BAC Information

Click to search

BAC

Clone NameB6Ng01-338N20
Chromosome16 (Build37)
Map Location 18,088,659 - 18,215,185
singlet/doubletdoublet
Overlap geneProdh, Rtn4r
Upstream genePpil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6
Downstream geneEG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338N20.bB6Ng01-338N20.g
ACCGA123026GA123027
length1,1951,007
definitionB6Ng01-338N20.b B6Ng01-338N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,088,659 - 18,089,866)(18,214,180 - 18,215,185)
sequence
gaggttctagcctggatacgcacttcaatcttcacaaacttggagttgca
tggagggtaccctatatcacaggtgacgggggtattcctacaaatagtac
atgtcttagacactgtaatttatttctaatttgtagtgataataagtagg
aaacttcatgaggtccgaaaaagtacgcaggaaacggcccccttccttgc
ctgcccagcttcagaccatgcttgagtggccctgcccgacacttccgacc
tccgtcacccgctggccgcgccaatgtccgcgcgccactcctgcccacag
ggtcacccacccatccgcgcacctgctcgtggtgcgctagcagcaccggc
gacgcacacagccgcagcactagcaggttgcgcaccaactcccaactccg
ccggctgcgatacgcctcctgcgtgttggtgaagtccacggctggcacag
gcggccgcacagccttggccgccccacatccccgaagagcctcagggctc
gcgggaggctgttcctgggcttgcggtttggttgagagggcagcgacgcg
tggtgccaccgaccgcagcaagaagacgcgcttgagagccatggcggagc
cgatacacgcgctcaggaggcttaagtacactgggttagccacgccctgg
ggccacgccccgatcacgccccattcccggaagccccacctaccacccag
tggctccgctcccattttaagaagctttgtccagcacagaaagtagctcc
atctcctcccaagccttccctggcgctctggtttggcgtacttcccgttg
ctgaccccgcctccccagcccaaagacccagctcctccagagcccactgc
cagctctgccttccccgaccctcaagaccccgtcccttgggaaccgggct
ttttagctccgggattttcctgtccccaagctgaccaggtgggtccagag
ttcaccactcaatgccatgacagcctggcacacccgatttaggttcagag
cagcggggcctcgaaactgaggctaggctgtgagaattcttgttccgaag
tggcccactctctccctccccatcggtcacttcaccctgcttgagatttc
ttaagcttacctttcctgatgcttagacccgcttctgccctcggggagcc
aggatctcgattcactgtgaactcttggagctcttaggttccttc
gaattctgtccgacagctgccataatcagtactggagtccaagcttgtct
gcagccagttcctgcttcccagccacttgtatcccgagttagctgagtcc
cgctttcagtttgctgaagtcccttacagactaacggccggtctcctgtt
gtcttgcagacctggaatgaatacccatcaggggccactgaaacctgtgg
cggaggagctggtgtgcgctacaatgagagctccggtggggcccagctgg
cacacaagctggagtcctgcatttttccagtatgggatgcatctctacac
tcagtacagactgaggctggcagtcacactagaggagaggcctggaattg
ccccagcatgccctacggcactcagaagctgcccactctggtccctggag
gggcttctaagccctctgcctgttggtttctttctggggtttcatggtta
ccaggatatgatgatctcagaggtgggagcccaggaaggcccttggatgg
ctttggaatggggtggcttcagcaaaggccctgagtagctgacagtggtg
gtcgtggtgtctttgttctatattctgagtctccagacttggtaagggcc
cagtagatactcaggatgctgtcctgttagtaccacacaaaggctgcagg
ctaggatcctcaggtcacagctccaagtgctcagcgtgggctacagttac
tgagcagccgtggaaggactgagggcacttcaggtgctcatatgttctga
gaccttaggtgcctaccttaacccgaaacccaatgttctctgatcacctt
acctttgttggctgtgccctatctggaaaggctggtttctttcagacagc
cccgaagacgcctcccccttttccacggtccttgtatgctcttgatctcc
agagagtcctgagaggtggagggagtctagtaagagagagagcccaggtc
tgcgtgtagctggttccgcaatgagcatgagctgttgctagcatgttaaa
tacccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18088659_18089866
seq2: B6Ng01-338N20.b_54_1248

seq1  GAGGTTCTAGCCTGGATACGCACTTCAATCTTCACAAACTTGGAGTTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTAGCCTGGATACGCACTTCAATCTTCACAAACTTGGAGTTGCA  50

seq1  TGGAGGGTACCCTATATCACAGGTGACGGGGGTATTCCTACAAATAGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGTACCCTATATCACAGGTGACGGGGGTATTCCTACAAATAGTAC  100

seq1  ATGTCTTAGACACTGTAATTTATTTCTAATTTGTAGTGATAATAAGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTAGACACTGTAATTTATTTCTAATTTGTAGTGATAATAAGTAGG  150

seq1  AAACTTCATGAGGTCCGAAAAAGTACGCAGGAAACGGCCCCCTTCCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCATGAGGTCCGAAAAAGTACGCAGGAAACGGCCCCCTTCCTTGC  200

seq1  CTGCCCAGCTTCAGACCATGCTTGAGTGGCCCTGCCCGACACTTCCGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGCTTCAGACCATGCTTGAGTGGCCCTGCCCGACACTTCCGACC  250

seq1  TCCGTCACCCGCTGGCCGCGCCAATGTCCGCGCGCCACTCCTGCCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCACCCGCTGGCCGCGCCAATGTCCGCGCGCCACTCCTGCCCACAG  300

seq1  GGTCACCCACCCATCCGCGCACCTGCTCGTGGTGCGCTAGCAGCACCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCCACCCATCCGCGCACCTGCTCGTGGTGCGCTAGCAGCACCGGC  350

seq1  GACGCACACAGCCGCAGCACTAGCAGGTTGCGCACCAACTCCCAACTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACACAGCCGCAGCACTAGCAGGTTGCGCACCAACTCCCAACTCCG  400

seq1  CCGGCTGCGATACGCCTCCTGCGTGTTGGTGAAGTCCACGGCTGGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTGCGATACGCCTCCTGCGTGTTGGTGAAGTCCACGGCTGGCACAG  450

seq1  GCGGCCGCACAGCCTTGGCCGCCCCACATCCCCGAAGAGCCTCAGGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCGCACAGCCTTGGCCGCCCCACATCCCCGAAGAGCCTCAGGGCTC  500

seq1  GCGGGAGGCTGTTCCTGGGCTTGCGGTTTGGTTGAGAGGGCAGCGACGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGGCTGTTCCTGGGCTTGCGGTTTGGTTGAGAGGGCAGCGACGCG  550

seq1  TGGTGCCACCGACCGCAGCAAGAAGACGCGCTTGAGAGCCATGGCGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCACCGACCGCAGCAAGAAGACGCGCTTGAGAGCCATGGCGGAGC  600

seq1  CGATACACGCGCTCAGGAGGCTTAAGTACACTGGGTTAGCCACGCCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATACACGCGCTCAGGAGGCTTAAGTACACTGGGTTAGCCACGCCCTGG  650

seq1  GGCCACGCCCCGATCACGCCCCATTCCCGGAAGCCCCACCTACCACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGCCCCGATCACGCCCCATTCCCGGAAGCCCCACCTACCACCCAG  700

seq1  TGGCTCCGCTCCCATTTTAAGAAGCTTTGTCCAGCACAGAAAGTAGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCGCTCCCATTTTAAGAAGCTTTGTCCAGCACAGAAAGTAGCTCC  750

seq1  ATCTCCTCCCAAGCCTTCCCTGGCGCTCTGGTTTGGCGTACTTCCCGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTCCCAAGCCTTCCCTGGCGCTCTGGTTTGGCGTACTTCCCGTTG  800

seq1  CTGACCCCGCCTCCCCAGCCCAAAGACCCAGCTCCTCCAGAGCCCACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCGCCTCCCCAGCCCAAAGACCCAGCTCCTCCAGAGCCCACTGC  850

seq1  CAGCTCTGCCTTCCCCGACCCTCAAGACCCCGTCCCTTGGGAACCGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGCCTTCCCCGACCCTCAAGACCCCGTCCCTTGGGAACCGGGCT  900

seq1  TTTTAGCTCCGGGATTTTCCTGTCCCCAAGCTGACCAGGTGGGTCCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTCCGGGATTTTCCTGTCCCCAAGCTGACCAGGTGGGTCCAGAG  950

seq1  TTCACCACTCAATGCCATGACAGCCTGGCACACCCGGATTTTAGGTTCCA  1000
      ||||||||||||||||||||||||||||||||||||   |||||||| ||
seq2  TTCACCACTCAATGCCATGACAGCCTGGCACACCCG--ATTTAGGTT-CA  997

seq1  GAGCAGCGGGGCCTCGAAACTGAGGCTAGGCCTGTGAGAATTC-TGTCCC  1049
      |||||||||||||||||||||||||||||| |||||||||||| ||| ||
seq2  GAGCAGCGGGGCCTCGAAACTGAGGCTAGG-CTGTGAGAATTCTTGTTCC  1046

seq1  GAAAGGTGGCCCACTCTCTCCCTCCCCATC-GTCACTCCACCCCTGCCTG  1098
      |||  ||||||||||||||||||||||||| |||||| || |||||| ||
seq2  GAA--GTGGCCCACTCTCTCCCTCCCCATCGGTCACTTCA-CCCTGCTTG  1093

seq1  AAGTATCCTTAAAGCTACCCTTTCCTGTTGCTTTAGACCCGCTTTCTGCC  1148
      |  | ||  | |||||  ||||||||| ||| |||||||||| |||||||
seq2  AGATTTC--TTAAGCTTACCTTTCCTGATGC-TTAGACCCGC-TTCTGCC  1139

seq1  CTCGGGGGAAGCAAGAGATCCTCGATTCCACTGTGAACTCTTGGAGCTC-  1197
      |||||||  ||| || ||| ||||||| ||||||||||||||||||||| 
seq2  CTCGGGG--AGCCAG-GAT-CTCGATT-CACTGTGAACTCTTGGAGCTCT  1184

seq1  TAGGTTCCTTC  1208
      |||||||||||
seq2  TAGGTTCCTTC  1195

seq1: chr16_18214180_18215185
seq2: B6Ng01-338N20.g_65_1071 (reverse)

seq1  TAGGGTATTTAACATGCTAGC-ACAGCTCATGCTCA-TGCGGAACCAGCT  48
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  TAGGGTATTTAACATGCTAGCAACAGCTCATGCTCATTGCGGAACCAGCT  50

seq1  ACACGGCAGACCTGGGGCTCTTCTCTCCTACTAGACTCCCT-CACCTCTC  97
      |||| |||||||| |||||| |||||| ||||||||||||| ||||||||
seq2  ACAC-GCAGACCT-GGGCTC-TCTCTCTTACTAGACTCCCTCCACCTCTC  97

seq1  AGGACTCTCTGGAGATCAAGAGCATACAAGGACCGTGGAAAAGGGGGAGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTCTGGAGATCAAGAGCATACAAGGACCGTGGAAAAGGGGGAGG  147

seq1  CGTCTTCGGGGCTGTCTGAAAGAAACCAGCC-TTCCAGATAGGGCACAGC  196
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  CGTCTTCGGGGCTGTCTGAAAGAAACCAGCCTTTCCAGATAGGGCACAG-  196

seq1  CCAACAAAGGTAAGGTGATCAGAGAACATTGGGTTTCGGGTTAAGGTAGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAGGTAAGGTGATCAGAGAACATTGGGTTTCGGGTTAAGGTAGG  246

seq1  CACCTAAGGTCTCAGAACATATGAGCACCTGAAGTGCCCTCAGTCCTTCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAGGTCTCAGAACATATGAGCACCTGAAGTGCCCTCAGTCCTTCC  296

seq1  ACGGCTGCTCAGTAACTGTAGCCCACGCTGAGCACTTGGAGCTGTGACCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTGCTCAGTAACTGTAGCCCACGCTGAGCACTTGGAGCTGTGACCT  346

seq1  GAGGATCCTAGCCTGCAGCCTTTGTGTGGTACTAACAGGACAGCATCCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCTAGCCTGCAGCCTTTGTGTGGTACTAACAGGACAGCATCCTG  396

seq1  AGTATCTACTGGGCCCTTACCAAGTCTGGAGACTCAGAATATAGAACAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTACTGGGCCCTTACCAAGTCTGGAGACTCAGAATATAGAACAAA  446

seq1  GACACCACGACCACCACTGTCAGCTACTCAGGGCCTTTGCTGAAGCCACC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACGACCACCACTGTCAGCTACTCAGGGCCTTTGCTGAAGCCACC  496

seq1  CCATTCCAAAGCCATCCAAGGGCCTTCCTGGGCTCCCACCTCTGAGATCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCAAAGCCATCCAAGGGCCTTCCTGGGCTCCCACCTCTGAGATCA  546

seq1  TCATATCCTGGTAACCATGAAACCCCAGAAAGAAACCAACAGGCAGAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCCTGGTAACCATGAAACCCCAGAAAGAAACCAACAGGCAGAGGG  596

seq1  CTTAGAAGCCCCTCCAGGGACCAGAGTGGGCAGCTTCTGAGTGCCGTAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAGCCCCTCCAGGGACCAGAGTGGGCAGCTTCTGAGTGCCGTAGG  646

seq1  GCATGCTGGGGCAATTCCAGGCCTCTCCTCTAGTGTGACTGCCAGCCTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGGGGCAATTCCAGGCCTCTCCTCTAGTGTGACTGCCAGCCTCA  696

seq1  GTCTGTACTGAGTGTAGAGATGCATCCCATACTGGAAAAATGCAGGACTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTACTGAGTGTAGAGATGCATCCCATACTGGAAAAATGCAGGACTC  746

seq1  CAGCTTGTGTGCCAGCTGGGCCCCACCGGAGCTCTCATTGTAGCGCACAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTGTGCCAGCTGGGCCCCACCGGAGCTCTCATTGTAGCGCACAC  796

seq1  CAGCTCCTCCGCCACAGGTTTCAGTGGCCCCTGATGGGTATTCATTCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTCCGCCACAGGTTTCAGTGGCCCCTGATGGGTATTCATTCCAG  846

seq1  GTCTGCAAGACAACAGGAGACCGGCCGTTAGTCTGTAAGGGACTTCAGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAAGACAACAGGAGACCGGCCGTTAGTCTGTAAGGGACTTCAGCA  896

seq1  AACTGAAAGCGGGACTCAGCTAACTCGGGATACAAGTGGCTGGGAAGCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGCGGGACTCAGCTAACTCGGGATACAAGTGGCTGGGAAGCAG  946

seq1  GAACTGGCTGCAGACAAGCTTGGACTCCAGTACTGATTATGGCAGCTGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGCTGCAGACAAGCTTGGACTCCAGTACTGATTATGGCAGCTGTC  996

seq1  -AACAGAATTC  1006
        |||||||||
seq2  GGACAGAATTC  1007