BAC Information

Click to search

BAC

Clone NameB6Ng01-338D09
Chromosome16 (Build37)
Map Location 86,290,862 - 86,291,962
singlet/doubletsinglet
Overlap genenone
Upstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338D09.bB6Ng01-338D09.g
ACCGA122586GA122587
length1,1631,091
definitionB6Ng01-338D09.b B6Ng01-338D09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcaagtaccacccctgccaggctgtatacattctttttaaa
ccatgctgttttactgattttttttattagatattttcacacttggactc
aacacataatggtcacacactgccactcttgtcaacccactcctccccac
aaatctctttcaagctgttacataaatgaaaacagagaatataccacatt
tgagggcatgttactgaggatcaaaggtaggatatcttgagcatgctaag
catgagcgattcacaggattttattgcagacatgaatgtaactttttaca
tatgactgatcatttagggtaattgcctcaattattactgcagaatccat
atattaaaaatggctaccttgccaaaaggaatctacagattcaatgcaat
ccccatcaaaattccaaatcaatacttcaacgaattagaagaagcaattt
gcaaattcatctggaataacaaaaaacctaggatagcaaaaattcttctc
aaggataaaagaagctctggtggaatcaccatacctgacctaaagcttta
ctacagagaaattgtgataaaaactgcatggtactggtatagagacagac
aagtagactaatggaatagaattgaagacccagaaatgaacccacacacc
tatggtcacttgatcttcgacaagggagctaaaaccatccagtggaagaa
agacagcattttcaacaattggtgctggcacaactggttgttatcatgta
gaagaatgcgaatcgatccatgcttatctccttgtactaaggtcaaatct
aagtggatcaaggaacttcacataaaaccagagacactgaaacttataga
ggagaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcc
tgaacagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgg
gacctaatgaaactccaaagtttctgcaagcaaagacacctttcaataga
caaaagaccaccaacagattgggaaaggatctttactatcctaatcagat
agggcacttatatcacatatataaagacctcagaagtgacttcgaaaaat
caaataccccattaaaatggggctcgagactgaacaagattcctcacctg
aagaattcgaatg

gaattcatatttatctgcttttagagaaaaaatatggtaaggttaactaa
gagaacagatgtttggtcgtggatgaaggaattagcccttttagagttga
atgtgtggtggaagaagactgacacataagagtgaggaaaaaggtagaga
ggtagtgctaatcttatcaaaaaggagggagttggtcctgatgttgtcat
ggtgtgaaaaggaagccaagcctctgctgttacatcacgcgataaaacgt
gggaaatggaaatcaattttgagaagctcatgaaattcttttttcagctc
ccacaaagagtctctttaactgccccaccctagcctcttcataactaccc
ctggtagttttctacagtgctggacatgaaatcatgtgcctatgcttgtg
tttgacactctagaattctcccaaccattgcagatttgcatgaaaaaaat
atgaaaggaattaaacatcagggtttagtcagagtgtagccagttcttct
taaacgtgcttgcctgtttctgtttgttttcagggaacactcagattact
atttagttctggggaggagccttccttcatttcatggatagattatattt
tattcctagcatgaatgtataatgccatttgtttaattaagtattgttat
attcagtggtaacttaccatcctggcctttctcagcatctatactacacg
atattccaacatcctttcatctactttagtaaaaatcaacatcagtgggt
ctctgctaaaagcccaaagagatttgttaatgtgctcagttcttactaaa
cagctgtaattgatttaagccagagagaaatactacagggtttatattac
aagcaacgtttaatgtgttaccacaatttatttttaaaatatataatttt
gttgacctgatagtttccatacttaaggagacaataaaactgatgactca
ctactaactgaagttttaaagatttattatcccattctatttcaaattct
gcttccttactctgctgatcaatcacccattttggtcaaatctatcacta
atgatcagtaaacataatagaagaacactgtattattttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86290862_86291962
seq2: B6Ng01-338D09.g_69_1159

seq1  GAATTCATATTTATCTGCTTTTAGAGAAAAAATATGGTAAGGTTAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTATCTGCTTTTAGAGAAAAAATATGGTAAGGTTAACTAA  50

seq1  GAGAACAGATGTTTGGTCGTGGATGAAGGAATTAGCCCTTTTAGAGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGATGTTTGGTCGTGGATGAAGGAATTAGCCCTTTTAGAGTTGA  100

seq1  ATGTGTGGTGGAAGAAGACTGACACATAAGAGTGAGGAAAAAGGTAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGTGGAAGAAGACTGACACATAAGAGTGAGGAAAAAGGTAGAGA  150

seq1  GGTAGTGCTAATCTTATCAAAAAGGAGGGAGTTGGTCCTGATGTTGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGCTAATCTTATCAAAAAGGAGGGAGTTGGTCCTGATGTTGTCAT  200

seq1  GGTGTGAAAAGGAAGCCAAGCCTCTGCTGTTACATCACGCGATAAAACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAAAAGGAAGCCAAGCCTCTGCTGTTACATCACGCGATAAAACGT  250

seq1  GGGAAATGGAAATCAATTTTGAGAAGCTCATGAAATTCTTTTTTCAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGGAAATCAATTTTGAGAAGCTCATGAAATTCTTTTTTCAGCTC  300

seq1  CCACAAAGAGTCTCTTTAACTGCCCCACCCTAGCCTCTTCATAACTACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGAGTCTCTTTAACTGCCCCACCCTAGCCTCTTCATAACTACCC  350

seq1  CTGGTAGTTTTCTACAGTGCTGGACATGAAATCATGTGCCTATGCTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTTTTCTACAGTGCTGGACATGAAATCATGTGCCTATGCTTGTG  400

seq1  TTTGACACTCTAGAATTCTCCCAACCATTGCAGATTTGCATGAAAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACACTCTAGAATTCTCCCAACCATTGCAGATTTGCATGAAAAAAAT  450

seq1  ATGAAAGGAATTAAACATCAGGGTTTAGTCAGAGTGTAGCCAGTTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGAATTAAACATCAGGGTTTAGTCAGAGTGTAGCCAGTTCTTCT  500

seq1  TAAACGTGCTTGCCTGTTTCTGTTTGTTTTCAGGGAACACTCAGATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGTGCTTGCCTGTTTCTGTTTGTTTTCAGGGAACACTCAGATTACT  550

seq1  ATTTAGTTCTGGGGAGGAGCCTTCCTTCATTTCATGGATAGATTATATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTCTGGGGAGGAGCCTTCCTTCATTTCATGGATAGATTATATTT  600

seq1  TATTCCTAGCATGAATGTATAATGCCATTTGTTTAATTAAGTATTGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAGCATGAATGTATAATGCCATTTGTTTAATTAAGTATTGTTAT  650

seq1  ATTCAGTGGTAACTTACCATCCTGGCCTTTCTCAGCATCTATACTACACG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGGTAACTTACCATCCTGGCCTTTCTCAGCATCTATACTACACG  700

seq1  ATATTCCAACATCCTTTCATCTACTTTAGTAAAAATCAACATCAGTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCAACATCCTTTCATCTACTTTAGTAAAAATCAACATCAGTGGGT  750

seq1  CTCTGCTAAAAGCCCAAAGAGATTTGTTAATGTGCTCAGTTCTTACTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAAAAGCCCAAAGAGATTTGTTAATGTGCTCAGTTCTTACTAAA  800

seq1  CAGCTGTAATTGATTTAAGCCAGAGAGAAATACTACAGGGTTTATATTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAATTGATTTAAGCCAGAGAGAAATACTACAGGGTTTATATTAC  850

seq1  AAGCAACGTTTAATGTGTTACCACAATTTATTTTTAAAATATATAATTTT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAGCAACGTTTAATGTGTTACCACAATTTATTTTTAAAATATATAA-TTT  899

seq1  TGTTGACCTGATAGTTTCCATACTTAAGGAGACAATAAAACTGATGACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACCTGATAGTTTCCATACTTAAGGAGACAATAAAACTGATGACTC  949

seq1  ACTACTAACTGAAGTTTTAAAGATTTATTTATCCCATTCTATTTCAAATT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTACTAACTGAAGTTTTAAAGATTTA-TTATCCCATTCTATTTCAAATT  998

seq1  CTGCTTCCTTACTCTGCTTGATTCAATCACCCATTTTGGTCAAATCTATT  1050
      ||||||||||||||||| ||| ||||||||||||||||||||||||||| 
seq2  CTGCTTCCTTACTCTGC-TGA-TCAATCACCCATTTTGGTCAAATCTAT-  1045

seq1  CCACCTAAATGATTCAGTAAACATAATAGAAGAACACTTGTATTATTTTG  1100
       |||   ||||| |||||||||||||||||||||||| ||||||||||||
seq2  -CAC--TAATGA-TCAGTAAACATAATAGAAGAACAC-TGTATTATTTTG  1090

seq1  T  1101
      |
seq2  T  1091


| Home | SequenceCutter | Blast | Download |