BAC Information

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BAC

Clone NameB6Ng01-340A22
Chromosome16 (Build37)
Map Location 87,105,485 - 87,187,350
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901, Grik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340A22.bB6Ng01-340A22.g
ACCGA123879GA123880
length1,1511,114
definitionB6Ng01-340A22.b B6Ng01-340A22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,105,485 - 87,106,642)(87,186,236 - 87,187,350)
sequence
gaattctgatacaagcacctactgtgtgtgctggaaatcattataaattt
cacaataaagcactaagaaatacattatcctgcccatttgggggatgaaa
aagttcaatcaaatactgtgcaataaaaggtatgtcctgagttcaaatac
aagcccatttgctatcaaagcctacatacaacattccattctcttgttcc
cctagaggctgatgccaatttctttccagcttggaacagcttttcctaaa
atgcctccttccaccctgctgcttttgtaatacagtggatggtcagaagt
gaaagcctttgtcaatgcgtcagaaccatgcagggctctcggcacttgtc
cttgatttatttcttatacaagactgtatgtataactgccctgagggcaa
ataattacctttaatctgtactgaagtaaggccatgtccttgaatactgc
attcctactgatacacttaccagcaaaagccatatgtaagtttactgtcc
ggcccttgatatgtgcttgctcatagcccttcagtacctctcctaaggca
aatcaagttttctttttggtaaccaaaagcttgcaaagcacttccttggc
atgtgacatggtgcttggatgtgtttccatacactagacaatatactgtc
cgattatatataggcccagactttcattttcctataacaacagcctgcct
catcaaagttcagggaccattgtgggagagaagatgggaggagagaaagc
cagagcagatacatgactacaaggaaatcttgtcttctggatacacgaga
aaatcctcttgtaaacccacagtgatggtgacagcatgcataatgcttct
gcaagtccaagccaatcaatcaatcaattggattgaagtccagttcaatc
aaggagaatgaagctggacacacagtccacacctagccagggagctatgg
gtaattttggtctggaagagggagagacggttttctctagagtgtagcct
atagttacgtcgaccatattccagtgaagaccacacatgcaggaatgttt
gagcagcataaatggtcttggagctgtgaaaggtgtggggtaccacaatt
cttggctgaaaaagaaggagggattatggaagaataagcaaaaatgagaa
g

gaattctgaactgagattgtcttcagtttcagtatatagaaaactggagt
tcagtagatacaagctattaagtctcagcattcagagacctgacttcaga
acccattttcttgatttcttatatgtttcctctagaatacttttaaaaag
tgcatttaatatctctataaagaaacaacaaaaatattcttactagaaca
tgaaatagtctcatcttcatgaacaacagaaagctcccatatttctgagt
taaaatgtgtgaacagcccatccttgatattgaatgactgtcctcgttag
acttaattgccaacttgccacagcctagagagatgggtctcaattttcct
aatgttttccttttattcagttcctcatgttgtggtaaactttaaccata
aagttatttttgtttctacttcatagctgtaaatttgccatagctgtgaa
ttgtaatgtaaatatttttggagatggagatttgccaaaggggtcactac
tcacagattgagaaacactggcctagtgtcacctgatcataaagcctcga
tcgagaaattgatgagctcatatggacttttgggaatcccgttggggaat
tgttttgattgttaatagatataggagagccaagccctctatggatggta
ccattgcctggactgatagtcctagactgtattagaaatctaggtaaacc
tggatgtgggagtgatctttctagtagcaagcatcatcctccatggctcc
tgatatccctctttgactgtgagtgagttcctaggttggaggcaacactg
cctagaatagcagaagtcttgtcactgtatgtttgccttgaattccttcc
tgactctcctcaatgaactgtgatctggaactatgagtacgaattctcct
ctgttccaagcttgtcttggtcagtgcgttatttgaacagaaaggaaact
agaacaaagaacctacacttcctttgtttcttcatgtcctgatcttttct
gtttctttttgcagtttggattagatattttttctcacttcaattccttc
atgaaagaaatagaagtttattgttcttttctttcactcgactgttaaag
ttgacagttgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87105485_87106642
seq2: B6Ng01-340A22.b_47_1197

seq1  GAATTCTGATACAAGCACCTACTGTGTGTGCTGGAAATCATTATAAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATACAAGCACCTACTGTGTGTGCTGGAAATCATTATAAATTT  50

seq1  CACAATAAAGCACTAAGAAATACATTATCCTGCCCATTTGGGGGATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAGCACTAAGAAATACATTATCCTGCCCATTTGGGGGATGAAA  100

seq1  AAGTTCAATCAAATACTGTGCAATAAAAGGTATGTCCTGAGTTCAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAATCAAATACTGTGCAATAAAAGGTATGTCCTGAGTTCAAATAC  150

seq1  AAGCCCATTTGCTATCAAAGCCTACATACAACATTCCATTCTCTTGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATTTGCTATCAAAGCCTACATACAACATTCCATTCTCTTGTTCC  200

seq1  CCTAGAGGCTGATGCCAATTTCTTTCCAGCTTGGAACAGCTTTTCCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGCTGATGCCAATTTCTTTCCAGCTTGGAACAGCTTTTCCTAAA  250

seq1  ATGCCTCCTTCCACCCTGCTGCTTTTGTAATACAGTGGATGGTCAGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCTTCCACCCTGCTGCTTTTGTAATACAGTGGATGGTCAGAAGT  300

seq1  GAAAGCCTTTGTCAATGCGTCAGAACCATGCAGGGCTCTCGGCACTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTTTGTCAATGCGTCAGAACCATGCAGGGCTCTCGGCACTTGTC  350

seq1  CTTGATTTATTTCTTATACAAGACTGTATGTATAACTGCCCTGAGGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTATTTCTTATACAAGACTGTATGTATAACTGCCCTGAGGGCAA  400

seq1  ATAATTACCTTTAATCTGTACTGAAGTAAGGCCATGTCCTTGAATACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACCTTTAATCTGTACTGAAGTAAGGCCATGTCCTTGAATACTGC  450

seq1  ATTCCTACTGATACACTTACCAGCAAAAGCCATATGTAAGTTTACTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTACTGATACACTTACCAGCAAAAGCCATATGTAAGTTTACTGTCC  500

seq1  GGCCCTTGATATGTGCTTGCTCATAGCCCTTCAGTACCTCTCCTAAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGATATGTGCTTGCTCATAGCCCTTCAGTACCTCTCCTAAGGCA  550

seq1  AATCAAGTTTTCTTTTTGGTAACCAAAAGCTTGCAAAGCACTTCCTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTTTTCTTTTTGGTAACCAAAAGCTTGCAAAGCACTTCCTTGGC  600

seq1  ATGTGACATGGTGCTTGGATGTGTTTCCATACACTAGACAATATACTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACATGGTGCTTGGATGTGTTTCCATACACTAGACAATATACTGTC  650

seq1  CGATTATATATAGGCCCAGACTTTCATTTTCCTATAACAACAGCCTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTATATATAGGCCCAGACTTTCATTTTCCTATAACAACAGCCTGCCT  700

seq1  CATCAAAGTTCAGGGACCATTGTGGGAGAGAAGATGGGAGGAGAGAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAGTTCAGGGACCATTGTGGGAGAGAAGATGGGAGGAGAGAAAGC  750

seq1  CAGAGCAGATACATGACTACAAGGAAATCTTGTCTTCTGGATACACGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGATACATGACTACAAGGAAATCTTGTCTTCTGGATACACGAGA  800

seq1  AAATCCTCTTGTAAACCCACAGTGATGGTGACAGCATGCATAATGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCTTGTAAACCCACAGTGATGGTGACAGCATGCATAATGCTTCT  850

seq1  GCAAGTCCAAGCCAATCAATCAATCAATTGGATTGAAGTCCAGTTCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTCCAAGCCAATCAATCAATCAATTGGATTGAAGTCCAGTTCAATC  900

seq1  AAGGAGAATGAAGCTGGACACACAGTCCACACCTAGCCAGGGAGCTATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATGAAGCTGGACACACAGTCCACACCTAGCCAGGGAGCTATGG  950

seq1  GTAATTTTGGTCTGGAAGAGGGAGAGACGGTTTTCTCTAAGAGTGTAGCC  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTAATTTTGGTCTGGAAGAGGGAGAGACGGTTTTCTCT-AGAGTGTAGCC  999

seq1  TATAGTTACGTCGACCATATTCCAGTGAAAGACCACACATGCAGGAATGT  1050
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATAGTTACGTCGACCATATTCCAGTG-AAGACCACACATGCAGGAATGT  1048

seq1  TTGAGCAGCATAAATTGGTCTTGGAGGCTGTGAAAAGGTGTGGGGTA-CA  1099
      |||||||||||||| |||||||||| |||||| |||||||||||||| ||
seq2  TTGAGCAGCATAAA-TGGTCTTGGA-GCTGTG-AAAGGTGTGGGGTACCA  1095

seq1  CAAATC-TGGCTGAGAAAAGAAGGAGGGGAGTATGGGAAGAATTAGCAAA  1148
      ||| || ||||||| |||||||||| |||| ||| |||||||| ||| ||
seq2  CAATTCTTGGCTGA-AAAAGAAGGA-GGGATTAT-GGAAGAATAAGC-AA  1141

seq1  AAATGAGAAG  1158
      ||||||||||
seq2  AAATGAGAAG  1151


seq1: chr16_87186236_87187350
seq2: B6Ng01-340A22.g_67_1180 (reverse)

seq1  AAATCCACTGTCAACTTTAACAGTCGAAGTGAAAGGAAAAGACA--TAAC  48
      ||||| |||||||||||||||||||| |||||||| |||  |||   |||
seq2  AAATCAACTGTCAACTTTAACAGTCG-AGTGAAAGAAAAGAACAATAAAC  49

seq1  TTCTATTTCTTTCATGAAGGAATTTGAGTGAGAAAAATATTCTAATCCAA  98
      ||||||||||||||||||||||||  |||||||||||   ||||||||||
seq2  TTCTATTTCTTTCATGAAGGAATTGAAGTGAGAAAAAATATCTAATCCAA  99

seq1  ACTGCAAAAAGAAACAGAAAAGATCAGGACATGAAGAAACAAAGGAAGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTGCAAAAAGAAACAGAAAAGATCAGGACATGAAGAAACAAAGGAAGT-  148

seq1  GTAGGTTTCTTTGTTCTAGTTTCCTTTCTGTTCAAATAACGCACTGACCA  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGG-TTCTTTGTTCTAGTTTCCTTTCTGTTCAAATAACGCACTGACCA  197

seq1  AGACAAGCTTGGAACAGAGGAGAATTCGTACTCATAGTTCCAGATCACAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGCTTGGAACAGAGGAGAATTCGTACTCATAGTTCCAGATCACAG  247

seq1  TTCATTGAGGAGAGTCAGGAAGGAATTCAAGGCAAACATACAGTGACAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGAGGAGAGTCAGGAAGGAATTCAAGGCAAACATACAGTGACAAG  297

seq1  ACTTCTGCTATTCTAGGCAGTGTTGCCTCCAACCTAGGAACTCACTCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCTATTCTAGGCAGTGTTGCCTCCAACCTAGGAACTCACTCACA  347

seq1  GTCAAAGAGGGATATCAGGAGCCATGGAGGATGATGCTTGCTACTAGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAGGGATATCAGGAGCCATGGAGGATGATGCTTGCTACTAGAAA  397

seq1  GATCACTCCCACATCCAGGTTTACCTAGATTTCTAATACAGTCTAGGACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTCCCACATCCAGGTTTACCTAGATTTCTAATACAGTCTAGGACT  447

seq1  ATCAGTCCAGGCAATGGTACCATCCATAGAGGGCTTGGCTCTCCTATATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCAGGCAATGGTACCATCCATAGAGGGCTTGGCTCTCCTATATC  497

seq1  TATTAACAATCAAAACAATTCCCCAACGGGATTCCCAAAAGTCCATATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACAATCAAAACAATTCCCCAACGGGATTCCCAAAAGTCCATATGA  547

seq1  GCTCATCAATTTCTCGATCGAGGCTTTATGATCAGGTGACACTAGGCCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCAATTTCTCGATCGAGGCTTTATGATCAGGTGACACTAGGCCAG  597

seq1  TGTTTCTCAATCTGTGAGTAGTGACCCCTTTGGCAAATCTCCATCTCCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCAATCTGTGAGTAGTGACCCCTTTGGCAAATCTCCATCTCCAA  647

seq1  AAATATTTACATTACAATTCACAGCTATGGCAAATTTACAGCTATGAAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTACATTACAATTCACAGCTATGGCAAATTTACAGCTATGAAGT  697

seq1  AGAAACAAAAATAACTTTATGGTTAAAGTTTACCACAACATGAGGAACTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAAAATAACTTTATGGTTAAAGTTTACCACAACATGAGGAACTG  747

seq1  AATAAAAGGAAAACATTAGGAAAATTGAGACCCATCTCTCTAGGCTGTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGAAAACATTAGGAAAATTGAGACCCATCTCTCTAGGCTGTGG  797

seq1  CAAGTTGGCAATTAAGTCTAACGAGGACAGTCATTCAATATCAAGGATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGGCAATTAAGTCTAACGAGGACAGTCATTCAATATCAAGGATGG  847

seq1  GCTGTTCACACATTTTAACTCAGAAATATGGGAGCTTTCTGTTGTTCATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCACACATTTTAACTCAGAAATATGGGAGCTTTCTGTTGTTCATG  897

seq1  AAGATGAGACTATTTCATGTTCTAGTAAGAATATTTTTGTTGTTTCTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGACTATTTCATGTTCTAGTAAGAATATTTTTGTTGTTTCTTTA  947

seq1  TAGAGATATTAAATGCACTTTTTAAAAGTATTCTAGAGGAAACATATAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATATTAAATGCACTTTTTAAAAGTATTCTAGAGGAAACATATAAG  997

seq1  AAATCAAGAAAATGGGTTCTGAAGTCAGGTCTCTGAATGCTGAGACTTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAAAATGGGTTCTGAAGTCAGGTCTCTGAATGCTGAGACTTAA  1047

seq1  TAGCTTGTATCTACTGAACTCCAGTTTTCTATATACTGAAACTGAAGACA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTATCTACTGAACTCCAGTTTTCTATATACTGAAACTGAAGACA  1097

seq1  ATCTCAGTTCAGAATTC  1115
      |||||||||||||||||
seq2  ATCTCAGTTCAGAATTC  1114


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