BAC Information

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BAC

Clone NameB6Ng01-338C16
Chromosome16 (Build37)
Map Location 31,321,392 - 31,461,942
singlet/doubletdoublet
Overlap gene1700007E05Rik, Bdh1
Upstream geneAtp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2, Ppp1r2, Apod
Downstream geneGm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338C16.bB6Ng01-338C16.g
ACCGA122552GA122553
length1,1941,120
definitionB6Ng01-338C16.b B6Ng01-338C16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,460,753 - 31,461,942)(31,321,392 - 31,322,520)
sequence
gaattctctctcattctctctcattctttctctctctctctctctctccc
tccctctctctctctctctcctccattcctctatcctcccctccgatgct
tccactaatgtggaggcaggatgaccctgagccccgccttggaatctctc
ctgcccctgctctcccaaccctcacaacagggccatggccattctacagt
acttcggacatggcagatgaatgtgccatgaggaagttgggccaacactc
tgccttctccgaactctagtctagaaagaggttggccttaatgctaccac
tgtgtccattctattaactgagataagtctagcccaaatctgcactccta
atgggaagtctaggaagcaggcctagagacagaaactagaatgctgggtt
tgtcttgtcactctgtctttctggctatgatctcccataaatcttgccgc
ctccctgaggctctggtttcttatctgcaaagtggacttagcattcccct
accgtacattgcctgcttcccatggaagatgaatgggggacagagcagtt
gttagggcacgtgcaagtgggcagttggtggcacctcgccagaggtgaca
atttcttggctgcttgaagggagctcaggtggccatccagcccaaaatgt
gtctcctggtacaccagtgactggaatcgccttttcaaagagggaggtgt
agggaaatcttgtcaaaagagggatctgggcttttaaacctctcttagcc
acctctgaatatcaagaacactaagaatgtttaagttgctctgtggaggt
ctgggtcagagccaggtgctaaaggaaggatgttagacagaggaggcagc
tttagctcagtcagtctttttgagcccaggaaagcctttccaggtaatga
ggcccctatcaccagcagggttcaagtgcagagagcctggttccctgtcc
catcctcggacgctcaccctatgccttctgaagctgcctcatcctttagt
gcctgtgcatgccaagaaaggctcttctgttgccctggggattgactagt
tcatcacaaccggagttcttgctgctttcccgtcgcttcttcaagtaaaa
ctgaaactattctgtcccaagctctagttctgtgccttcgactctctgca
ggggtggacccaagtgtttctaaatctgttctctggaaatgccc
gaattcacgcccagtcactgcccatctcggggcgtagtaatggggtgatg
ggcgagcaactagtcaggtgctgtcacgccacatcaggtgctgaaacgtc
atgctgcgggctatataagcagcaccattttccgggttggggtcttcctt
atgttgaagcaataaaagctttgccgtagaaggatctggttgtctgagtg
aattcttgcgggcgagatactagctcgggcaagaagggaatacttgggga
gcaatgtttacacaatattgacccaggagattcttagaataaggactgta
atcagatgtggggcacagagatcagcatttgcataatacaaggataatct
ttacacagtgcacaatagcattgtgcctgcccctgcccctgccccttctt
cttccccttcctgttcttcttccactgagtaattagggctgtctgcatga
gcatgggtgagcggttatttacttgagtgagggtgacttctcattggcta
caccactgagaaagactattcattctcctgccaccattagctacctagag
ctcctcagggagggctggagctttgtgggccttgtctcctccctagtcca
agatgaaaagctgaaggtcccagtcttaaagggtactttcttttgaaacg
cagagaaacccagaataaactgttttggggagtgatttaactgaacactg
gacagacaagcctctttctagcttgactagaaataacacctttgttctgt
gattgtttcggtaatgaataagctttcaggtttgtttgtttgtgttagag
ttgatcgtgacttcttccaggtctcagaggttaaaacctcccacatcttc
aatctggaccatcacaagtatccaatgggagatgttagaaaccaggtttt
gtctccagttaggatgctgagaagaagtcagcatccttatcacctagcca
ggccccctttccctatctctaactcctagtctctcatgagtgccgcatga
cccacagcgtagatctaagcatgctgtgtcttttcctcttcttagctttt
ctatgtaaagcttaattctgtctggtgtttctgaaccatgctgtatgtct
cgccatctctacacaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31460753_31461942
seq2: B6Ng01-338C16.b_43_1236 (reverse)

seq1  GGGCATTT-CAGAGGACAGATTTTAGAAACACTTGGGCCCACACCCTCCA  49
      |||||||| ||||| ||||| |||||||||||||||| |||| |||| ||
seq2  GGGCATTTCCAGAGAACAGA-TTTAGAAACACTTGGGTCCAC-CCCTGCA  48

seq1  GGAGGTCGGGAGGCACAGGACTAGAGCTTGGGACAG-ATAGTCTCAGTTT  98
      |   ||| | |||||||| ||||||||||||||||| ||||| |||||||
seq2  GAGAGTC-GAAGGCACAGAACTAGAGCTTGGGACAGAATAGTTTCAGTTT  97

seq1  TACTTGAAG-AGCGACGGG-AAGCA-CCAGGACTCGGGTGTTGATGACCT  145
      ||||||||| ||||||||| ||||| | || |||| |||  |||||| ||
seq2  TACTTGAAGAAGCGACGGGAAAGCAGCAAGAACTCCGGTTGTGATGAACT  147

seq1  AGTCAA-CCCCAGGGC-ACAG-AGAGCC-TTCCTGGCATGCACAGGCACT  191
      |||||| ||||||||| |||| |||||| ||| |||||||||||||||||
seq2  AGTCAATCCCCAGGGCAACAGAAGAGCCTTTCTTGGCATGCACAGGCACT  197

seq1  AAAGGATGAGGCAGCTTCAGAAGGCATAGGGTGAGCGTCCGAGGATGGGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGAGGCAGCTTCAGAAGGCATAGGGTGAGCGTCCGAGGATGGGA  247

seq1  CAGGG-ACCAGGCTTCTTCTGCACTTGAACCCTGCTGGTGATAGGGGCCT  290
      ||||| ||||||||   |||||||||||||||||||||||||||||||||
seq2  CAGGGAACCAGGCT--CTCTGCACTTGAACCCTGCTGGTGATAGGGGCCT  295

seq1  CATTACCTGGGAAAGGCTTTCCTGGGCTCAAAAAGACTGACTGAGCTAAA  340
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCT-GGAAAGGCTTTCCTGGGCTCAAAAAGACTGACTGAGCTAAA  344

seq1  GCTGCCTCCTCTGTCTAACATCCTTCCTTTAGCACCTGGCTCTGACCCAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTCCTCTGTCTAACATCCTTCCTTTAGCACCTGGCTCTGACCCAG  394

seq1  ACCTCCACAGAGCAACTTAAACATTCTTAGTGTTCTTGATATTCAGAGGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACAGAGCAACTTAAACATTCTTAGTGTTCTTGATATTCAGAGGT  444

seq1  GGCTAAGAGAGGTTTAAAAGCCCAGATCCCTCTTTTGACAAGATTTCCCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGAGAGGTTTAAAAGCCCAGATCCCTCTTTTGACAAGATTTCCCT  494

seq1  ACACCTCCCTCTTTGAAAAGGCGATTCCAGTCACTGGTGTACCAGGAGAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCCTCTTTGAAAAGGCGATTCCAGTCACTGGTGTACCAGGAGAC  544

seq1  ACATTTTGGGCTGGATGGCCACCTGAGCTCCCTTCAAGCAGCCAAGAAAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGGGCTGGATGGCCACCTGAGCTCCCTTCAAGCAGCCAAGAAAT  594

seq1  TGTCACCTCTGGCGAGGTGCCACCAACTGCCCACTTGCACGTGCCCTAAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTCTGGCGAGGTGCCACCAACTGCCCACTTGCACGTGCCCTAAC  644

seq1  AACTGCTCTGTCCCCCATTCATCTTCCATGGGAAGCAGGCAATGTACGGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTGTCCCCCATTCATCTTCCATGGGAAGCAGGCAATGTACGGT  694

seq1  AGGGGAATGCTAAGTCCACTTTGCAGATAAGAAACCAGAGCCTCAGGGAG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATGCTAAGTCCACTTTGCAGATAAGAAACCAGAGCCTCAGGGAG  744

seq1  GCGGCAAGATTTATGGGAGATCATAGCCAGAAAGACAGAGTGACAAGACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAAGATTTATGGGAGATCATAGCCAGAAAGACAGAGTGACAAGACA  794

seq1  AACCCAGCATTCTAGTTTCTGTCTCTAGGCCTGCTTCCTAGACTTCCCAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCATTCTAGTTTCTGTCTCTAGGCCTGCTTCCTAGACTTCCCAT  844

seq1  TAGGAGTGCAGATTTGGGCTAGACTTATCTCAGTTAATAGAATGGACACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGCAGATTTGGGCTAGACTTATCTCAGTTAATAGAATGGACACA  894

seq1  GTGGTAGCATTAAGGCCAACCTCTTTCTAGACTAGAGTTCGGAGAAGGCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCATTAAGGCCAACCTCTTTCTAGACTAGAGTTCGGAGAAGGCA  944

seq1  GAGTGTTGGCCCAACTTCCTCATGGCACATTCATCTGCCATGTCCGAAGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGCCCAACTTCCTCATGGCACATTCATCTGCCATGTCCGAAGT  994

seq1  ACTGTAGAATGGCCATGGCCCTGTTGTGAGGGTTGGGAGAGCAGGGGCAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAATGGCCATGGCCCTGTTGTGAGGGTTGGGAGAGCAGGGGCAG  1044

seq1  GAGAGATTCCAAGGCGGGGCTCAGGGTCATCCTGCCTCCACATTAGTGGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTCCAAGGCGGGGCTCAGGGTCATCCTGCCTCCACATTAGTGGA  1094

seq1  AGCATCGGAGGGGAGGATAGAGGAATGGAGGAGAGAGAGAGAGAGAGGGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCGGAGGGGAGGATAGAGGAATGGAGGAGAGAGAGAGAGAGAGGGA  1144

seq1  GGGAGAGAGAGAGAGAGAGAGAAAGAATGAGAGAGAATGAGAGAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGAGAGAGAGAGAGAGAAAGAATGAGAGAGAATGAGAGAGAATTC  1194

seq1: chr16_31321392_31322520
seq2: B6Ng01-338C16.g_67_1186

seq1  GAATTCACGCCCAGTCACTGCCCATCTCGGGGCGTAGTAATGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGCCCAGTCACTGCCCATCTCGGGGCGTAGTAATGGGGTGATG  50

seq1  GGCGAGCAACTAGTCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGCAACTAGTCAGGTGCTGTCACGCCACATCAGGTGCTGAAACGTC  100

seq1  ATGCTGCGGGCTATATAAGCAGCACCATTTTCCGGGTTGGGGTCTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCGGGCTATATAAGCAGCACCATTTTCCGGGTTGGGGTCTTCCTT  150

seq1  ATGTTGAAGCAATAAAAGCTTTGCCGTAGAAGGATCTGGTTGTCTGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAGCAATAAAAGCTTTGCCGTAGAAGGATCTGGTTGTCTGAGTG  200

seq1  AATTCTTGCGGGCGAGATACTAGCTCGGGCAAGAAGGGAATACTTGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCGGGCGAGATACTAGCTCGGGCAAGAAGGGAATACTTGGGGA  250

seq1  GCAATGTTTACACAATATTGACCCAGGAGATTCTTAGAATAAGGACTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTTACACAATATTGACCCAGGAGATTCTTAGAATAAGGACTGTA  300

seq1  ATCAGATGTGGGGCACAGAGATCAGCATTTGCATAATACAAGGATAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGTGGGGCACAGAGATCAGCATTTGCATAATACAAGGATAATCT  350

seq1  TTACACAGTGCACAATAGCATTGTGCCTGCCCCTGCCCCTGCCCCTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGTGCACAATAGCATTGTGCCTGCCCCTGCCCCTGCCCCTTCTT  400

seq1  CTTCCCCTTCCTGTTCTTCTTCCACTGAGTAATTAGGGCTGTCTGCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTTCCTGTTCTTCTTCCACTGAGTAATTAGGGCTGTCTGCATGA  450

seq1  GCATGGGTGAGCGGTTATTTACTTGAGTGAGGGTGACTTCTCATTGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGAGCGGTTATTTACTTGAGTGAGGGTGACTTCTCATTGGCTA  500

seq1  CACCACTGAGAAAGACTATTCATTCTCCTGCCACCATTAGCTACCTAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTGAGAAAGACTATTCATTCTCCTGCCACCATTAGCTACCTAGAG  550

seq1  CTCCTCAGGGAGGGCTGGAGCTTTGTGGGCCTTGTCTCCTCCCTAGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGGGAGGGCTGGAGCTTTGTGGGCCTTGTCTCCTCCCTAGTCCA  600

seq1  AGATGAAAAGCTGAAGGTCCCAGTCTTAAAGGGTACTTTCTTTTGAAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAGCTGAAGGTCCCAGTCTTAAAGGGTACTTTCTTTTGAAACG  650

seq1  CAGAGAAACCCAGAATAAACTGTTTTGGGGAGTGATTTAACTGAACACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCAGAATAAACTGTTTTGGGGAGTGATTTAACTGAACACTG  700

seq1  GACAGACAAGCCTCTTTCTAGCTTGACTAGAAATAACACCTTTGTTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAAGCCTCTTTCTAGCTTGACTAGAAATAACACCTTTGTTCTGT  750

seq1  GATTGTTTCGGTAATGAATAAGCTTTCAGGTTTGTTTGTTTGTGTTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTCGGTAATGAATAAGCTTTCAGGTTTGTTTGTTTGTGTTAGAG  800

seq1  TTGATCGTGACTTCTTCCAGGTCTCAGAGGTTAAAACCTCCAACATCTTC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGATCGTGACTTCTTCCAGGTCTCAGAGGTTAAAACCTCCCACATCTTC  850

seq1  AATCTGGACCATCACAAGTATCCAATGGGAGATGTTAGAAACCAGGGTTT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATCTGGACCATCACAAGTATCCAATGGGAGATGTTAGAAACCA-GGTTT  899

seq1  TGTCTCCAGTTAGGATGCTGAGGAAGAAGTCAGCATCCTTATCACCTAGC  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCTCCAGTTAGGATGCTGA-GAAGAAGTCAGCATCCTTATCACCTAGC  948

seq1  CAGGCCCCCTTTCCCTATCTCTAACTCCTAGTCTCTCATGAGTGCCGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCCTTTCCCTATCTCTAACTCCTAGTCTCTCATGAGTGCCGCAT  998

seq1  GACCCCACAGCGTAGATCTAAGCATTGCTGTGTCTTTTCCTCTCCTAGGC  1050
      || ||||||||||||||||||||| |||||||||||||||||| ||  ||
seq2  GA-CCCACAGCGTAGATCTAAGCA-TGCTGTGTCTTTTCCTCTTCTTAGC  1046

seq1  CTTTCTATGTAAAGCCTAATTCTGTCTGGTG-TTCTGAACCATGCCTTGT  1099
       |||||||||||||| ||||||||||||||| |||||||||||||  || 
seq2  TTTTCTATGTAAAGCTTAATTCTGTCTGGTGTTTCTGAACCATGC--TG-  1093

seq1  TATGGTCTCCGCACATCTCTACACAAATGC  1129
      ||| |||| ||| |||||||||||||||||
seq2  TAT-GTCT-CGC-CATCTCTACACAAATGC  1120