BAC Information

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BAC

Clone NameB6Ng01-340E23
Chromosome16 (Build37)
Map Location 9,573,169 - 9,574,336
singlet/doubletsinglet
Overlap genenone
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340E23.bB6Ng01-340E23.g
ACCGA124052GA124053
length1,2301,198
definitionB6Ng01-340E23.b B6Ng01-340E23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttttgctgcatacaagaaacatacctcatcgtcgaggataga
cattagttcagacaaaagtcagaaaaaaaaatctttcaagtaaatgaact
taagaagcaaacttctgtagccgttctaatatctaacaaaatagacctca
aaccaaaactaataaaaagagatagggaaagacactgcatgctcatcaaa
ggaaaaacatcaaccaagatgatttttcaattcttaacttctatgccaca
aacacaaggataaccaagtttataaaagaaacactacagcttaaatcaca
tactgaccctcacacactgagagtgggagacttcgaaactctcaccaatg
gacaggtcatatagacaaggaataaacagagaaatactgggcttaaaaga
tgtaaattaaatgggcctaacatatttaaagaacatttcagtcaaacata
aaagaatataccttctactcagcaccttatgaactttctccaaaactgat
cacatagtcaggcataaagcaagcctacagatacaagaaaattgaaacaa
ctccttacatctcatcagaccaccatgaattaaaggttggtattatctac
aacagaaacaacagaaagcatagaaactgaacaactttactgaatgaaaa
atggattaaaacagaaataaagaaattaaaagactttctagaattcaata
aaagtgaatacatagtatacctaaatttatagacacaatgaaagcagtgc
taagaggaaagtacatagcactaagtgcctatatttacaaaaaaaattgg
agatatctcatactatcaacttaacagcacacatgaaaaaaaaaacccgc
ccaagagtagtaaatagcagaatagaaataattaaactgatagatgaagt
aaataaaatagaaacaaagaaataaaatacaaataatgaaacaagaattg
atttttgagaaaatcacaagagggataaccatgatccaactaagtaaagt
atagaaagtattgaaattatcaaaatcagaaggaaaaatgggatatagtg
acactaaagaaaatccagagaatcataaagacatacttaaagtcctgtac
tcacaaaatggaaaaatctaaaaaaatgagataatttctcataggtacca
ctttatcacggttatcaagtcagacaaattagaacctataacccttaagt
gaatgagagagccaggatataaattagatc
gaattctttgcgatctgaattgctaatgaaaaagaaagttggtgttaatt
aaatgatgattaaaaatttatttcccttaaacctaaaaagtaaagcttta
ataattgcttgtcatataaataaataccttgcactgaggtttcttgtggt
ttaagacctaaatagatactgattcaagaaaccaaaatctctttcaaagg
agttgaaggcacccaatagcattatgcccattcctggactgtttctttgt
gtggagctggcttgtgtgaatccttcagcaaaggacaaaagctgtttcaa
ggtggagctgtttggcactaacgttggctataatagacttacctggactt
caagaaataaaatttaaacaggaggaagccaaatttatcggtccatattt
aatagtaattcaagctctaaaggaaagagccctagggctggagagatggc
tcagtggctgctcttccagaggtcctgagttcaattccctgcaaccacat
ggtggctcacaactgtctgtaactttagttccaggggatctggcacctca
cacagacacatatgcaggcaaagcatcaatgcacacaaaaataataaatc
tttaaaaaacgaaagaaagaaagaaagacagaaaagagaccttccttcca
aaagcattgttcagttgcacttgagtcaagaattggcctgtctgtgcctc
cctcttcctttggttaaatagggtcaaaatgttcattgagagttttgggg
tctctacttgaaaagtttttccaatgcagagttgccctttttcagtcagc
cattttcctatgtactgtgttcatctctaatttgtctctgatgaggtcag
cttgatacagatcagagatgatttgaatgcacttctgtgaatacagttgc
tcatgtacacatgtatatattatacatgcttgatttctacagctcacact
taagtgtattattccaagcaaacctgtacatattgtaaagtttatgttaa
aaattaaatggtggccggtggtggtgaacacacaggaaaaaaattctgaa
ttatttttgattaggagggtctttatatgtgaagaagctattattatttt
ttttaacttatcaagcttcctaggaaaagattgaaagggtcctcaaggcg
caatttgagaccactgatgtcctctttgtgtccccttaaggacacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_9573169_9574336
seq2: B6Ng01-340E23.g_65_1262 (reverse)

seq1  TTTGT-TCCTTAAGGGG--ACAAAGAG--CATCAGTG--CTCAAAT--CC  41
      ||||| |||||||||||  ||||||||  ||||||||  |||||||  | 
seq2  TTTGTGTCCTTAAGGGGACACAAAGAGGACATCAGTGGTCTCAAATTGCG  50

seq1  CCCTGAG--CCCTATCATCC--TTCCTAG--AGC-TGAT-AGTTAAAAAA  83
      || ||||  |||| |||  |  |||||||  ||| |||| ||||||||||
seq2  CCTTGAGGACCCTTTCAATCTTTTCCTAGGAAGCTTGATAAGTTAAAAAA  100

seq1  A--TATAATGCCTTCTCTAC--ATAAATACCCTCCT-ATC-AAAATAA-T  126
      |   |||||  |||||  ||  ||||| |||||||| ||| ||||||| |
seq2  AATAATAATAGCTTCTTCACATATAAAGACCCTCCTAATCAAAAATAATT  150

seq1  CAGAATTTTTTTCCTGTGTGTTCA-CACCACC-GCCACCATTTAATTTTT  174
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  CAGAATTTTTTTCCTGTGTGTTCACCACCACCGGCCACCATTTAATTTTT  200

seq1  AACATAAACTTTACAATATGTACAGGTTTGCTTGG-ATAATACACTTAAG  223
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACATAAACTTTACAATATGTACAGGTTTGCTTGGAATAATACACTTAAG  250

seq1  TGTGAGCTGTAGAAATCAAGCATGTATAATATATACATGTGTACATGAGC  273
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGTAGAAATCAAGCATGTATAATATATACATGTGTACATGAGC  300

seq1  AACTGTATTCACAGAAGTGCATTC-AATCATCTCTGATCTGTATCAAGCT  322
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACTGTATTCACAGAAGTGCATTCAAATCATCTCTGATCTGTATCAAGCT  350

seq1  GACCTCATCAGAGAC-AATTAGAGATGAACACAGTACATAGGAAAATGGC  371
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACCTCATCAGAGACAAATTAGAGATGAACACAGTACATAGGAAAATGGC  400

seq1  TGACTGAAAAAGGGCAACTCTGCATTGGAAAAACTTTTCAAGTAGAGACC  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAAAAAGGGCAACTCTGCATTGGAAAAACTTTTCAAGTAGAGACC  450

seq1  CCAAAACTCTCAATGAACATTTTGACCCTATTTAACCAAAGGAAGAGGGA  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTCTCAATGAACATTTTGACCCTATTTAACCAAAGGAAGAGGGA  500

seq1  GGCACAGACAGGCCAATTCTTGACTCAAGTGCAACTGAACAATGCTTTTG  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGACAGGCCAATTCTTGACTCAAGTGCAACTGAACAATGCTTTTG  550

seq1  GAAGGAAGGTCTCTTTTCTGTCTTTCTTTC-TTCTTTCGTTTTTTAAAGA  570
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAGGAAGGTCTCTTTTCTGTCTTTCTTTCTTTCTTTCGTTTTTTAAAGA  600

seq1  TTTATTATTTTTGTGTGCATTGATGCTTTGCCTGCATATGTGTCTGTGTG  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTTTGTGTGCATTGATGCTTTGCCTGCATATGTGTCTGTGTG  650

seq1  AGGTGCCAGATCCCCTGGAACTAAAGTTACAGACAGTTGTGAGCCACCAT  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAGATCCCCTGGAACTAAAGTTACAGACAGTTGTGAGCCACCAT  700

seq1  GTGGTTGCAGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCACTGAGC  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGCAGGGAATTGAACTCAGGACCTCTGGAAGAGCAGCCACTGAGC  750

seq1  CATCTCTCCAGCCCTAGGGCTCTTTCCTTTAGAGCTTGAATTACTATTAA  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCCCTAGGGCTCTTTCCTTTAGAGCTTGAATTACTATTAA  800

seq1  ATATGGACCGATAAATTTGGCTTCCTCCTGTTTAAATTTTATTTCTTGAA  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGACCGATAAATTTGGCTTCCTCCTGTTTAAATTTTATTTCTTGAA  850

seq1  GTCCAGGTAAGTCTATTATAGCCAACGTTAGTGCCAAACAGCTCCACCTT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGTAAGTCTATTATAGCCAACGTTAGTGCCAAACAGCTCCACCTT  900

seq1  GAAACAGCTTCTGTCCTTTGCTGAAGGATTCACACAAGACAGCTCCACAC  920
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  GAAACAGCTTTTGTCCTTTGCTGAAGGATTCACACAAGCCAGCTCCACAC  950

seq1  AAAGAAACAGTCCAGGAATGCGCATAATGCTATTGGGTGCCTTCAACTCC  970
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAGAAACAGTCCAGGAATGGGCATAATGCTATTGGGTGCCTTCAACTCC  1000

seq1  TTTGAAAGAGATTTTGGTTTCTTGAATCAGTATCTATTTAGGTCTTAAAC  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGAGATTTTGGTTTCTTGAATCAGTATCTATTTAGGTCTTAAAC  1050

seq1  CACAAGAAACCTCAGTGCAAGGTATTTATTTATATGACAAGCAATTATTA  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAACCTCAGTGCAAGGTATTTATTTATATGACAAGCAATTATTA  1100

seq1  AAGCTTTACTTTTTAGGTTTAAGGGAAATAAATTTTTAATCATCATTTAA  1120
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTACTTTTTAGGTTTAAGGGAAATAAATTTTTAATCATCATTTAA  1150

seq1  TTAACACCAACTTTCTTTTTCATTAGCAATTCTATTTGCAAAGAATTC  1168
      ||||||||||||||||||||||||||||||||   | |||||||||||
seq2  TTAACACCAACTTTCTTTTTCATTAGCAATTCAGATCGCAAAGAATTC  1198