BAC Information

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BAC

Clone NameB6Ng01-339B09
Chromosome16 (Build37)
Map Location 75,701,923 - 75,703,012
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665042, D930038D03Rik, Rbm11
Downstream geneStch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B09.bB6Ng01-339B09.g
ACCGA123180GA123181
length1,0981,088
definitionB6Ng01-339B09.b B6Ng01-339B09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcgagttttacagtctctgtgcagaacagaaaactgtcaactc
ggtgaagagactgcccacgacatggaagaaatgacaggtatacatttgac
agaaaattaggccctaagttatctaaagaactcagaaattaaatatcaat
aaaacaagccagttaataaacatgagctataggtctagagaactgggtca
gcaggtgagagaaagggctgctgtaccagaggacctgagtttgagtcaca
gcaccctcacacctatctataactacagctccaagggatctgacttcttg
catgtgtgtggtgcatatacattcatgcagagaaacacccatatagcaaa
aataaaatattttctaaattgacatatggaacagaacagaacaaaaagtt
ctcaagttctcaaaaaagaaacacaaatgaccaagcaatatctttcaaag
catatatcatctttcaccatcatgaaaattcagattaaaactattttaaa
gtttcttcttatctcagtcagactagctaaggccaagacaattaattggt
tatccaataccatatggtcagttctgataatgtatacatacaactaacat
tatttgactgagcaggttgtatttatacagttagggggaaatatatatgc
atacatttgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaataacaaa
gaaaaaaaaagccataaacttaaaagagagatggtaggtatatgggagca
gttaggaaggggtaaggaaatgaaaaaaatatgtaattgtattttaatct
aacttcttaaaattatatgttaaagaaagaaaacaaacgacaagaaatgc
tggtctgggtgtagggaaagaggaagacttattccatgttggtgggagtg
aaaatgcatacaaccacctatagaaatcattatggggaatcctcaaaaat
gatagtagagggctatgatatatcctcagctatacatcgatggcatacat
gtaaaggctgatattcctacttcagaagactggcttggcccatgttcaat
tgctaccggatcgaaatattctaggcaatttacacaacttggggacct

gaattctttcccaacttacttaagaattctttcccctacccaagctccat
gtctctccatgatgactctggatttcaggcaagtcatttatcctctttgg
gtggtaatttcccttctgcaaactgtgaatatgtttgtctattctctttg
ccttttgagctcattttgctccactgtttgtacaatgcatgtggaagtac
accagacatcacaaatatttaaatttaaatattattagagccatgggaag
gaagcctgaagcatctccaaaaggaaatgtcattttctaagcagtgcccc
cccaacaaccagtattttaccaaattaatggcactaaattgcattctttc
ttatagagggtgaactgcgtgattgtttctagaattaaaaagagtcatgc
ctaaaattcatacatgagccatcaaaaatctaaatacaaatccttttaca
taatatgcctgaaagctgaatgtttaggaatttgtgcattgtaacttagg
gataaagaatatacctagctttggagcatttgtcttacaaacaaatttac
taacaaatagttgaatgtatagcccagcttgttgtaggtgtggacccttg
gtttgtgtgacactaaacattcagtgtctccatcttttagctgtagagta
aggaagactgggaaatttctaataggataggtttgtaaataaggagttaa
tttatgaatatagttaactacatgatgttagactggtttggaggggatgt
cattctgatttttatgatcttcataatagtaacttcacatacatgtgaaa
cttggcacatatgtatgtttggatgaaggaatacacgttccatcacatac
atgtggtaatgagagaacaactattgggaactggttttgtctttccatga
taatttcacagaatcaattcaggataccaggcatccaccaagcatgtctc
actactgagtcattttacagttttattattattgttttaagctacagtcc
tggatttttttatgacagtatgtggttctttctaagaaagaaatatcact
tgtatatcctaaatcagaatttatctctatgccgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75701923_75703012
seq2: B6Ng01-339B09.g_68_1155

seq1  GAATTCTTTCCCAACTTACTTAAGAATTCTTTCCCCTACCCAAGCTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCAACTTACTTAAGAATTCTTTCCCCTACCCAAGCTCCAT  50

seq1  GTCTCTCCATGATGACTCTGGATTTCAGGCAAGTCATTTATCCTCTTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCATGATGACTCTGGATTTCAGGCAAGTCATTTATCCTCTTTGG  100

seq1  GTGGTAATTTCCCTTCTGCAAACTGTGAATATGTTTGTCTATTCTCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAATTTCCCTTCTGCAAACTGTGAATATGTTTGTCTATTCTCTTTG  150

seq1  CCTTTTGAGCTCATTTTGCTCCACTGTTTGTACAATGCATGTGGAAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGAGCTCATTTTGCTCCACTGTTTGTACAATGCATGTGGAAGTAC  200

seq1  ACCAGACATCACAAATATTTAAATTTAAATATTATTAGAGCCATGGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACATCACAAATATTTAAATTTAAATATTATTAGAGCCATGGGAAG  250

seq1  GAAGCCTGAAGCATCTCCAAAAGGAAATGTCATTTTCTAAGCAGTGCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTGAAGCATCTCCAAAAGGAAATGTCATTTTCTAAGCAGTGCCCC  300

seq1  CCCAACAACCAGTATTTTACCAAATTAATGGCACTAAATTGCATTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAACCAGTATTTTACCAAATTAATGGCACTAAATTGCATTCTTTC  350

seq1  TTATAGAGGGTGAACTGCGTGATTGTTTCTAGAATTAAAAAGAGTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAGGGTGAACTGCGTGATTGTTTCTAGAATTAAAAAGAGTCATGC  400

seq1  CTAAAATTCATACATGAGCCATCAAAAATCTAAATACAAATCCTTTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTCATACATGAGCCATCAAAAATCTAAATACAAATCCTTTTACA  450

seq1  TAATATGCCTGAAAGCTGAATGTTTAGGAATTTGTGCATTGTAACTTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCCTGAAAGCTGAATGTTTAGGAATTTGTGCATTGTAACTTAGG  500

seq1  GATAAAGAATATACCTAGCTTTGGAGCATTTGTCTTACAAACAAATTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAATATACCTAGCTTTGGAGCATTTGTCTTACAAACAAATTTAC  550

seq1  TAACAAATAGTTGAATGTATAGCCCAGCTTGTTGTAGGTGTGGACCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATAGTTGAATGTATAGCCCAGCTTGTTGTAGGTGTGGACCCTTG  600

seq1  GTTTGTGTGACACTAAACATTCAGTGTCTCCATCTTTTAGCTGTAGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGACACTAAACATTCAGTGTCTCCATCTTTTAGCTGTAGAGTA  650

seq1  AGGAAGACTGGGAAATTTCTAATAGGATAGGTTTGTAAATAAGGAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACTGGGAAATTTCTAATAGGATAGGTTTGTAAATAAGGAGTTAA  700

seq1  TTTATGAATATAGTTAACTACATGATGTTAGACTGGTTTGGAGGGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAATATAGTTAACTACATGATGTTAGACTGGTTTGGAGGGGATGT  750

seq1  CATTCTGATTTTTATGATCTTCATAATAGTAACTTCACATACATGTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGATTTTTATGATCTTCATAATAGTAACTTCACATACATGTGAAA  800

seq1  CTTGGCACATATGTATGTTTGGATGAAGGAATACACGTTCCATCACATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCACATATGTATGTTTGGATGAAGGAATACACGTTCCATCACATAC  850

seq1  ATGTGGTAATGAGAGAACAACTATTGGGAACTGGTTTTGTCTTTCCATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTAATGAGAGAACAACTATTGGGAACTGGTTTTGTCTTTCCATGA  900

seq1  TAATTTCACAGAATCAAATTCAGGATACCAGGCATCCACCAAAGCATGTC  950
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TAATTTCACAGAATC-AATTCAGGATACCAGGCATCCACC-AAGCATGTC  948

seq1  TCACTACTGAGTCATTTTAACAGTTTTA-TATTATTGTTTTTAAGGCTAC  999
      |||||||||||||||||| ||||||||| ||||||||||||  | |||||
seq2  TCACTACTGAGTCATTTT-ACAGTTTTATTATTATTGTTTT--AAGCTAC  995

seq1  AGTCCTGG-TTTTTTATTGACCAGTATGTGG-TCTTTCTAAGAAAG-AAT  1046
      |||||||| ||||||  ||| |||||||||| |||||||||||||| |||
seq2  AGTCCTGGATTTTTTTATGA-CAGTATGTGGTTCTTTCTAAGAAAGAAAT  1044

seq1  ATCACTGTAATATCCT-AATCAGAATTTATTCTCTATGGCGTTTT  1090
      ||||||   ||||||| |||||||||||| |||||||| ||||||
seq2  ATCACTTGTATATCCTAAATCAGAATTTA-TCTCTATGCCGTTTT  1088


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