BAC Information

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BAC

Clone NameB6Ng01-338F16
Chromosome16 (Build37)
Map Location 52,269,342 - 52,383,318
singlet/doubletdoublet
Overlap geneAlcam
Upstream geneLOC627543, Cblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F16.bB6Ng01-338F16.g
ACCGA122685GA122686
length7831,166
definitionB6Ng01-338F16.b B6Ng01-338F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,382,761 - 52,383,318)(52,269,342 - 52,270,508)
sequence
gaattctatcttggtgatatataggaaatgggagtctaaaatgtaaaata
ttttattattctcaaagacaaaatgcctagaagtatagacacagttctaa
gatcttttgagggatctataatatatttgaaatatgtatgcattcatgct
tgtacatatgttggtgtgtgagcatgtattttagtttacatgttgtgtgt
atacatacatgtgcattattttattaaaaatagattccttttctataatt
atgttctgattatagttagctctccctctactccatccagttcctcctta
cctccccttccctgcaggttcactttctttctgtcttattagaaaagagc
aggtttctaagagacagcaaccagacatgacaatatagtaagatgaagca
aaaacatttcccctcaaagttgaacacagcaaacaaagaggaggaaaagt
gttctaagagcagagaaaagagtcagaggctcacttgttctcatagtcag
gagtcacaaaaatactgaattgatagctgtaatacatatgcagaggacct
ggtgtggacccatatcagccctacacttgcttcttcagtctctgtgagcc
tttatgcaccttgcttagttaatgcagagggccaagtttttctggtgtcc
tccatactctccaaccctagcaatcattttcctctacttctacaggattt
catgagcactgaggggatgaatttgaggggagagatttgatagagtcttt
gatgctctctctctctctctctctctctctctc

gaattcatttccatttgttagtgtcaagagctactaatgatggcctcaag
gcaggagctgggataggggttataaacagggtgctcaggagattacatgg
ggccctatatgatgttccaggttgctgactctgctatggttttaggctag
ttaaaactcagtgttcttgtggatcatcactaaatttacagaaaccattc
ttcagcgtgcatgagtgtgcatcagaattctccatggtgttagatgataa
ttcagtcccagtgctcagataggacaaagtttgaaaatgactgctttaaa
tattgaaatagctgaactatctcatgccacaggttagcgtttaaaaaaaa
atctgttcagttaaaatagaagaataaggatgggttctctctaggttctc
tctccaaatcaatactcactgaattgcattgtgagaagtcagtgattgta
ttttaaagttaattttgtttagttcttctctctagctaatccactgggcc
tttaagtcagagaccattatcttttgaaaattgttttgtcctataaattt
ccagctattatattcaaagcatactaatgtaaggattccaaccgatgaag
aaataaacaattggcagcaggtcagctaacatcctgtctaaaagtgaacc
ttactctaggtcagtcctgattttaaggttgccatggtaacatagcaatg
ggcatagtaacaggactgaaaatggtgtctaattttccaataaatcatgg
ttttcaaaatgttttctctctctcaaaaatatataaggtaggatttcaat
attaatagttactttaattttctctaagatgatttcatctattttcatta
ttattcaaaatcaatgagagaagaaaacttttgcaacctgattttattaa
ttctcacatttttagtacaaatttgttaattgggccaaatttgtggcatt
tctgtataaataggggtagataaaatatacgaagttgtaatgcaaactga
caggccacatgacaatgtgattggtcacactaaaaatttatcagatgtat
attaccttttacaaaggtgttttgaatatcattgaatatctgactctaga
tcatagcatggatagtatgaccaatggttctaattcctggctcctggaga
ttccctctctctggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52382761_52383318
seq2: B6Ng01-338F16.b_49_606 (reverse)

seq1  TCCACACCAGGTCCTCTGCATATGTATTACAGCTATCAATTCAGTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCAGGTCCTCTGCATATGTATTACAGCTATCAATTCAGTATTTT  50

seq1  TGTGACTCCTGACTATGAGAACAAGTGAGCCTCTGACTCTTTTCTCTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCCTGACTATGAGAACAAGTGAGCCTCTGACTCTTTTCTCTGCT  100

seq1  CTTAGAACACTTTTCCTCCTCTTTGTTTGCTGTGTTCAACTTTGAGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACACTTTTCCTCCTCTTTGTTTGCTGTGTTCAACTTTGAGGGGA  150

seq1  AATGTTTTTGCTTCATCTTACTATATTGTCATGTCTGGTTGCTGTCTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTTGCTTCATCTTACTATATTGTCATGTCTGGTTGCTGTCTCTT  200

seq1  AGAAACCTGCTCTTTTCTAATAAGACAGAAAGAAAGTGAACCTGCAGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGCTCTTTTCTAATAAGACAGAAAGAAAGTGAACCTGCAGGGA  250

seq1  AGGGGAGGTAAGGAGGAACTGGATGGAGTAGAGGGAGAGCTAACTATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGTAAGGAGGAACTGGATGGAGTAGAGGGAGAGCTAACTATAAT  300

seq1  CAGAACATAATTATAGAAAAGGAATCTATTTTTAATAAAATAATGCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATAATTATAGAAAAGGAATCTATTTTTAATAAAATAATGCACAT  350

seq1  GTATGTATACACACAACATGTAAACTAAAATACATGCTCACACACCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATACACACAACATGTAAACTAAAATACATGCTCACACACCAACA  400

seq1  TATGTACAAGCATGAATGCATACATATTTCAAATATATTATAGATCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACAAGCATGAATGCATACATATTTCAAATATATTATAGATCCCTC  450

seq1  AAAAGATCTTAGAACTGTGTCTATACTTCTAGGCATTTTGTCTTTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATCTTAGAACTGTGTCTATACTTCTAGGCATTTTGTCTTTGAGAA  500

seq1  TAATAAAATATTTTACATTTTAGACTCCCATTTCCTATATATCACCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATATTTTACATTTTAGACTCCCATTTCCTATATATCACCAAGA  550

seq1  TAGAATTC  558
      ||||||||
seq2  TAGAATTC  558


seq1: chr16_52269342_52270508
seq2: B6Ng01-338F16.g_70_1235

seq1  GAATTCATTTCCATTTGTTAGTGTCAAGAGCTACTAATGATGGCCTCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCATTTGTTAGTGTCAAGAGCTACTAATGATGGCCTCAAG  50

seq1  GCAGGAGCTGGGATAGGGGTTATAAACAGGGTGCTCAGGAGATTACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCTGGGATAGGGGTTATAAACAGGGTGCTCAGGAGATTACATGG  100

seq1  GGCCCTATATGATGTTCCAGGTTGCTGACTCTGCTATGGTTTTAGGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTATATGATGTTCCAGGTTGCTGACTCTGCTATGGTTTTAGGCTAG  150

seq1  TTAAAACTCAGTGTTCTTGTGGATCATCACTAAATTTACAGAAACCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTCAGTGTTCTTGTGGATCATCACTAAATTTACAGAAACCATTC  200

seq1  TTCAGCGTGCATGAGTGTGCATCAGAATTCTCCATGGTGTTAGATGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCGTGCATGAGTGTGCATCAGAATTCTCCATGGTGTTAGATGATAA  250

seq1  TTCAGTCCCAGTGCTCAGATAGGACAAAGTTTGAAAATGACTGCTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCCAGTGCTCAGATAGGACAAAGTTTGAAAATGACTGCTTTAAA  300

seq1  TATTGAAATAGCTGAACTATCTCATGCCACAGGTTAGCGTTTAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATAGCTGAACTATCTCATGCCACAGGTTAGCGTTTAAAAAAAA  350

seq1  ATCTGTTCAGTTAAAATAGAAGAATAAGGATGGGTTCTCTCTAGGTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCAGTTAAAATAGAAGAATAAGGATGGGTTCTCTCTAGGTTCTC  400

seq1  TCTCCAAATCAATACTCACTGAATTGCATTGTGAGAAGTCAGTGATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAATCAATACTCACTGAATTGCATTGTGAGAAGTCAGTGATTGTA  450

seq1  TTTTAAAGTTAATTTTGTTTAGTTCTTCTCTCTAGCTAATCCACTGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGTTAATTTTGTTTAGTTCTTCTCTCTAGCTAATCCACTGGGCC  500

seq1  TTTAAGTCAGAGACCATTATCTTTTGAAAATTGTTTTGTCCTATAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCAGAGACCATTATCTTTTGAAAATTGTTTTGTCCTATAAATTT  550

seq1  CCAGCTATTATATTCAAAGCATACTAATGTAAGGATTCCAACCGATGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATTATATTCAAAGCATACTAATGTAAGGATTCCAACCGATGAAG  600

seq1  AAATAAACAATTGGCAGCAGGTCAGCTAACATCCTGTCTAAAAGTGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACAATTGGCAGCAGGTCAGCTAACATCCTGTCTAAAAGTGAACC  650

seq1  TTACTCTAGGTCAGTCCTGATTTTAAGGTTGCCATGGTAACATAGCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTAGGTCAGTCCTGATTTTAAGGTTGCCATGGTAACATAGCAATG  700

seq1  GGCATAGTAACAGGACTGAAAATGGTGTCTAATTTTCCAATAAATCATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAGTAACAGGACTGAAAATGGTGTCTAATTTTCCAATAAATCATGG  750

seq1  TTTTCAAAATGTTTTCTCTCTCTCAAAAATATATAAGGTAGGATTTCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAATGTTTTCTCTCTCTCAAAAATATATAAGGTAGGATTTCAAT  800

seq1  ATTAATAGTTACTTTAATTTTCTCTAAGATGATTTCATCTATTTTCATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGTTACTTTAATTTTCTCTAAGATGATTTCATCTATTTTCATTA  850

seq1  TTATTCAAAATCAATGAGAGAAAGAAAACTTTTGCAACCTGATTTTATTA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTATTCAAAATCAATGAGAG-AAGAAAACTTTTGCAACCTGATTTTATTA  899

seq1  ATTCTCACATTTTTAGTACAAATTTGTTAATT-GGCCAAATTTGTGGCAT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTCTCACATTTTTAGTACAAATTTGTTAATTGGGCCAAATTTGTGGCAT  949

seq1  TTCTGTATAAAATAGGGGTAGAATAAAAATATAACGAAGTTGTAATGCAA  999
      |||||||| |||||||||||||   ||||||| |||||||||||||||||
seq2  TTCTGTAT-AAATAGGGGTAGA--TAAAATAT-ACGAAGTTGTAATGCAA  995

seq1  ACTGACAGGCCCACAATGACAATGTGGATTGGTCACACTAAAAATTTATC  1049
      ||||||||| |||| |||||||||| ||||||||||||||||||||||||
seq2  ACTGACAGG-CCAC-ATGACAATGT-GATTGGTCACACTAAAAATTTATC  1042

seq1  AGATGTATA-TACCTTTTACAAAAGTGTTTTAAAATAATCATTGAATTAT  1098
      ||||||||| ||||||||||||| ||||||| ||   ||||||||| |||
seq2  AGATGTATATTACCTTTTACAAAGGTGTTTTGAA--TATCATTGAA-TAT  1089

seq1  CTGACTCTAGATCCATAGTATGGATTAAGTATGACCAATTGGTTTCTTAT  1148
      |||||||||||| ||||| ||||||  ||||||||||||  | |||| ||
seq2  CTGACTCTAGAT-CATAGCATGGAT--AGTATGACCAAT--GGTTCTAAT  1134

seq1  TC---------------TCCCTTGCTCTCTGGAG  1167
      ||               |||||  ||||||||||
seq2  TCCTGGCTCCTGGAGATTCCCT--CTCTCTGGAG  1166


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