BAC Information

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BAC

Clone NameB6Ng01-336J06
Chromosome16 (Build37)
Map Location 35,303,245 - 35,425,013
singlet/doubletdoublet
Overlap geneAdcy5, Sec22a, Pdia5
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb
Downstream geneSema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336J06.bB6Ng01-336J06.g
ACCGA121459GA121460
length1,1171,086
definitionB6Ng01-336J06.b B6Ng01-336J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,423,907 - 35,425,013)(35,303,245 - 35,304,338)
sequence
gaattcataacgatctacctgcctctgctgggattaaaggtgtcgctacc
acatccgactgctgtagatattcactgggggggttgttagtttgagccca
gatataagaagccagatatcacggaactggtgcctggctgatgacttcct
agtgctagaatctaccgccagtaccttcttgttacagaatgtagggatca
cgacctgtgtcccaagtcaggtcctaccgcccgtcctcaggaagcagtga
aagaaccaaattaaaagtggaaagcagaccgatgtggtggtgcacacctt
taatcccagcactcagcaggtagaggcgggccagcctggactacagagca
aattccaggatgccagagcaacatagtaagacactatctcaaaaacaaaa
acaaaagtaaataagtggaaagcagaaagggagattttttttttcaacct
ggccgcattgggaagagcgacaaagggatttagtaaacacccccgctccc
ccccccccgccccccgccagtctatctttggggttctgatgtgagatgaa
tgtttgaatagaagaccaaggatacctgaaagcagtcctgaccaaacttg
gtcctgccaactattgacccatcttcctctgggtttcagtgtgtactgta
gaactggatgaaatctgtttcagggagcccggttcctgctccaacaagcg
ccctttcctttttccctggcatgagattccagaggaattcttaagtctct
ggcctcccttgtttcacagtctgatagtcagattgagagattcaactata
gctcttttagccaggccagttacatctgacatcgagtaagcaaagcaacc
caaggctttgccgcgctcgctcgctctctggagaccagcgagactgaggc
tttttagggcagcttcagtccacagaagccagcataagtcttcatagact
tctgaaccagccttttggctcttctgtgagcccgagtcgctcttcctctg
attaattctccagcccctgcctgctgagccactgcagtgtttccttgctg
tcgccatctacagccggacacgcctgttctaattccctttgtctcatcca
agggttttttttttttt
gaattctgacaatccttggcatacacccgtgccatcctttgccctctcac
caccccagggagccttcttagtctgcagaactaagacagacaggcctgaa
ctctggctctggagtgacatccaggctctactatttgttaactgtaacca
caggcgggcaatacacatttctggagccttgggcatggccataatagttt
cctataaagagacggaatgagactagagccagctcttctggaggctccaa
atagcacttaagtgacaaatccctgggtacttgccattccacggatgagc
ccctcattgtccccaagagccagtggtggagggccttccctgctctcatg
tcagggcagcaacagagcataggcacacagaggtagatgtgcccacagca
gatcatggaaaaggtcactgatagcctgtcctctcccttcctatgcctcc
tcaggttactacagatatgtaccaggtgctggccgccaacacataccagc
tggagtgccggggtgtggtcaaggtcaagggcaagggtgagatgatgact
tacttcctcaatggagggcctcccctcagttagcagataccagccagcgg
tgccagcatcctggcctccagaggattggaacagcttttgtgcaccatgg
gcagatagggcctgtgctccaggctcacagctgtgctggtaaaattccca
ctttgactcagaagcaacttctgcctttgctggtgggcatggcttttggc
ctaggcccagggtgccagcgtcctgcaagcaccgagctgaccaaagatgt
ttccccttggcagaagactctgctagactcgagttgaaccttgagttttc
tgacaagtgctgctgccgcatggtggaggtgctaccggagccttcattgg
tggtgcagcatggcacatggtggctgggcctgagggaggccttggccatg
atggggtggttagcaagctcaagctggcctggggtgtccatggactcagg
gtctgctttcactgtggagaggtcactccccctcacaacgttgggggaca
gaactgggagacgtgtggcctgttgcatcctctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35423907_35425013
seq2: B6Ng01-336J06.b_42_1158 (reverse)

seq1  AAAAAAAAAAAAACCCTTTGGAT--GACAAATGTGAATAG-ACAAGCGTT  47
      |||||||||||||||| ||||||  |||||| |  | ||| ||| ||| |
seq2  AAAAAAAAAAAAACCC-TTGGATGAGACAAAGGGAATTAGAACAGGCG-T  48

seq1  GTTCCCTGCCTGTAAGTGCCGACAGC-AGGGAACACTGCAGTGCTCCAGC  96
      ||   | | |||||  || ||||||| ||| ||||||||||||   ||||
seq2  GT---CCGGCTGTAGATGGCGACAGCAAGGAAACACTGCAGTGGCTCAGC  95

seq1  AGGCA-GGGCTGGAGAATTAATCAGA-GAAGAGCGACTCGGGCTCACAGA  144
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCAGGGGCTGGAGAATTAATCAGAGGAAGAGCGACTCGGGCTCACAGA  145

seq1  GAAGC--AAAAGCTGGTTCAG-AGTCTATGAAGAC-TATGCTGGC-TCTG  189
        |||  ||| |||||||||| ||||||||||||| ||||||||| ||||
seq2  AGAGCCAAAAGGCTGGTTCAGAAGTCTATGAAGACTTATGCTGGCTTCTG  195

seq1  TGGACTG-AGCTGCCCT-AAAAGCCTCAGTCTCGCTGGTCTCCAGAGAGC  237
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGACTGAAGCTGCCCTAAAAAGCCTCAGTCTCGCTGGTCTCCAGAGAGC  245

seq1  GAGCGAGCGCGGCAAAGCCTTTGGTTGCTTTGCTTACTCGATGTCAGATT  287
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  GAGCGAGCGCGGCAAAGCCTTGGGTTGCTTTGCTTACTCGATGTCAGA-T  294

seq1  GTAACTGGCCTGGCT-AAAGAGCTATAGTTGAATCTCTCAATCTGACTAT  336
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTAACTGGCCTGGCTAAAAGAGCTATAGTTGAATCTCTCAATCTGACTAT  344

seq1  CAGACTGTG-AACAAGGGAGGCCAGAGACTTAAGAATTCCTCTGGAATCT  385
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGTGAAACAAGGGAGGCCAGAGACTTAAGAATTCCTCTGGAATCT  394

seq1  CATGCCAGGG-AAAAGGAAAGGGCGCTTGTTGGAGCAGGAACCGGGCTCC  434
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGGGAAAAAGGAAAGGGCGCTTGTTGGAGCAGGAACCGGGCTCC  444

seq1  CTGAAACAGATTTCATCCAGTTCTACAGTACACACTGAAACCCAGAGGAA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACAGATTTCATCCAGTTCTACAGTACACACTGAAACCCAGAGGAA  494

seq1  GATGGGTCAATAGTTGGCAGGACCAAGTTTGGTCAGGACTGCTTTCAGGT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTCAATAGTTGGCAGGACCAAGTTTGGTCAGGACTGCTTTCAGGT  544

seq1  ATCCTTGGTCTTCTATTCAAACATTCATCTCACATCAGAACCCCAAAGAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGTCTTCTATTCAAACATTCATCTCACATCAGAACCCCAAAGAT  594

seq1  AGACTGGCGGGGGGCGGGGGGGGGGGAGCGGGGGTGTTTACTAAATCCCT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCGGGGGGCGGGGGGGGGGGAGCGGGGGTGTTTACTAAATCCCT  644

seq1  TTGTCGCTCTTCCCAATGCGGCCAGGTTGAAAAAAAAAATCTCCCTTTCT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGCTCTTCCCAATGCGGCCAGGTTGAAAAAAAAAATCTCCCTTTCT  694

seq1  GCTTTCCACTTATTTACTTTTGTTTTTGTTTTTGAGATAGTGTCTTACTA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCACTTATTTACTTTTGTTTTTGTTTTTGAGATAGTGTCTTACTA  744

seq1  TGTTGCTCTGGCATCCTGGAATTTGCTCTGTAGTCCAGGCTGGCCCGCCT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTCTGGCATCCTGGAATTTGCTCTGTAGTCCAGGCTGGCCCGCCT  794

seq1  CTACCTGCTGAGTGCTGGGATTAAAGGTGTGCACCACCACATCGGTCTGC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCTGAGTGCTGGGATTAAAGGTGTGCACCACCACATCGGTCTGC  844

seq1  TTTCCACTTTTAATTTGGTTCTTTCACTGCTTCCTGAGGACGGGCGGTAG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTTTTAATTTGGTTCTTTCACTGCTTCCTGAGGACGGGCGGTAG  894

seq1  GACCTGACTTGGGACACAGGTCGTGATCCCTACATTCTGTAACAAGAAGG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGACTTGGGACACAGGTCGTGATCCCTACATTCTGTAACAAGAAGG  944

seq1  TACTGGCGGTAGATTCTAGCACTAGGAAGTCATCAGCCAGGCACCAGTTC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCGGTAGATTCTAGCACTAGGAAGTCATCAGCCAGGCACCAGTTC  994

seq1  CGTGATATCTGGCTTCTTATATCTGGGCTCAAACTAACAACCCCCCCAGT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATATCTGGCTTCTTATATCTGGGCTCAAACTAACAACCCCCCCAGT  1044

seq1  GAATATCTACAGCAGTCGGATGTGGTAGCGACACCTTTAATCCCAGCAGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTACAGCAGTCGGATGTGGTAGCGACACCTTTAATCCCAGCAGA  1094

seq1  GGCAGGTAGATCGTTATGAATTC  1107
      |||||||||||||||||||||||
seq2  GGCAGGTAGATCGTTATGAATTC  1117

seq1: chr16_35303245_35304338
seq2: B6Ng01-336J06.g_63_1148

seq1  GAATTCTGACAATCCTTGGCATACACCCGTGCCATCCTTTGCCCTCTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAATCCTTGGCATACACCCGTGCCATCCTTTGCCCTCTCAC  50

seq1  CACCCCAGGGAGCCTTCTTAGTCTGCAGAACTAAGACAGACAGGCCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGGGAGCCTTCTTAGTCTGCAGAACTAAGACAGACAGGCCTGAA  100

seq1  CTCTGGCTCTGGAGTGACATCCAGGCTCTACTATTTGTTAACTGTAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTCTGGAGTGACATCCAGGCTCTACTATTTGTTAACTGTAACCA  150

seq1  CAGGCGGGCAATACACATTTCTGGAGCCTTGGGCATGGCCATAATAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGGGCAATACACATTTCTGGAGCCTTGGGCATGGCCATAATAGTTT  200

seq1  CCTATAAAGAGACGGAATGAGACTAGAGCCAGCTCTTCTGGAGGCTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAAGAGACGGAATGAGACTAGAGCCAGCTCTTCTGGAGGCTCCAA  250

seq1  ATAGCACTTAAGTGACAAATCCCTGGGTACTTGCCATTCCACGGATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTTAAGTGACAAATCCCTGGGTACTTGCCATTCCACGGATGAGC  300

seq1  CCCTCATTGTCCCCAAGAGCCAGTGGTGGAGGGCCTTCCCTGCTCTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATTGTCCCCAAGAGCCAGTGGTGGAGGGCCTTCCCTGCTCTCATG  350

seq1  TCAGGGCAGCAACAGAGCATAGGCACACAGAGGTAGATGTGCCCACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGCAACAGAGCATAGGCACACAGAGGTAGATGTGCCCACAGCA  400

seq1  GATCATGGAAAAGGTCACTGATAGCCTGTCCTCTCCCTTCCTATGCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGGAAAAGGTCACTGATAGCCTGTCCTCTCCCTTCCTATGCCTCC  450

seq1  TCAGGTTACTACAGATATGTACCAGGTGCTGGCCGCCAACACATACCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTACTACAGATATGTACCAGGTGCTGGCCGCCAACACATACCAGC  500

seq1  TGGAGTGCCGGGGTGTGGTCAAGGTCAAGGGCAAGGGTGAGATGATGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGCCGGGGTGTGGTCAAGGTCAAGGGCAAGGGTGAGATGATGACT  550

seq1  TACTTCCTCAATGGAGGGCCTCCCCTCAGTTAGCAGATACCAGCCAGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTCAATGGAGGGCCTCCCCTCAGTTAGCAGATACCAGCCAGCGG  600

seq1  TGCCAGCATCCTGGCCTCCAGAGGATTGGAACAGCTTTTGTGCACCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCATCCTGGCCTCCAGAGGATTGGAACAGCTTTTGTGCACCATGG  650

seq1  GCAGATAGGGCCTGTGCTCCAGGCTCACAGCTGTGCTGGTAAAATTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGGGCCTGTGCTCCAGGCTCACAGCTGTGCTGGTAAAATTCCCA  700

seq1  CTTTGACTCAGAAGCAACTTCTGCCTTTGCTGGTGGGCATGGCTTTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTCAGAAGCAACTTCTGCCTTTGCTGGTGGGCATGGCTTTTGGC  750

seq1  CTAGGCCCAGGGTGCCAGCGTCCTGCAAGCACCGAGCTGACCAAAGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCCAGGGTGCCAGCGTCCTGCAAGCACCGAGCTGACCAAAGATGT  800

seq1  TTCCCCTTGGCAGAAGACTCTGCTAGACTCGAGTTGAACCTTGAGTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTGGCAGAAGACTCTGCTAGACTCGAGTTGAACCTTGAGTTTTC  850

seq1  TGACAAGTGCTGCTGCCGCATGGTGGAGGTGCTACCGGAGCCTTCATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTGCTGCTGCCGCATGGTGGAGGTGCTACCGGAGCCTTCATTGG  900

seq1  TGGTGCAGCATGGCACATGGTGGCT-GGCCTGAGGGGAGGCCTTGGCCAT  949
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  TGGTGCAGCATGGCACATGGTGGCTGGGCCTGA-GGGAGGCCTTGGCCAT  949

seq1  GATGGGGTGGTAGGCAAGCTCAAAGCTGGCCTGGGGGTGTCCATGGAACT  999
      |||||||||||  |||||||| |||||||||| ||||||||||||| |||
seq2  GATGGGGTGGTTAGCAAGCTC-AAGCTGGCCT-GGGGTGTCCATGG-ACT  996

seq1  CAAGGGTCTGCTTTTCCACTGTGGAGAGGTCACTCCCCCTCACAACGTTT  1049
      | ||||||||||||  ||||||||||||||||||||||||||||||| ||
seq2  C-AGGGTCTGCTTT--CACTGTGGAGAGGTCACTCCCCCTCACAACG-TT  1042

seq1  GGGGGACAGGAACTGGGAGACGTGTGGCCTGTGCCATCCTCTCCC  1094
      |||||||| |||||||||||||||||||||||  |||||||||||
seq2  GGGGGACA-GAACTGGGAGACGTGTGGCCTGTTGCATCCTCTCCC  1086