATGTCCACTAGACTTTGAATGGAGAATGTTAAGCATA  550

seq1  GCTACAACTTCAAAGATTGACAGAACGTTGTCATAAGTCACTCTTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAACTTCAAAGATTGACAGAACGTTGTCATAAGTCACTCTTTGTCT  600

seq1  GAATGACTAAAAGAAAAGTGTCGCAGCTGTGTCAGCACAGAAGTCAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTAAAAGAAAAGTGTCGCAGCTGTGTCAGCACAGAAGTCAAATT  650

seq1  TGTTTATGTGACCTTTAAGAGAGGCAACAGCACAAAAGGAAAACACTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTGACCTTTAAGAGAGGCAACAGCACAAAAGGAAAACACTTTG  700

seq1  GTGAGAAATTTGGCTTCCTAGCTGGGCATGCTGCGCTGATATTGTGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAATTTGGCTTCCTAGCTGGGCATGCTGCGCTGATATTGTGGTGT  750

seq1  TGCCAGCTTCGCTGAATGGAAACACAAGAGCAAATTAAGGCAGCTTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTTCGCTGAATGGAAACACAAGAGCAAATTAAGGCAGCTTCATG  800

seq1  AACTCAGAGGGAGAGCAGTTGTTCTAGTGGCTTCCATGAAAATGCCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAGGGAGAGCAGTTGTTCTAGTGGCTTCCATGAAAATGCCTAAT  850

seq1  TAATTTTCAAAGTAATCAACATTGTATGTGTGTGTGTGTGTGCATGTGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCAAAGTAATCAACATTGTATGTGTGTGTGTGTGTGCATGTGCG  900

seq1  TGTGCGTGTGTGATCTGTGATTGAGAATCTAGCTGAAAACGTGCCCAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTGCGTGTGTGATCTGTGATTGAGAATCTAGCTGAAAACGTGCCCAGGG  950

seq1  ATGAGGTGGAAAAGAAGAGTTTCATGATTAGCTTGCGGTG-CACAGTAGT  999
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  ATGAGGTGGAAAAG-AGAGTTTCATGATTAGCTTGCGGTGCCACAGTAGT  999

seq1  GGGACCAGCACAATTTAGTTATTCTCCTCATTAATATTACATTAGCAAGC  1049
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GGGACCAGCACAATTTAGTTATTCTCCTCATT-ATATTACATTAGC-AGC  1047

seq1  TAATGAAACATTTGGGTGAATTCATTTT-GAGTAATACAGGCATTAATTT  1098
      | |||||||||||||||||||||||||| |||||||||| ||||  ||||
seq2  T-ATGAAACATTTGGGTGAATTCATTTTGGAGTAATACA-GCAT--ATTT  1093

seq1  TATTTTTTTCTGAACACTCAATTATACTAATTGGCATCTG-TTAGGGTTT  1147
      |||||||||||| || ||||||   ||||    ||||||| ||| || ||
seq2  TATTTTTTTCTG-ACCCTCAAT--AACTA---TGCATCTGTTTAAGGCTT  1137

seq1  ACCAT--GTATATTTA-TCTAGGAAAATTGAGAACAAATAAAAAATTGCA  1194
      |||||   ||| |||| ||||||  ||||||||||| ||||||   || |
seq2  ACCATTGTTATTTTTATTCTAGG-GAATTGAGAACATATAAAA---TGGA  1183

seq1  CCCATGATTTTAAATACTACTAG-CTATGTAAGTTTTAGATCT-GGTCAC  1242
      ||  ||  ||  ||| ||  | | ||| ||| |||     ||| || |||
seq2  CC--TGGATT--AATCCTCATGGCCTAGGTAGGTTGAGTCTCTGGGCCAC  1229

seq1  ATCATTTTTG  1252
      ||||||||||
seq2  ATCATTTTTG  1239


seq1: chr16_72206025_72207160
seq2: B6Ng01-336H16.g_65_1185 (reverse)

seq1  TAAGATTTCCTACCTTGGACAAAGCACAAAAAAGCACTTACCTTCTTCCA  50
      |||||||| ||||  | ||| | |||||||||||||| || |||||||  
seq2  TAAGATTT-CTAC--TTGAC-AGGCACAAAAAAGCAC-TAACTTCTTC--  43

seq1  AACAGAGTTACAGAGATTTACAGGCTCTCTCAGATATTGGCGACGGTAAT  100
      |||||||||||||||| ||||||  ||||||||||||| ||||| |||||
seq2  AACAGAGTTACAGAGA-TTACAGCTTCTCTCAGATATT-GCGAC-GTAAT  90

seq1  ATCCTCAAAAGGTCTTGCCCTCCTCAAATTACCTGAGAAACGGAGTAATG  150
      || ||||||| ||| |||||||||||||||||||||| ||| ||||||||
seq2  AT-CTCAAAA-GTC-TGCCCTCCTCAAATTACCTGAGGAAC-GAGTAATG  136

seq1  TCTGCTGGATATTGAAAATAATTAGTCAGGGTGAACTCTAGGAGGAGCAT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGGATA-TGAAAATAATTAGTCAGGGTGAACTCTAGGAGGAGCAT  185

seq1  TCAGAAACTCTTCGGTGCCGCCGCGTTAACTGTGTTTGTATAGAAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACTCTTCGGTGCCGCCGCGTTAACTGTGTTTGTATAGAAACAAT  235

seq1  AGAATGTGTGTTTCATATCTTATTTCAGGAAAACGAGCATAAATTTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGTGTTTCATATCTTATTTCAGGAAAACGAGCATAAATTTAGTG  285

seq1  ACCAGTCACAGATTTAGTGTATTAATTTAAAGTTCTATGGGCCGCCGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCACAGATTTAGTGTATTAATTTAAAGTTCTATGGGCCGCCGTTC  335

seq1  CAGCACACATTGTATCTTGCACCGGGATGCTGTGAAGAAGTCCACAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATTGTATCTTGCACCGGGATGCTGTGAAGAAGTCCACAGTGC  385

seq1  TCTTGAGGATGCATTCCTGTGAAGTCCACGATGCTTTATCTTTTCCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGGATGCATTCCTGTGAAGTCCACGATGCTTTATCTTTTCCAACT  435

seq1  TCTGCAGACTTCCCATTGACCAGTGCTTAACTTTCACCCTCAAAACCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGACTTCCCATTGACCAGTGCTTAACTTTCACCCTCAAAACCAGA  485

seq1  GGGACTGGGACCTCTGTGCTCCATCTCTGTACCATTCACTCTTCAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGGACCTCTGTGCTCCATCTCTGTACCATTCACTCTTCAGCCTT  535

seq1  CTCCTTTTCTATACTTTAGAAGATAATGCTCTTACCCAAATGGTCCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTATACTTTAGAAGATAATGCTCTTACCCAAATGGTCCATTA  585

seq1  TGATCATTTGTTTTAAAGATAGTTAATTATTGACCTTAGCTCAGCCAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTTGTTTTAAAGATAGTTAATTATTGACCTTAGCTCAGCCAATT  635

seq1  CTCAGTTATCCATAAAAAAATCTTCATGGCTTCTACATTCGATGGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTATCCATAAAAAAATCTTCATGGCTTCTACATTCGATGGAATTC  685

seq1  CACCAACCACATATAAACAGAACTAAATTGAGTGTGTCGCACTGTGGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCACATATAAACAGAACTAAATTGAGTGTGTCGCACTGTGGAAG  735

seq1  TGCAGTGAAGATTAGACAGAAGATAATAAGCTTAGTAGTCTTTAAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAAGATTAGACAGAAGATAATAAGCTTAGTAGTCTTTAAATGCT  785

seq1  TAAATATAATTCTGAGCTCTAAAAGTACCTACAACTCATTAAAATGCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAATTCTGAGCTCTAAAAGTACCTACAACTCATTAAAATGCTCT  835

seq1  AATAAGAAGAAAATATATATTCTATTCAATTAAGATGACATCATTGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAGAAAATATATATTCTATTCAATTAAGATGACATCATTGAAGA  885

seq1  CTTCAATTACTTCATCTTCTTGCTAGTGACTATACCCTTCAAGGGGCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTACTTCATCTTCTTGCTAGTGACTATACCCTTCAAGGGGCAGA  935

seq1  TAGGAAATTGAAAAGTGATGAAGTCCTAGTGTTCATTTTTTTCTACAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATTGAAAAGTGATGAAGTCCTAGTGTTCATTTTTTTCTACAGCT  985

seq1  CACAAAGGTATTATATAGTGCCTTTATCCACATAATTACAAAGTTAGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGTATTATATAGTGCCTTTATCCACATAATTACAAAGTTAGATG  1035

seq1  AACTCAAGAATAATACCCACAATTTAAGGATATATTCTTTATACTCATTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGAATAATACCCACAATTTAAGGATATATTCTTTATACTCATTA  1085

seq1  CTCTTATGATTTTTATTATTTAGAGAATTTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGATTTTTATTATTTAGAGAATTTGAATTC  1121


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