BAC Information

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BAC

Clone NameB6Ng01-339H01
Chromosome16 (Build37)
Map Location 77,679,389 - 77,830,287
singlet/doubletdoublet
Overlap genenone
Upstream gene1700063K16Rik, LOC665120, Usp25, 2810055G20Rik
Downstream geneLOC435483, LOC100039561, Cxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339H01.bB6Ng01-339H01.g
ACCGA123436GA123437
length1,0841,194
definitionB6Ng01-339H01.b B6Ng01-339H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,679,389 - 77,680,473)(77,829,129 - 77,830,287)
sequence
gaattcctaattttgaaatattggaacctaacctatttttccaagctgtt
ttcagttgggcgctctgacaaattcttgtctgccctcaacccaaagcaaa
attagactcgccaatctcctgactgctggttacaaaccatgaaaccttat
tgcaactctgtaagtgcctttggatcattttgatgtagtcccctgagtcc
caaagaaagctgtctcccaggccacattttatgtagccagaaaatgcctc
tcttgtattgacttgctaaggcccatggccaccacataacgaatctgagg
ctttggtcttccataactctcttgtgcttttattcttggctccagtctga
aggtgcatgaagggctttagaaaataaatcctgggtctcaaccaaaagaa
atctgtgtctaattggtctggtgaatagccagatcattaggatcttttaa
agatatcatcatatgatcatactatgtggctgagatttagaataatgtta
acggttatttacaggtgaatctactaaaagtgagaagaacaatataataa
taataataataataataataataataataatgataataactgataacaaa
aatgaagtgaatgtatgtgtttcatgcccaaggagtgttagcacaagaaa
aagatagtttccctccattaatgcatacttgtgtcattctacctatttgg
caattaaaaggtgatggtgaaatcgctctatgcctttgtgataatcttgt
tggtaacatgtgcttacaagaaacgttcataataatggcaaaggcttcag
tttttcattcttaattttctttttcatgttttaggccacgatttcctaac
tcagaatctgtaagagagattccaagaacttggtaagagataggaacaca
gtggggcctaaacagaggacagtttctgtaatcacttgtaatatctataa
tgttatactagatgaatggaaatatgagcattgttgaagttgtaatgttt
caaagtttaacaatgatttttatatttaaatataagctatatgacaaata
tggtgattatactgtatatgaagagtaaattaaa

gaattcacttatgtgtggaatctaaaacacttccctcagaagtagagact
aaagtgaggattgtcaaaatctgcatctccacggatggagagaagagaca
caatgaccactaggcacaaatattcagttcagtgggaggtactaattctg
gtgttctgtgggcatagcattcacatattcagttcatagcaaactatttt
acatttcaaaatggataataaaagggttatcaatgctcttacacaaggag
atgatgttgtatttgatggatttgctgtgagctctcaatttgattacttc
acaaggttcaaattaactaaaatattaaattgtgccctatacatttcaaa
caactatcatataccaattaaaataaggtaagataataaaaatatacata
acttgcattttatgtatcctttataggatatataaatctctaataacata
tagaaattattcacttttatttaaagcaataaatatagagaatgttgtta
gtaactcttaaagtagcttagctaaaacttatttcctttagtattatttc
ctgaaaactgttggaaatacatttgtaaatttaacaacaggaaaatataa
caagaaaaattgtacatctgggtaacgatttttcatcaccatttttataa
ggccaatttttacatttccatccatgttcaccagtgttccaaagtggagg
gcagtcctgtactcccttccagagagcaccattaatgtttgcagatactg
ctttattatcgtagtaaataagagaaattataaggtgggtgtggctggtc
tttcataggtggagaccagaagccaaacatttacttcatgcagctaaaaa
gaggcctctggccatattgggtgaaaaaccatgaagcctcttttacattc
attgtaggaaaaattatacttactcctttgacatagtttcttacctgaag
aacccagataatactgctctgagcatataacccaaccacagggcaatgtc
ctcctactatgtgtccatagccaggcctttatttcataggtaacccagaa
actggatatataacttcagaaatttcctctaaaattgaagaatgggaata
caagaaaatgtggctttcaattttatacattggcaatgcctatcaagcta
ttttaattgaaggacctttgatctgcagcaaatggcaatggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_77679389_77680473
seq2: B6Ng01-339H01.b_45_1128

seq1  GAATTCCTAATTTTGAAATATTGGAACCTAACCTATTTTTCCAAGCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTTTGAAATATTGGAACCTAACCTATTTTTCCAAGCTGTT  50

seq1  TTCAGTTGGGCGCTCTGACAAATTCTTGTCTGCCCTCAACCCAAAGCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGGGCGCTCTGACAAATTCTTGTCTGCCCTCAACCCAAAGCAAA  100

seq1  ATTAGACTCGCCAATCTCCTGACTGCTGGTTACAAACCATGAAACCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACTCGCCAATCTCCTGACTGCTGGTTACAAACCATGAAACCTTAT  150

seq1  TGCAACTCTGTAAGTGCCTTTGGATCATTTTGATGTAGTCCCCTGAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCTGTAAGTGCCTTTGGATCATTTTGATGTAGTCCCCTGAGTCC  200

seq1  CAAAGAAAGCTGTCTCCCAGGCCACATTTTATGTAGCCAGAAAATGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAGCTGTCTCCCAGGCCACATTTTATGTAGCCAGAAAATGCCTC  250

seq1  TCTTGTATTGACTTGCTAAGGCCCATGGCCACCACATAACGAATCTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATTGACTTGCTAAGGCCCATGGCCACCACATAACGAATCTGAGG  300

seq1  CTTTGGTCTTCCATAACTCTCTTGTGCTTTTATTCTTGGCTCCAGTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCTTCCATAACTCTCTTGTGCTTTTATTCTTGGCTCCAGTCTGA  350

seq1  AGGTGCATGAAGGGCTTTAGAAAATAAATCCTGGGTCTCAACCAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATGAAGGGCTTTAGAAAATAAATCCTGGGTCTCAACCAAAAGAA  400

seq1  ATCTGTGTCTAATTGGTCTGGTGAATAGCCAGATCATTAGGATCTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTCTAATTGGTCTGGTGAATAGCCAGATCATTAGGATCTTTTAA  450

seq1  AGATATCATCATATGATCATACTATGTGGCTGAGATTTAGAATAATGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATCATCATATGATCATACTATGTGGCTGAGATTTAGAATAATGTTA  500

seq1  ACGGTTATTTACAGGTGAATCTACTAAAAGTGAGAAGAACAATATAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTATTTACAGGTGAATCTACTAAAAGTGAGAAGAACAATATAATAA  550

seq1  TAATAATAATAATAATAATAATAATAATAATGATAATAACTGATAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAATAATAATAATGATAATAACTGATAACAAA  600

seq1  AATGAAGTGAATGTATGTGTTTCATGCCCAAGGAGTGTTAGCACAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTGAATGTATGTGTTTCATGCCCAAGGAGTGTTAGCACAAGAAA  650

seq1  AAGATAGTTTCCCTCCATTAATGCATACTTGTGTCATTCTACCTATTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGTTTCCCTCCATTAATGCATACTTGTGTCATTCTACCTATTTGG  700

seq1  CAATTAAAAGGTGATGGTGAAATCGCTCTATGCCTTTGTGATAATCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAGGTGATGGTGAAATCGCTCTATGCCTTTGTGATAATCTTGT  750

seq1  TGGTAACATGTGCTTACAAGAAACGTTCATAATAATGGCAAAGGCTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAACATGTGCTTACAAGAAACGTTCATAATAATGGCAAAGGCTTCAG  800

seq1  TTTTTCATTCTTAA-TTTCTTTTTCATGTTTTAGGCCACGATTTCCTAAC  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTCTTAATTTTCTTTTTCATGTTTTAGGCCACGATTTCCTAAC  850

seq1  -CAGAATCTGTAAGAGAGATTCCAAGAACTTGGTAAGAGATAGGAACACA  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCTGTAAGAGAGATTCCAAGAACTTGGTAAGAGATAGGAACACA  900

seq1  GTGGGGCCTAAACAGAGGACAGTTTCTGTAATCACTTGTAATATCTATAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCTAAACAGAGGACAGTTTCTGTAATCACTTGTAATATCTATAA  950

seq1  TGTTATACTAGATGAATGGAAATATGAGCATTGTTGAAAGGTGTAATGTT  998
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  TGTTATACTAGATGAATGGAAATATGAGCATTGTTG-AAGTTGTAATGTT  999

seq1  TCAAAGTTTTACAAATGAATTTTATATTAAAATATAAGCTATATTGACAA  1048
      ||||||||| || ||||| ||||||||| |||||||||||||| |||| |
seq2  TCAAAGTTTAAC-AATGATTTTTATATTTAAATATAAGCTATA-TGAC-A  1046

seq1  AATAT-GTGATTATACTGTATATGAAGAGTAAAATAAA  1085
      ||||| ||||||||||||||||||||||||||| ||||
seq2  AATATGGTGATTATACTGTATATGAAGAGTAAATTAAA  1084


seq1: chr16_77829129_77830287
seq2: B6Ng01-339H01.g_68_1261 (reverse)

seq1  GTTCCAT--CCATTTGCTGCAAAATTCATAATGTCC-TCATTTTAAATAG  47
      |||||||  |||||||||||| |  ||| || |||| ||| || ||||||
seq2  GTTCCATTGCCATTTGCTGCAGA--TCA-AAGGTCCTTCAATTAAAATAG  47

seq1  C-TGATA-GCATT-CCATTGTATAAA--TGAA--CCACATTTTC-TGTAT  89
      | ||||| ||||| ||| ||||||||  ||||  |||||||||| |||||
seq2  CTTGATAGGCATTGCCAATGTATAAAATTGAAAGCCACATTTTCTTGTAT  97

seq1  --CCATTCTTCA---TTTGAGG-AATATCTG-AGT--TATATCCAGTTTC  130
        ||||||||||   || |||| ||| |||| |||  |||||||||||||
seq2  TCCCATTCTTCAATTTTAGAGGAAATTTCTGAAGTTATATATCCAGTTTC  147

seq1  T-GGTTA-CTATGAA--TAAGGC--TGCTATG--AACATAGT-GGAGGAC  171
      | ||||| |||||||   |||||   ||||||   ||||||| |||||||
seq2  TGGGTTACCTATGAAATAAAGGCCTGGCTATGGACACATAGTAGGAGGAC  197

seq1  A-TGCCCTGTGGTTGGG-TATATGCTCAGGAGCAGTA-TATCTGGG-TCT  217
      | ||||||||||||||| |||||||||| |||||||| |||||||| |||
seq2  ATTGCCCTGTGGTTGGGTTATATGCTCA-GAGCAGTATTATCTGGGTTCT  246

seq1  TCAGGTA--GAACTATGTC-AAGGAGT-AGTATAATTTTTCCTACAATGA  263
      |||||||   ||||||||| ||||||| ||||||||||||||||||||||
seq2  TCAGGTAAGAAACTATGTCAAAGGAGTAAGTATAATTTTTCCTACAATGA  296

seq1  ATGTAAAAGAGGCTTCATGGTTTTTCA-CCAATATGGCCAGAGGCCTCTT  312
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGTAAAAGAGGCTTCATGGTTTTTCACCCAATATGGCCAGAGGCCTCTT  346

seq1  TTTAGCTGCATGAAGT-AATGTTTGGCTTCTGGTCTCCACCTATGAAAGA  361
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTTAGCTGCATGAAGTAAATGTTTGGCTTCTGGTCTCCACCTATGAAAGA  396

seq1  CCAGCCACACCCACCTTATAATTTCTCTTATTTACTACGATAATAAAGCA  411
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACACCCACCTTATAATTTCTCTTATTTACTACGATAATAAAGCA  446

seq1  GTATCTGCAAACATTAATGGTGCTCTCTGGAAGGGAGTACAGGACTGCCC  461
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGCAAACATTAATGGTGCTCTCTGGAAGGGAGTACAGGACTGCCC  496

seq1  TCCACTTTGGAACACTGGTGAACATGGATGGAAATGTAAAAATTGGCCTT  511
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTGGAACACTGGTGAACATGGATGGAAATGTAAAAATTGGCCTT  546

seq1  ATAAAAATGGTGATGAAAAATCGTTACCCAGATGTACAATTTTTCTTGTT  561
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGGTGATGAAAAATCGTTACCCAGATGTACAATTTTTCTTGTT  596

seq1  ATATTTTCCTGTTGTTAAATTTACAAATGTATTTCCAACAGTTTTCAGGA  611
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTGTTGTTAAATTTACAAATGTATTTCCAACAGTTTTCAGGA  646

seq1  AATAATACTAAAGGAAATAAGTTTTAGCTAAGCTACTTTAAGAGTTACTA  661
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATACTAAAGGAAATAAGTTTTAGCTAAGCTACTTTAAGAGTTACTA  696

seq1  ACAACATTCTCTATATTTATTGCTTTAAATAAAAGTGAATAATTTCTATA  711
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTCTCTATATTTATTGCTTTAAATAAAAGTGAATAATTTCTATA  746

seq1  TGTTATTAGAGATTTATATATCCTATAAAGGATACATAAAATGCAAGTTA  761
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAGAGATTTATATATCCTATAAAGGATACATAAAATGCAAGTTA  796

seq1  TGTATATTTTTATTATCTTACCTTATTTTAATTGGTATATGATAGTTGTT  811
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTTTATTATCTTACCTTATTTTAATTGGTATATGATAGTTGTT  846

seq1  TGAAATGTATAGGGCACAATTTAATATTTTAGTTAATTTGAACCTTGTGA  861
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTATAGGGCACAATTTAATATTTTAGTTAATTTGAACCTTGTGA  896

seq1  AGTAATCAAATTGAGAGCTCACAGCAAATCCATCAAATACAACATCATCT  911
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCAAATTGAGAGCTCACAGCAAATCCATCAAATACAACATCATCT  946

seq1  CCTTGTGTAAGAGCATTGATAACCCTTTTATTATCCATTTTGAAATGTAA  961
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTAAGAGCATTGATAACCCTTTTATTATCCATTTTGAAATGTAA  996

seq1  AATAGTTTGCTATGAACTGAATATGTGAATGCTATGCCCACAGAACACCA  1011
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTGCTATGAACTGAATATGTGAATGCTATGCCCACAGAACACCA  1046

seq1  GAATTAGTACCTCCCACTGAACTGAATATTTGTGCCTAGTGGTCATTGTG  1061
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTACCTCCCACTGAACTGAATATTTGTGCCTAGTGGTCATTGTG  1096

seq1  TCTCTTCTCTCCATCCGTGGAGATGCAGATTTTGACAATCCTCACTTTAG  1111
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTCCATCCGTGGAGATGCAGATTTTGACAATCCTCACTTTAG  1146

seq1  TCTCTACTTCTGAGGGAAGTGTTTTAGATTCCACACATAAGTGAATTC  1159
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTCTGAGGGAAGTGTTTTAGATTCCACACATAAGTGAATTC  1194


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