BAC Information

Click to search

BAC

Clone NameB6Ng01-338F22
Chromosome16 (Build37)
Map Location 91,739,052 - 91,837,997
singlet/doubletdoublet
Overlap geneItsn1
Upstream geneMrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653
Downstream geneAtp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F22.bB6Ng01-338F22.g
ACCGA122697GA122698
length6921,151
definitionB6Ng01-338F22.b B6Ng01-338F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,739,052 - 91,739,743)(91,836,844 - 91,837,997)
sequence
gaattctccttctttggtaagactggcaagtcaaagtttacatgcgagca
gaagtctatgtttggtgccttgcctgtttgtaatccctagaacggaaagg
tttaccagtgtttagttaacaggtgctgaaagtgttgtccgcttctgtgg
caaaagcttgtcactcactcacttgttgcaggtaaaatcagtttgctttt
taataaaggccaggaaaattcttagatagaaagatttaggactgcagttc
accatttttaactactttattcttcctttttttctaaaagaaattttgaa
gtgtgtgtgtgttgtgtgcacgtgtgtgcacagagcaaaggaggatgtga
actactctgtatcgctcttccacattattctcttttgtctgagtctcttg
ctgagcctagagctccactggtgaccagcaagctagtaaagttcctgttt
ctgttcccaacagtgctggggtcacaggcacactgaggcccacccgtctg
cttcttatgtggatttgaactcagctctttatgcttgcagagtaagtgcg
cttacctccatagccatagcccaagcctcaagtagagctgcttccataat
tgtgagcgttcttagctactcccagtcccaattttgttttgtttttttct
gtctgtctgcccgcccttcccttcccttcccttaccttccct
gaattccaaatagcacaaagccacaaagtacaaggtcgcaaacagattcc
cacagtgaccacagaacactacatggaaaaggtacaaaacaggcacaaac
agccaaacagaacagacagagtgattgtcttccaggcagtagcggcgatc
tccaccttttgtatccagtttaatttgcagttgcagtaaacaagagagga
ggcagagaggcgtttggggtgctctggggaagcttgtggcagtagactgg
gggctttgctttccagccttgcacttagaccatcactggtattaggaggc
tgtgaactggaaatctctttggtcattggcatgcaaatgaactaaccaag
tgtcccaattttcctgtctacttccattgtctacacaggagagcactggg
aaccaaccaaacacttcagggggcgtgtacgcgcatatgcagagatttaa
atgcgtctgtttgcccacacacattaaggaaggcaggcatctttcctggt
acagtaaccgtctgagaacagggcgaatgaatgccacaggccctgggctc
acaggctcactcacctctgagcgtcttccttttgcttctctaactccagg
ctcttcctctcctgctctttctgcttcagtcgcgctgcctccagggacct
ctgcttctggagttgctgtttgctatgtatctctctcagttcctagacgg
agtcaggatagtttatgggtggtcagagcagatggacactgaattgttca
cgaggatgcagcatttcacagtggccgagccctgggcgtttggcaggtga
ctttcagtgttgacagatgctcactcagaaatcgaactcgctgcattttg
acatgactgatcaccagtcattgtaccagattatattctagcgggccaca
cacaatatgtcatttcccaggacacttacttatccctggggctggggatt
gagtctgagaccttgcacacactaggcaagtgttctagactgagcttatg
cttccccccactcccaccccgctccaggattctgtttgaaaggccttgcc
ttgtgagggcagtggggggagacttcataagtactggaaagttactagtt
tatggatatggtgatttaataaataacatagctacttataataatcccat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91739052_91739743
seq2: B6Ng01-338F22.b_49_740

seq1  GAATTCTCCTTCTTTGGTAAGACTGGCAAGTCAAAGTTTACATGCGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCTTTGGTAAGACTGGCAAGTCAAAGTTTACATGCGAGCA  50

seq1  GAAGTCTATGTTTGGTGCCTTGCCTGTTTGTAATCCCTAGAACGGAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTATGTTTGGTGCCTTGCCTGTTTGTAATCCCTAGAACGGAAAGG  100

seq1  TTTACCAGTGTTTAGTTAACAGGTGCTGAAAGTGTTGTCCGCTTCTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAGTGTTTAGTTAACAGGTGCTGAAAGTGTTGTCCGCTTCTGTGG  150

seq1  CAAAAGCTTGTCACTCACTCACTTGTTGCAGGTAAAATCAGTTTGCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTGTCACTCACTCACTTGTTGCAGGTAAAATCAGTTTGCTTTT  200

seq1  TAATAAAGGCCAGGAAAATTCTTAGATAGAAAGATTTAGGACTGCAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGGCCAGGAAAATTCTTAGATAGAAAGATTTAGGACTGCAGTTC  250

seq1  ACCATTTTTAACTACTTTATTCTTCCTTTTTTTCTAAAAGAAATTTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTTAACTACTTTATTCTTCCTTTTTTTCTAAAAGAAATTTTGAA  300

seq1  GTGTGTGTGTGTTGTGTGCACGTGTGTGCACAGAGCAAAGGAGGATGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTGTGTGCACGTGTGTGCACAGAGCAAAGGAGGATGTGA  350

seq1  ACTACTCTGTATCGCTCTTCCACATTATTCTCTTTTGTCTGAGTCTCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTGTATCGCTCTTCCACATTATTCTCTTTTGTCTGAGTCTCTTG  400

seq1  CTGAGCCTAGAGCTCCACTGGTGACCAGCAAGCTAGTAAAGTTCCTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCTAGAGCTCCACTGGTGACCAGCAAGCTAGTAAAGTTCCTGTTT  450

seq1  CTGTTCCCAACAGTGCTGGGGTCACAGGCACACTGAGGCCCACCCGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCAACAGTGCTGGGGTCACAGGCACACTGAGGCCCACCCGTCTG  500

seq1  CTTCTTATGTGGATTTGAACTCAGCTCTTTATGCTTGCAGAGTAAGTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATGTGGATTTGAACTCAGCTCTTTATGCTTGCAGAGTAAGTGCG  550

seq1  CTTACCTCCATAGCCATAGCCCAAGCCTCAAGTAGAGCTGCTTCCATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCCATAGCCATAGCCCAAGCCTCAAGTAGAGCTGCTTCCATAAT  600

seq1  TGTGAGCGTTCTTAGCTACTCCCAGTCCCAATTTTGTTTTGTTTTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCGTTCTTAGCTACTCCCAGTCCCAATTTTGTTTTGTTTTTTTCT  650

seq1  GTCTGTCTGCCCGCCCTTCCCTTCCCTTCCCTTCCCTTCCCT  692
      ||||||||||||||||||||||||||||||||| ||||||||
seq2  GTCTGTCTGCCCGCCCTTCCCTTCCCTTCCCTTACCTTCCCT  692

seq1: chr16_91836844_91837997
seq2: B6Ng01-338F22.g_66_1216 (reverse)

seq1  GATGTGGATTAATTAT-AGTAGCTATAGTTTTATTTA-TAAATCACCATA  48
      |||| ||||| ||||| ||||||||   | ||||||| ||||||||||||
seq2  GATG-GGATT-ATTATAAGTAGCTA---TGTTATTTATTAAATCACCATA  45

seq1  TCATAAAACTAGTTACCTTCCAGTACTTATTGAGTCT-CCCCCACTGCCC  97
      ||   |||||||| || |||||||||||||  ||||| ||||||||| ||
seq2  TCCATAAACTAGTAACTTTCCAGTACTTATGAAGTCTCCCCCCACTG-CC  94

seq1  CTCACAAGCAAGGGCCTTTCAAACAG-ATCCTGGAGGCGGGGTGGGGGTG  146
      ||||||||  | |||||||||||||| |||||||| |||||||||| |||
seq2  CTCACAAGGCAAGGCCTTTCAAACAGAATCCTGGA-GCGGGGTGGGAGTG  143

seq1  GGGGG-AGCAT-AGCTCAGTCTTAGAACACTTGCCTAGTGTGTGCAAGGT  194
      ||||| ||||| ||||||||| ||||||||||||||||||||||||||||
seq2  GGGGGAAGCATAAGCTCAGTC-TAGAACACTTGCCTAGTGTGTGCAAGGT  192

seq1  CTCAGACTCAATCCCCAGCCCCAGGGATAAGTAAGTGTCCTGGGAAATGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTCAATCCCCAGCCCCAGGGATAAGTAAGTGTCCTGGGAAATGA  242

seq1  CATATTGTGTTGTGGCCCGCTAGAATATAATCTGGTACAATGACTGGTGA  294
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTG-TGTGGCCCGCTAGAATATAATCTGGTACAATGACTGGTGA  291

seq1  TCAGTCATGTCAAAATGCAGCGAGTTCGATTTCTGAGTGAGCATCTGTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATGTCAAAATGCAGCGAGTTCGATTTCTGAGTGAGCATCTGTCA  341

seq1  ACACTGAAAGTCACCTGCCAAACGCCCAGGGCTCGGCCACTGTGAAATGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAGTCACCTGCCAAACGCCCAGGGCTCGGCCACTGTGAAATGC  391

seq1  TGCATCCTCGTGAACAATTCAGTGTCCATCTGCTCTGACCACCCATAAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTCGTGAACAATTCAGTGTCCATCTGCTCTGACCACCCATAAAC  441

seq1  TATCCTGACTCCGTCTAGGAACTGAGAGAGATACATAGCAAACAGCAACT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGACTCCGTCTAGGAACTGAGAGAGATACATAGCAAACAGCAACT  491

seq1  CCAGAAGCAGAGGTCCCTGGAGGCAGCGCGACTGAAGCAGAAAGAGCAGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCAGAGGTCCCTGGAGGCAGCGCGACTGAAGCAGAAAGAGCAGG  541

seq1  AGAGGAAGAGCCTGGAGTTAGAGAAGCAAAAGGAAGACGCTCAGAGGTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAGAGCCTGGAGTTAGAGAAGCAAAAGGAAGACGCTCAGAGGTGA  591

seq1  GTGAGCCTGTGAGCCCAGGGCCTGTGGCATTCATTCGCCCTGTTCTCAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTGTGAGCCCAGGGCCTGTGGCATTCATTCGCCCTGTTCTCAGA  641

seq1  CGGTTACTGTACCAGGAAAGATGCCTGCCTTCCTTAATGTGTGTGGGCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTACTGTACCAGGAAAGATGCCTGCCTTCCTTAATGTGTGTGGGCAA  691

seq1  ACAGACGCATTTAAATCTCTGCATATGCGCGTACACGCCCCCTGAAGTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGCATTTAAATCTCTGCATATGCGCGTACACGCCCCCTGAAGTGT  741

seq1  TTGGTTGGTTCCCAGTGCTCTCCTGTGTAGACAATGGAAGTAGACAGGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGTTCCCAGTGCTCTCCTGTGTAGACAATGGAAGTAGACAGGAA  791

seq1  AATTGGGACACTTGGTTAGTTCATTTGCATGCCAATGACCAAAGAGATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGACACTTGGTTAGTTCATTTGCATGCCAATGACCAAAGAGATTT  841

seq1  CCAGTTCACAGCCTCCTAATACCAGTGATGGTCTAAGTGCAAGGCTGGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCACAGCCTCCTAATACCAGTGATGGTCTAAGTGCAAGGCTGGAA  891

seq1  AGCAAAGCCCCCAGTCTACTGCCACAAGCTTCCCCAGAGCACCCCAAACG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCCCCAGTCTACTGCCACAAGCTTCCCCAGAGCACCCCAAACG  941

seq1  CCTCTCTGCCTCCTCTCTTGTTTACTGCAACTGCAAATTAAACTGGATAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCCTCCTCTCTTGTTTACTGCAACTGCAAATTAAACTGGATAC  991

seq1  AAAAGGTGGAGATCGCCGCTACTGCCTGGAAGACAATCACTCTGTCTGTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTGGAGATCGCCGCTACTGCCTGGAAGACAATCACTCTGTCTGTT  1041

seq1  CTGTTTGGCTGTTTGTGCCTGTTTTGTACCTTTTCCATGTAGTGTTCTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCTGTTTGTGCCTGTTTTGTACCTTTTCCATGTAGTGTTCTGT  1091

seq1  GGTCACTGTGGGAATCTGTTTGCGACCTTGTACTTTGTGGCTTTGTGCTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTGTGGGAATCTGTTTGCGACCTTGTACTTTGTGGCTTTGTGCTA  1141

seq1  TTTGGAATTC  1154
      ||||||||||
seq2  TTTGGAATTC  1151