BAC Information

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BAC

Clone NameB6Ng01-339A19
Chromosome16 (Build37)
Map Location 59,496,621 - 59,497,760
singlet/doubletsinglet
Overlap geneBC043118
Upstream geneSt3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15, Cldnd1, Olfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina
Downstream geneLOC672884, Arl6, Epha6, LOC100043804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339A19.bB6Ng01-339A19.g
ACCGA123153GA123154
length1,1301,164
definitionB6Ng01-339A19.b B6Ng01-339A19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagttttgaaaacagtagtttgttactccatgtaaatttggta
caggactggtgctgctctaattctttcccttgttgaggaaccaggaaata
atcaaaacatgatcctccttgaggctgggaatacagagtcactaaggcac
ttataatgcatgtcagtgatttctaagtgtaattacagagccatcagact
acaaatggcaataagggtaattagtaccttgcttggtcttattgattaaa
actgtgctatttagtactaaagtaactggagttctgtcattcatgaaggt
catgcctgtttctttgtatatgcaaggtaatacaactataaaagttcact
gaagtgtagagaattagtaattgttatttcgggagatgacactgagttgt
ggatacttatgtacattattattacagttataactactgatgccagagtt
aagagtaaaagcctgggtactggcagcccaacaagctagtctcaatctca
tgtcttcaatacactaatggaagaagtagtaagaggagagacagatctat
tcaatgtaccacactcagaataaataacggatcccactgaaaccacccat
cccacccacccagtcttggagacaacgatatgagaagtgtaagttttgag
ggctagagatatgcagaaaacagcagtccttgtcaaggtttggttcccag
gattgatggtggacaaatctgatctgcgtggtggtctggtaagttgtcag
aactatacaatctcttgttgagaggcagttcttcctctggctggcaaagg
ggcttcagctttccccttctctctgcatgggattcctgtggaaatttcaa
ttctttcagatgtcaatagctaaagggatggtcacatgatgatatcttgt
tctaccaggatggttatagacattgatgtggaagtagttcatttttttta
gacactaagcatcttgttcctgggtttttacagcaagttatttgccttct
acttggtaatttaatactaagtgatgttttctttagacatgctcaacaca
gtaagcagttaacgaagcactaacctttggtgtgagtgtgtggtatttcc
aactcacacagttcttgttagtcttgccat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggatacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaacgaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacctatgcccctccttagatttgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgccatatccagggatccaccccataatca
gcttccaaacggtgacaccattgcatacactagcaagattttattgaaag
gacccagatgtagctgtctcttgtgagactatgccggggcctagcaaaca
cagaagtgggatgctcacagtcagctaatggatggatcatagggcctcca
atgggaggagctagagaagtagccaaggagctaaagggatctgcaaccta
taggtggaacaacattatgaactaccagtacccggagctctgactcttag
ctgcatatatatcaaaagaatgccttagtcgtcaattcacttgaacagaa
gtcaagtgtactggcacctaatggctcagtaccaggaacacaaggcccaa
aaaaggggggcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_59496621_59497760
seq2: B6Ng01-339A19.b_43_1172 (reverse)

seq1  ATGGCAAGACTAACAAGAA-TGTTGTAGTTTGAAAATTACCACACA-TCA  48
      ||||||||||||||||||| |||   |||| ||||  ||||||||| |||
seq2  ATGGCAAGACTAACAAGAACTGTGTGAGTTGGAAA--TACCACACACTCA  48

seq1  ACACAAAGGTAGGTTGCCTTTTGGTAAACTGC-TACTGTGTTGAGCATGT  97
         |||||||  | |||   || || |||||| |||||||||||||||||
seq2  CACCAAAGGTTAG-TGC---TTCGTTAACTGCTTACTGTGTTGAGCATGT  94

seq1  CTAAAG-AAACATCACTTAAGTATTTAAATTACCAAGTAGAAGGGCAAAT  146
      |||||| ||||||||||| |||| |||||||||||||||||| |||||||
seq2  CTAAAGAAAACATCACTT-AGTA-TTAAATTACCAAGTAGAA-GGCAAAT  141

seq1  AACTTGGCTGTAAAAACCCAGGAACAAGATTGCTTAGTGTCTTAAAAAAA  196
      ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
seq2  AACTT-GCTGTAAAAACCCAGGAACAAGA-TGCTTAGTGTC-TAAAAAAA  188

seq1  ATGAACTACTTCCACATTCAATGTCTATAACCATCCTGGTAGAACAAGAT  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGAACTACTTCCACA-TCAATGTCTATAACCATCCTGGTAGAACAAGAT  237

seq1  ATCATCATGTGACCATCCCTTTAGCTATTGACATCCTGAAAGAATTGAAA  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATCATCATGTGACCATCCCTTTAGCTATTGACAT-CTGAAAGAATTGAAA  286

seq1  TTTCCACAGGAATCCCATGCAGAGAGAAGGGGAAAGCTGAAGCCCCTTTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACAGGAATCCCATGCAGAGAGAAGGGGAAAGCTGAAGCCCCTTTG  336

seq1  CCAGCCAGAGGAAGAACTGCCTCTCAACAAGAGATTGTATAGTTCTGACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGAGGAAGAACTGCCTCTCAACAAGAGATTGTATAGTTCTGACA  386

seq1  ACTTACCAGACCACCACGCAGATCAGATTTGTCCACCATCAATCCTGGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCAGACCACCACGCAGATCAGATTTGTCCACCATCAATCCTGGGA  436

seq1  ACCAAACCTTGACAAGGACTGCTGTTTTCTGCATATCTCTAGCCCTCAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCTTGACAAGGACTGCTGTTTTCTGCATATCTCTAGCCCTCAAA  486

seq1  ACTTACACTTCTCATATCGTTGTCTCCAAGACTGGGTGGGTGGGATGGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACACTTCTCATATCGTTGTCTCCAAGACTGGGTGGGTGGGATGGGT  536

seq1  GGTTTCAGTGGGATCCGTTATTTATTCTGAGTGTGGTACATTGAATAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAGTGGGATCCGTTATTTATTCTGAGTGTGGTACATTGAATAGAT  586

seq1  CTGTCTCTCCTCTTACTACTTCTTCCATTAGTGTATTGAAGACATGAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCCTCTTACTACTTCTTCCATTAGTGTATTGAAGACATGAGAT  636

seq1  TGAGACTAGCTTGTTGGGCTGCCAGTACCCAGGCTTTTACTCTTAACTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTAGCTTGTTGGGCTGCCAGTACCCAGGCTTTTACTCTTAACTCT  686

seq1  GGCATCAGTAGTTATAACTGTAATAATAATGTACATAAGTATCCACAACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGTAGTTATAACTGTAATAATAATGTACATAAGTATCCACAACT  736

seq1  CAGTGTCATCTCCCGAAATAACAATTACTAATTCTCTACACTTCAGTGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCATCTCCCGAAATAACAATTACTAATTCTCTACACTTCAGTGAA  786

seq1  CTTTTATAGTTGTATTACCTTGCATATACAAAGAAACAGGCATGACCTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAGTTGTATTACCTTGCATATACAAAGAAACAGGCATGACCTTC  836

seq1  ATGAATGACAGAACTCCAGTTACTTTAGTACTAAATAGCACAGTTTTAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACAGAACTCCAGTTACTTTAGTACTAAATAGCACAGTTTTAAT  886

seq1  CAATAAGACCAAGCAAGGTACTAATTACCCTTATTGCCATTTGTAGTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGACCAAGCAAGGTACTAATTACCCTTATTGCCATTTGTAGTCTG  936

seq1  ATGGCTCTGTAATTACACTTAGAAATCACTGACATGCATTATAAGTGCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTGTAATTACACTTAGAAATCACTGACATGCATTATAAGTGCCT  986

seq1  TAGTGACTCTGTATTCCCAGCCTCAAGGAGGATCATGTTTTGATTATTTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTCTGTATTCCCAGCCTCAAGGAGGATCATGTTTTGATTATTTC  1036

seq1  CTGGTTCCTCAACAAGGGAAAGAATTAGAGCAGCACCAGTCCTGTACCAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCCTCAACAAGGGAAAGAATTAGAGCAGCACCAGTCCTGTACCAA  1086

seq1  ATTTACATGGAGTAACAAACTACTGTTTTCAAAACTGAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATGGAGTAACAAACTACTGTTTTCAAAACTGAGAATTC  1130