BAC Information

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BAC

Clone NameB6Ng01-336H19
Chromosome16 (Build37)
Map Location 85,763,659 - 85,874,737
singlet/doubletdoublet
Overlap geneAdamts1, Adamts5
Upstream geneJam2, Atp5j, LOC100039950, Gabpa, Gm311, App, Cyyr1, LOC100039994, LOC622000
Downstream geneLOC100040025, LOC100039780
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336H19.bB6Ng01-336H19.g
ACCGA121393GA121394
length1,0541,127
definitionB6Ng01-336H19.b B6Ng01-336H19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,763,659 - 85,764,713)(85,873,602 - 85,874,737)
sequence
gaattccagtgctaagtttcagtcttctcattgtgtttgtaatattttaa
tgctgttaacaaagttacagtagtttgagtggaatttgggtgccatatat
atatatatatatatatatatatatatatatatgtattttaatttttatgt
accacattaattctgaaatctaagaaacctatctgaatattgataaaaga
actcaatggttataagaaaataaggaatgaatcttaaagctgtccttttg
gtctgcctttctcttttgttaccttcatagttagcaaaacccacttctga
gtggctttgagtactgtgggaaacttttatcataaactgggatcagttaa
ctcttctgttaccaagatctcaaagctttttatgactatcacttctttga
ctcctttctgaaaatccagacctaaatttattacagtagagttggacctt
aaagtggcagaaaatccaagacccagcctttatttattagtgaatggact
ttagagtttctgttggcaatactgtatagatgatcttttgagattgtttt
cctcctgtatttgtggatccattcttttcttttatatcacaccttttttt
ttttttttttttgtcatgctatgatttatttagtgtttcactgtgcctgg
ttgaaaatgtaatctttatgaatccttggtaaatagatactgtcacagtc
actgtcactactgattaggaaacttaggcttaactattggactgagcaca
ggctccccaatgaaggagctagagaaaggacccaaggagctgaaggggtt
tgcagccccataggaggaacaacaatatgaaccaaccagtacccccagag
ctcccagggactaaaccaccaaccaaagagtacacatggagggactcatg
gctccagccatatatgtagcagagatgaccttgttgggaccatcattggg
aggagaggcccttggtcctgtgaggaagctccatgtcccagtatagggaa
acgccagaatagagaagcaggaatgggtgggttggtgagcaggggggagg
agga

gaattcattagtactgaatgtttcctgatttaggtccaaagagaaatgtg
aagtggttcggatatggctgggaagccaaagtgcacactcttaagtaact
gtatctggagacttgtgattcagaacaggagtcgccatgcctcgtgggac
tcccccacccctggccaagggctttgcagaaatgttgcagtgtttgtaca
agttagctggctgggaaggcaagcctctgaaataagggtaagcatggaca
tagaaatagtgcaaaggaggcaggttattgaatttcctctaccaagggct
tcctaaccttcagtgaggtctagggagatagctttgtttgctgcatctgg
aagtcctctgccagataatgagaaggacccagtgggtaaaactcaagaac
accagcaacctgagctgataagagaaacagacagaaattatcttgttact
tatttaaagaactaagggtacagctactcagcaagcacagaagtttggac
agaaaatactagtggaaagctatatatctggattcactgtcaatttccaa
cagaaggtatacatataaagccagattttaaggtaatatgaagagtcatt
ctagtcacatcttgatatttccataataagtatgctttttgaaaatatga
acaaataacacatactctaaggccacaatgagctatgacttaaagcttag
cctcactcccatattgttaaatacaatggtgagtacacaatgctcccttc
agctcctagaatgactttagtcagcatcctctgttcctctggcagtgtgt
gtgctcctttatcactagacccaaaatggcttctcaaagaatgggagtgc
ttctcactactcatgataaacatccatctaaaagccccaaagaaagccat
aagcgtgaagctagaaacaaaatgggaacagcaaacattgtataaggttc
ggatgcttcttcaggattattattggtgtttccaagctatggatatttag
gtcaatgttcaatctaataacccaagtgctgaaagagacagagaaacagc
tatgctgctaaaaataaaataaggtaaatcataaaaaataggtctatatt
cctactcaccatcagaaaaggaacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_85763659_85764713
seq2: B6Ng01-336H19.b_42_1094

seq1  GAATTCCAGTGCTAAGTTTCAGTCTTCTCATTGTGTTTGTAATATTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGCTAAGTTTCAGTCTTCTCATTGTGTTTGTAATATTTTAA  50

seq1  TGCTGTTAACAAAGTTACAGTAGTTTGAGTGGAATTTGGGTGCCATATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTAACAAAGTTACAGTAGTTTGAGTGGAATTTGGGTGCCATATAT  100

seq1  ATATATATATATATATATATATATATATATATGTATTTTAATTTTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATGTATTTTAATTTTTATGT  150

seq1  ACCACATTAATTCTGAAATCTAAGAAACCTATCTGAATATTGATAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATTAATTCTGAAATCTAAGAAACCTATCTGAATATTGATAAAAGA  200

seq1  ACTCAATGGTTATAAGAAAATAAGGAATGAATCTTAAAGCTGTCCTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGGTTATAAGAAAATAAGGAATGAATCTTAAAGCTGTCCTTTTG  250

seq1  GTCTGCCTTTCTCTTTTGTTACCTTCATAGTTAGCAAAACCCACTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCTTTCTCTTTTGTTACCTTCATAGTTAGCAAAACCCACTTCTGA  300

seq1  GTGGCTTTGAGTACTGTGGGAAACTTTTATCATAAACTGGGATCAGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTGAGTACTGTGGGAAACTTTTATCATAAACTGGGATCAGTTAA  350

seq1  CTCTTCTGTTACCAAGATCTCAAAGCTTTTTATGACTATCACTTCTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTTACCAAGATCTCAAAGCTTTTTATGACTATCACTTCTTTGA  400

seq1  CTCCTTTCTGAAAATCCAGACCTAAATTTATTACAGTAGAGTTGGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCTGAAAATCCAGACCTAAATTTATTACAGTAGAGTTGGACCTT  450

seq1  AAAGTGGCAGAAAATCCAAGACCCAGCCTTTATTTATTAGTGAATGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCAGAAAATCCAAGACCCAGCCTTTATTTATTAGTGAATGGACT  500

seq1  TTAGAGTTTCTGTTGGCAATACTGTATAGATGATCTTTTGAGATTGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTTCTGTTGGCAATACTGTATAGATGATCTTTTGAGATTGTTTT  550

seq1  CCTCCTGTATTTGTGGATCCATTCTTTTCTTTTATATCACACCTTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTATTTGTGGATCCATTCTTTTCTTTTATATCACACCTTTTTTT  600

seq1  TTTTTTTTTTTTGTCATGCTATGATTTATTTAGTGTTTCACTGTGCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGTCATGCTATGATTTATTTAGTGTTTCACTGTGCCTGG  650

seq1  TTGAAAATGTAATCTTTATGAATCCTTGGTAAATAGATACTGTCACAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATGTAATCTTTATGAATCCTTGGTAAATAGATACTGTCACAGTC  700

seq1  ACTGTCACTACTGATTAGGAAACTTAGGCTTAACTATTGGACTGAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACTACTGATTAGGAAACTTAGGCTTAACTATTGGACTGAGCACA  750

seq1  GGCTCCCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCAATGAAGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGGGGTT  800

seq1  TGCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTACCCCCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCCATAGGAGGAACAACAATATGAACCAACCAGTACCCCCAGAG  850

seq1  CTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGGACTCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGGGACTCATG  900

seq1  GCTCCAGCCATATATGTAGCAGAGGATGACCTTGTTGGGACCATCATTGG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTCCAGCCATATATGTAGCAGA-GATGACCTTGTTGGGACCATCATTGG  949

seq1  GAGGAGAGGCCCTTGGTCCTGTGAAGGAAGGCTCCATGTCCCAGTATAGG  1000
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  GAGGAGAGGCCCTTGGTCCTGTG-AGGAA-GCTCCATGTCCCAGTATAGG  997

seq1  GAAACGCCAGAATAGAGAAGCAGGAATGGGTGGGTTGGTGAGCA-GGGGG  1049
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAACGCCAGAATAGAGAAGCAGGAATGGGTGGGTTGGTGAGCAGGGGGG  1047

seq1  AGGAGG  1055
      ||||||
seq2  AGGAGG  1053


seq1: chr16_85873602_85874737
seq2: B6Ng01-336H19.g_64_1190 (reverse)

seq1  GCTGTTCTTTTTCTTAATGGTGAGTAGGAATTATAGAACTAATTTTTAAT  50
      ||||||| ||||| | |||||||||||||| |||||| || |||||| ||
seq2  GCTGTTCCTTTTC-TGATGGTGAGTAGGAA-TATAGACCT-ATTTTTTAT  47

seq1  GATTTTACCTTATTTTATTTTTAGCAGCATAGCTGTTTCTTCCTGTCTTC  100
      || |||||||||||||||||||||||||||||||||||||  ||||| ||
seq2  GA-TTTACCTTATTTTATTTTTAGCAGCATAGCTGTTTCT--CTGTC-TC  93

seq1  TTTCAGCACTTGGGTTATAAGATTGAACATTGACCTAAATATCCATAGCT  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTCAGCACTTGGGTTATTAGATTGAACATTGACCTAAATATCCATAGCT  143

seq1  TGGAAACACCCAATAAATAATCCTGAAGAAGCATCCGAACCTTATACAAT  200
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TGGAAACA-CCAAT-AATAATCCTGAAGAAGCATCCGAACCTTATACAAT  191

seq1  GTTTGCTGTTCCCATTTTGTTTCTAGCTTCACGCTTATGGCTTTCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGTTCCCATTTTGTTTCTAGCTTCACGCTTATGGCTTTCTTTGG  241

seq1  GGCTTTTAGATGGATGTTTATCATGAGTAGTGAGAAGCACTCCCATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAGATGGATGTTTATCATGAGTAGTGAGAAGCACTCCCATTCTT  291

seq1  TGAGAAGCCATTTTGGGTCTAGTGATAAAGGAGCACACACACTGCCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCCATTTTGGGTCTAGTGATAAAGGAGCACACACACTGCCAGAG  341

seq1  GAACAGAGGATGCTGACTAAAGTCATTCTAGGAGCTGAAGGGAGCATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGGATGCTGACTAAAGTCATTCTAGGAGCTGAAGGGAGCATTGT  391

seq1  GTACTCACCATTGTATTTAACAATATGGGAGTGAGGCTAAGCTTTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCACCATTGTATTTAACAATATGGGAGTGAGGCTAAGCTTTAAGTC  441

seq1  ATAGCTCATTGTGGCCTTAGAGTATGTGTTATTTGTTCATATTTTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCATTGTGGCCTTAGAGTATGTGTTATTTGTTCATATTTTCAAAA  491

seq1  AGCATACTTATTATGGAAATATCAAGATGTGACTAGAATGACTCTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACTTATTATGGAAATATCAAGATGTGACTAGAATGACTCTTCATA  541

seq1  TTACCTTAAAATCTGGCTTTATATGTATACCTTCTGTTGGAAATTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAAAATCTGGCTTTATATGTATACCTTCTGTTGGAAATTGACAG  591

seq1  TGAATCCAGATATATAGCTTTCCACTAGTATTTTCTGTCCAAACTTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAGATATATAGCTTTCCACTAGTATTTTCTGTCCAAACTTCTGT  641

seq1  GCTTGCTGAGTAGCTGTACCCTTAGTTCTTTAAATAAGTAACAAGATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGAGTAGCTGTACCCTTAGTTCTTTAAATAAGTAACAAGATAAT  691

seq1  TTCTGTCTGTTTCTCTTATCAGCTCAGGTTGCTGGTGTTCTTGAGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCTGTTTCTCTTATCAGCTCAGGTTGCTGGTGTTCTTGAGTTTTA  741

seq1  CCCACTGGGTCCTTCTCATTATCTGGCAGAGGACTTCCAGATGCAGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGGGTCCTTCTCATTATCTGGCAGAGGACTTCCAGATGCAGCAAA  791

seq1  CAAAGCTATCTCCCTAGACCTCACTGAAGGTTAGGAAGCCCTTGGTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTATCTCCCTAGACCTCACTGAAGGTTAGGAAGCCCTTGGTAGAG  841

seq1  GAAATTCAATAACCTGCCTCCTTTGCACTATTTCTATGTCCATGCTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAATAACCTGCCTCCTTTGCACTATTTCTATGTCCATGCTTACC  891

seq1  CTTATTTCAGAGGCTTGCCTTCCCAGCCAGCTAACTTGTACAAACACTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCAGAGGCTTGCCTTCCCAGCCAGCTAACTTGTACAAACACTGC  941

seq1  AACATTTCTGCAAAGCCCTTGGCCAGGGGTGGGGGAGTCCCACGAGGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCTGCAAAGCCCTTGGCCAGGGGTGGGGGAGTCCCACGAGGCAT  991

seq1  GGCGACTCCTGTTCTGAATCACAAGTCTCCAGATACAGTTACTTAAGAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACTCCTGTTCTGAATCACAAGTCTCCAGATACAGTTACTTAAGAGT  1041

seq1  GTGCACTTTGGCTTCCCAGCCATATCCGAACCACTTCACATTTCTCTTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTTTGGCTTCCCAGCCATATCCGAACCACTTCACATTTCTCTTTG  1091

seq1  GACCTAAATCAGGAAACATTCAGTACTAATGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  GACCTAAATCAGGAAACATTCAGTACTAATGAATTC  1127


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