BAC Information

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BAC

Clone NameB6Ng01-339N18
Chromosome16 (Build37)
Map Location 36,537,462 - 36,538,509
singlet/doubletsinglet
Overlap geneCasr
Upstream geneSema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3
Downstream geneEG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339N18.bB6Ng01-339N18.g
ACCGA123740GA123741
length1,1771,030
definitionB6Ng01-339N18.b B6Ng01-339N18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
catgttcatgtcagagaacctggatgtttcttctacctcccattttccct
agccaattctctcttacttactgacttgtaagaatttttcttacttatat
aaggtataagtcatgttgccctttagctctgtctatggaactgtattaca
ttctcattattttatttttaatgaaatgtagagattttgtctacaatacc
atgatgtagatgaaagaacaatgctaatactcatggcatggtcttggcct
ctatgggaacagatgggttcccactccttaaaaataaatattaagaagaa
aaaggagcaaattactggagaagaaaaacagtatggctgatgctccactc
tgcaagatgatggtggacattgagctagagcctgaactgtttgagatcac
aaacttcactacagcctcagaatgggaaaggtttatttcaaaagttgaag
aagtcttaaataactggaaactgattggatactctctgggaaaaccactg
gaaaaggcttctagtttctgtctgcgcctcggagctgaccctgtgccaca
gctgtccatatccaaattcctcctagagagaactggtctccaaggagtgc
tgacacacagctttgtaggagggacaagccacagtcagagacagcaagac
cagctaacaccagagataaccagatggcaaaaggcaagggcaagaacata
agcaacagaaaccaaggatacttggtgtcatcagaacccagttcttccac
cacagtgagccctggataccccaacataccagaaaagcaagactctgatt
tagaatcacatctcatggtgatgatagaggactttaagaagtacacgaat
agcttaaagaaatccaggagaacacaggttaaacagcttgaagcccttaa
agaggaaacacaaaaatcccttaaagaattgcagcaaacacaaccaaaca
gtgaaggaattgaacaaaaccatccaggatctaaaatggaaatagaaaga
ataaagaaatcacaacggagaacaaccctggagatagaaaacttagggaa
tgtcaggaatcatagtgcaggcatcacaacggaatacaagagaatgaagg
aaagaatcttcacgttgccgagattcatagaaaacctttggaacgaacat
ccaagacaatgtgtgtaatgtgccacg
gaattctctgtgaatgggcttaggcgagagggaacggagccaatagatgc
ggagtcaggtgtttgcatggaccgtgctagcctaatggatgtaagtggac
atgggagaaggcgagtgtttaatggataaataaggcaactcgggtaagca
gtagctaaaagctactgtgtgtttgctagctttgttggttaaggcctcca
gtgatctcagatacactgtccctagctttagatggatgaactggggggga
gactcagagaggtgaagagactcagctgggcacactgagaacgctggaga
aagggttttaaattagatactgctgctcccagaagacctggcaggcacgc
cggagagttttgtgtatatcgtctttatcactctctttcctgaccataga
tccctaaagattctacatctttaatgctcaacaaccattgagtttggatt
ttcaagtctgaagaattcagaacttctgaacctctgtagatctccactca
gccccactgtggaccatccaagtgaacactgtgggcagtgaggcttggga
gtcaggctctgggggcctgggctgaggtgagggagtaacatcacgatagc
cagaagactgggggttgaccgttcaacaaggcagggaacaagtggagaga
aagtgagtgacagccttgggtcaagcacatattccaacatgtgttaaatc
taaacgtatcagggtttctctttctttgagacagggtttcttgcagccca
gtctgacctcagattcactatgcagctgaagataaccctgaacttctgat
cctcattctctacctcccaatgctaggattacagtcatgtggcaccatgc
ttggtttacgcaggctggggattgaagtcaggcttcaatcctgtatgcct
ggccactctaccaacggagctgtatcccaaactctttacagagtctttac
cgtctagcgcaatatgtaaattccaagctcaggcagcaaacagagagtaa
cagaaagcagtgcatctgttacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36537462_36538509
seq2: B6Ng01-339N18.g_65_1094

seq1  GAATTCTCTGTGAATGGGCTTAGGCGAGAGGGAACGGAGCCAATAGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTGAATGGGCTTAGGCGAGAGGGAACGGAGCCAATAGATGC  50

seq1  GGAGTCAGGTGTTTGCATGGACCGTGCTAGCCTAATGGATGTAAGTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGGTGTTTGCATGGACCGTGCTAGCCTAATGGATGTAAGTGGAC  100

seq1  ATGGGAGAAGGCGAGTGTTTAATGGATAAATAAGGCAACTCGGGTAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGAAGGCGAGTGTTTAATGGATAAATAAGGCAACTCGGGTAAGCA  150

seq1  GTAGCTAAAAGCTACTGTGTGTTTGCTAGCTTTGTTGGTTAAGGCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTAAAAGCTACTGTGTGTTTGCTAGCTTTGTTGGTTAAGGCCTCCA  200

seq1  GTGATCTCAGATACACTGTCCCTAGCTTTAGATGGATGAACTGGGGGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTCAGATACACTGTCCCTAGCTTTAGATGGATGAACTGGGGGGGA  250

seq1  GACTCAGAGAGGTGAAGAGACTCAGCTGGGCACACTGAGAACGCTGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAGAGGTGAAGAGACTCAGCTGGGCACACTGAGAACGCTGGAGA  300

seq1  AAGGGTTTTAAATTAGATACTGCTGCTCCCAGAAGACCTGGCAGGCACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTTAAATTAGATACTGCTGCTCCCAGAAGACCTGGCAGGCACGC  350

seq1  CGGAGAGTTTTGTGTATATCGTCTTTATCACTCTCTTTCCTGACCATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGAGTTTTGTGTATATCGTCTTTATCACTCTCTTTCCTGACCATAGA  400

seq1  TCCCTAAAGATTCTACATCTTTAATGCTCAACAACCATTGAGTTTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAAAGATTCTACATCTTTAATGCTCAACAACCATTGAGTTTGGATT  450

seq1  TTCAAGTCTGAAGAATTCAGAACTTCTGAACCTCTGTAGATCTCCACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCTGAAGAATTCAGAACTTCTGAACCTCTGTAGATCTCCACTCA  500

seq1  GCCCCACTGTGGACCATCCAAGTGAACACTGTGGGCAGTGAGGCTTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTGTGGACCATCCAAGTGAACACTGTGGGCAGTGAGGCTTGGGA  550

seq1  GTCAGGCTCTGGGGGCCTGGGCTGAGGTGAGGGAGTAACATCACGATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCTCTGGGGGCCTGGGCTGAGGTGAGGGAGTAACATCACGATAGC  600

seq1  CAGAAGACTGGGGGTTGACCGTTCAACAAGGCAGGGAACAAGTGGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACTGGGGGTTGACCGTTCAACAAGGCAGGGAACAAGTGGAGAGA  650

seq1  AAGTGAGTGACAGCCTTGGGTCAAGCACATATTCCAACATGTGTTAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTGACAGCCTTGGGTCAAGCACATATTCCAACATGTGTTAAATC  700

seq1  TAAACGTATCAGGGTTTCTCTTTCTTTGAGACAGGGTTTCTTGCAGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGTATCAGGGTTTCTCTTTCTTTGAGACAGGGTTTCTTGCAGCCCA  750

seq1  GTCTGACCTCAGATTCACTATGCAGCTGAAGATAACCCTGAACTTCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACCTCAGATTCACTATGCAGCTGAAGATAACCCTGAACTTCTGAT  800

seq1  CCTCATTCTCTACCTCCCAAATGCTAGGATTACAGTCATGTGGCACCATG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCATTCTCTACCTCCC-AATGCTAGGATTACAGTCATGTGGCACCATG  849

seq1  CTTGGTTTACGCAGGCTGGGGATTGAAGTCAGGCTTTCAATCCTGTATGC  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTGGTTTACGCAGGCTGGGGATTGAAGTCAGGC-TTCAATCCTGTATGC  898

seq1  CTGGCCACTCTACCAACGGAGCTGTATCCCCAACTCCTTTAACAGAGTCT  950
      |||||||||||||||||||||||||||||| |||||  || |||||||||
seq2  CTGGCCACTCTACCAACGGAGCTGTATCCCAAACTC--TTTACAGAGTCT  946

seq1  TTAACCGTCTAGCGCATATTGTAAAATTTCCAAAAGGCTCAAGCAAGCAA  1000
      || |||||||||||||   ||||||  ||||||   ||||| || ||| |
seq2  TT-ACCGTCTAGCGCAATATGTAAA--TTCCAA---GCTCAGGC-AGC-A  988

seq1  AACAGAGAGTTAACAAGAAAAGCAAGTGCCATCCTGTTACACACACAC  1048
      ||||||||| |||||   ||||| |||| ||| |||||||||||||||
seq2  AACAGAGAG-TAACA--GAAAGC-AGTG-CAT-CTGTTACACACACAC  1030