BAC Information

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BAC

Clone NameB6Ng01-341C21
Chromosome16 (Build37)
Map Location 55,012,094 - 55,133,588
singlet/doubletdoublet
Overlap geneLOC436421
Upstream geneLOC100043442, LOC100043449, LOC667927
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341C21.bB6Ng01-341C21.g
ACCGA124646GA124647
length1,0921,172
definitionB6Ng01-341C21.b B6Ng01-341C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,132,493 - 55,133,588)(55,012,094 - 55,013,265)
sequence
gaattcagtgttcagtgtgtagtaaactttagagaatatcttataagtac
taccatggcacacttactactgaaacaaatgctgccagtaattgcttaac
taaatattgacttttattctaacccatgaaaagcattttactgttttcac
ccatttaattttatgtctgcacatagttccatttgattcttccttttgat
tttcagtccactcaatgaagtgcctttttagatgctgcagttacttcaga
tttcgagttaaaagaaaacatttaaagctaactagtttgagagagataat
tttgatttgccttttgttcctatgcagaactctcaagaggaaaaggaaac
tcctggcatgtagtttgtttttctagtctatatcttagacacaggcaaga
aacttttctttttctgcctttctgtgttcatctctctatttctctttgta
tgtgtctgtggatcttcttgtttctgtgtctgtcttgtctgtctgtctct
gttcctctgtgtgtgtgtgtctctctctctctgtctctctctgtcctttt
ttcctttctgtacaccaaggtcagaaataaagaccaagacaaaaaccaaa
ccaaacttttattttagatggatgggctgagttgtgtaacaccttgtgag
ctctttctttaattacaggacagattattttctcagtcatcctacagact
ttcatttatgtttcgtaagtgaagacgtgcccatcgcctttatagttcgt
atcatttctatgcacatgttaaatatgtacatatctacaattttcaaaag
catatacacattgattttatgcatatagtaaggccagtgaagatttgtaa
agcaaatgctcataaattataaagttattatggatcatttattctgtttt
cagttattatcaataatcattgccattggtgctattttttgtgtctccaa
atatagctagaacaccggcacttcctggtggagaagcacaagggtccgcc
tgtccgagaagtttctgcctcaagcctccgcggtagccacttggttctgg
gactcgtggaggacagctgcacggtgagggtggtggaataca
gaattcatacatcatgtgaaattctttcttttaaacattttgagaatttc
tcttttcatctaaaattagtagaagggaatggcaggtttctgtaaagaat
ttgctctgaaagctgaagcacagtcaagtccctaaattattcaaaatcct
cccgtctttactaatgacttttttatgtgaaggagcagaagcagcagttc
cttccagggaatctggttaaaatattttagctgaggccttgaaactaaaa
agttttaaaattctctgcatatcttcatgctcatctgaacaggagacttt
aaaatatgtgatctttatgtttctttacatgagaaatgaaagaagtgctt
tgaaatggaaattttttttctagcatgaacagcctcaatgattgtgtgac
taactgctccaaggcggagatttgacatttccccagtaatagttggagtc
attgaaaccttttgaactttcaaaagaaatagaatgatctggctaacaat
tacaaaatcagggtagtttctagtgaagttggcagaattcttgcaagccc
aactctatcggaatcctctttttgacagactgtatcacttaacagacaac
tttacttatatcctttctttgtaagctgtatgtgtctcaaaaatacactt
cgaccttaacttcagtttgggaaacatatttcaagctgtggtccattttc
ttactaaggagtctattgtagtggaagcttttgcatagctaatttccggc
tagtgcttcataaattacttaaactacccttttactaagaatgaaaagaa
agttatggccattaaagtttcttagagattatatgagtagtcttaggttt
tgtttcctggatcttcataggacatttagtgcttatttgctaagtatgtg
aaaacagaatcttgtccatatgtgataaatcttatgtaaatattactaag
gattagcctcataaaatcttatttttgttaaatcttttcctcatagcaga
tacagtgagttagggttgaaatatattgattcaaatatcaggaaaactga
atcctttccttacctggcattgattcaataaataaaagccttaacatttt
attttgctgtggttatatacgagatagcataggtactatgaacgttttgc
ctctgtatggaacaccaagtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_55132493_55133588
seq2: B6Ng01-341C21.b_47_1138 (reverse)

seq1  TGTATTCCA-CACCCTCACCGGTGCAGCCTGTCCTCCACGGAGTCCCAGA  49
      ||||||||| |||||||||| |||||| ||||||||||| ||||||||||
seq2  TGTATTCCACCACCCTCACC-GTGCAG-CTGTCCTCCAC-GAGTCCCAGA  47

seq1  ACCAAGGTGGCTACCGCGGA-GCCTGAGGCAGAAACCTCTCGGGCCAGGC  98
      ||||| |||||||||||||| || |||||||||||| |||| || |||||
seq2  ACCAA-GTGGCTACCGCGGAGGCTTGAGGCAGAAACTTCTC-GGACAGGC  95

seq1  GGACCCCTGTGC-TCT-CACCAGGAAGGTGGCCGGTTGTCTAGCTATATT  146
      |||||| ||||| ||| ||||||||||   ||||||  |||||||||| |
seq2  GGACCCTTGTGCTTCTCCACCAGGAAG--TGCCGGTGTTCTAGCTATA-T  142

seq1  TTGGAGACAACAAAAATAGCACCAATGGCAATGATTATTGATAATAACTG  196
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACACAAAAAATAGCACCAATGGCAATGATTATTGATAATAACTG  192

seq1  AAAACAGAATAAATGATCCATAATAACTTTATAATTTATGAGCATTTGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAATAAATGATCCATAATAACTTTATAATTTATGAGCATTTGCT  242

seq1  TTACAAATCTTCACTGGCCTTACTATATGCATAAAATCAATGTGTATATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATCTTCACTGGCCTTACTATATGCATAAAATCAATGTGTATATG  292

seq1  CTTTTGAAAATTGTAGATATGTACATATTTAACATGTGCATAGAAATGAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAAATTGTAGATATGTACATATTTAACATGTGCATAGAAATGAT  342

seq1  ACGAACTATAAAGGCGATGGGCACGTCTTCACTTACGAAACATAAATGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACTATAAAGGCGATGGGCACGTCTTCACTTACGAAACATAAATGAA  392

seq1  AGTCTGTAGGATGACTGAGAAAATAATCTGTCCTGTAATTAAAGAAAGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTAGGATGACTGAGAAAATAATCTGTCCTGTAATTAAAGAAAGAG  442

seq1  CTCACAAGGTGTTACACAACTCAGCCCATCCATCTAAAATAAAAGTTTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGGTGTTACACAACTCAGCCCATCCATCTAAAATAAAAGTTTGG  492

seq1  TTTGGTTTTTGTCTTGGTCTTTATTTCTGACCTTGGTGTACAGAAAGGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTGTCTTGGTCTTTATTTCTGACCTTGGTGTACAGAAAGGAA  542

seq1  AAAAGGACAGAGAGAGACAGAGAGAGAGAGACACACACACACAGAGGAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACAGAGAGAGACAGAGAGAGAGAGACACACACACACAGAGGAAC  592

seq1  AGAGACAGACAGACAAGACAGACACAGAAACAAGAAGATCCACAGACACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACAGACAAGACAGACACAGAAACAAGAAGATCCACAGACACA  642

seq1  TACAAAGAGAAATAGAGAGATGAACACAGAAAGGCAGAAAAAGAAAAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAGAAATAGAGAGATGAACACAGAAAGGCAGAAAAAGAAAAGTT  692

seq1  TCTTGCCTGTGTCTAAGATATAGACTAGAAAAACAAACTACATGCCAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTGTGTCTAAGATATAGACTAGAAAAACAAACTACATGCCAGGA  742

seq1  GTTTCCTTTTCCTCTTGAGAGTTCTGCATAGGAACAAAAGGCAAATCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTTCCTCTTGAGAGTTCTGCATAGGAACAAAAGGCAAATCAAA  792

seq1  ATTATCTCTCTCAAACTAGTTAGCTTTAAATGTTTTCTTTTAACTCGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCTCTCAAACTAGTTAGCTTTAAATGTTTTCTTTTAACTCGAAA  842

seq1  TCTGAAGTAACTGCAGCATCTAAAAAGGCACTTCATTGAGTGGACTGAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTAACTGCAGCATCTAAAAAGGCACTTCATTGAGTGGACTGAAA  892

seq1  ATCAAAAGGAAGAATCAAATGGAACTATGTGCAGACATAAAATTAAATGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGGAAGAATCAAATGGAACTATGTGCAGACATAAAATTAAATGG  942

seq1  GTGAAAACAGTAAAATGCTTTTCATGGGTTAGAATAAAAGTCAATATTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACAGTAAAATGCTTTTCATGGGTTAGAATAAAAGTCAATATTTA  992

seq1  GTTAAGCAATTACTGGCAGCATTTGTTTCAGTAGTAAGTGTGCCATGGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCAATTACTGGCAGCATTTGTTTCAGTAGTAAGTGTGCCATGGTA  1042

seq1  GTACTTATAAGATATTCTCTAAAGTTTACTACACACTGAACACTGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATAAGATATTCTCTAAAGTTTACTACACACTGAACACTGAATTC  1092

seq1: chr16_55012094_55013265
seq2: B6Ng01-341C21.g_67_1238

seq1  GAATTCATACATCATGTGAAATTCTTTCTTTTAAACATTTTGAGAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACATCATGTGAAATTCTTTCTTTTAAACATTTTGAGAATTTC  50

seq1  TCTTTTCATCTAAAATTAGTAGAAGGGAATGGCAGGTTTCTGTAAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCATCTAAAATTAGTAGAAGGGAATGGCAGGTTTCTGTAAAGAAT  100

seq1  TTGCTCTGAAAGCTGAAGCACAGTCAAGTCCCTAAATTATTCAAAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGAAAGCTGAAGCACAGTCAAGTCCCTAAATTATTCAAAATCCT  150

seq1  CCCGTCTTTACTAATGACTTTTTTATGTGAAGGAGCAGAAGCAGCAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCTTTACTAATGACTTTTTTATGTGAAGGAGCAGAAGCAGCAGTTC  200

seq1  CTTCCAGGGAATCTGGTTAAAATATTTTAGCTGAGGCCTTGAAACTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGGAATCTGGTTAAAATATTTTAGCTGAGGCCTTGAAACTAAAA  250

seq1  AGTTTTAAAATTCTCTGCATATCTTCATGCTCATCTGAACAGGAGACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAAAATTCTCTGCATATCTTCATGCTCATCTGAACAGGAGACTTT  300

seq1  AAAATATGTGATCTTTATGTTTCTTTACATGAGAAATGAAAGAAGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTGATCTTTATGTTTCTTTACATGAGAAATGAAAGAAGTGCTT  350

seq1  TGAAATGGAAATTTTTTTTCTAGCATGAACAGCCTCAATGATTGTGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGAAATTTTTTTTCTAGCATGAACAGCCTCAATGATTGTGTGAC  400

seq1  TAACTGCTCCAAGGCGGAGATTTGACATTTCCCCAGTAATAGTTGGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCTCCAAGGCGGAGATTTGACATTTCCCCAGTAATAGTTGGAGTC  450

seq1  ATTGAAACCTTTTGAACTTTCAAAAGAAATAGAATGATCTGGCTAACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACCTTTTGAACTTTCAAAAGAAATAGAATGATCTGGCTAACAAT  500

seq1  TACAAAATCAGGGTAGTTTCTAGTGAAGTTGGCAGAATTCTTGCAAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATCAGGGTAGTTTCTAGTGAAGTTGGCAGAATTCTTGCAAGCCC  550

seq1  AACTCTATCGGAATCCTCTTTTTGACAGACTGTATCACTTAACAGACAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATCGGAATCCTCTTTTTGACAGACTGTATCACTTAACAGACAAC  600

seq1  TTTACTTATATCCTTTCTTTGTAAGCTGTATGTGTCTCAAAAATACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATATCCTTTCTTTGTAAGCTGTATGTGTCTCAAAAATACACTT  650

seq1  CGACCTTAACTTCAGTTTGGGAAACATATTTCAAGCTGTGGTCCATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTAACTTCAGTTTGGGAAACATATTTCAAGCTGTGGTCCATTTTC  700

seq1  TTACTAAGGAGTCTATTGTAGTGGAAGCTTTTGCATAGCTAATTTCCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGGAGTCTATTGTAGTGGAAGCTTTTGCATAGCTAATTTCCGGC  750

seq1  TAGTGCTTCATAAATTACTTAAACTACCCTTTTACTAAGAATGAAAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTCATAAATTACTTAAACTACCCTTTTACTAAGAATGAAAAGAA  800

seq1  AGTTATGGCCATTAAAGTTTCTTAGAGATTATATGAGTAGTCTTAGGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGGCCATTAAAGTTTCTTAGAGATTATATGAGTAGTCTTAGGTTT  850

seq1  TGTTTCCTGGATCTTCATAGGACATTTAGTGCTTTATTTGCTAAGTATGT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTTCCTGGATCTTCATAGGACATTTAGTGC-TTATTTGCTAAGTATGT  899

seq1  GAAAACAGAATCTTGTCCATATGTGATAAATCTTATGTAAATATTACTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAATCTTGTCCATATGTGATAAATCTTATGTAAATATTACTAA  949

seq1  GGATTAGCCTCATAAAATCT--ATTTTGTTAAATC-TTTCCTCATAGCAA  997
      ||||||||||||||||||||   |||||||||||| ||||||||||||| 
seq2  GGATTAGCCTCATAAAATCTTATTTTTGTTAAATCTTTTCCTCATAGCA-  998

seq1  GAATACAGGTGAG-TAGGG-TGAA--ATATTGA-TCAAATAATCAAGAAA  1042
        ||||| ||||| ||||| ||||  ||||||| |||||| |||| ||||
seq2  -GATACA-GTGAGTTAGGGTTGAAATATATTGATTCAAAT-ATCAGGAAA  1045

seq1  ACTGAATCCTTTCCCTACCTTGCCATTGATTTCAAATAAATAAAAGCTTT  1092
      |||||||||||||| |||| || ||||||||   ||||||||||||| ||
seq2  ACTGAATCCTTTCCTTACC-TGGCATTGATT--CAATAAATAAAAGCCTT  1092

seq1  AACATTTTTATTTGCTTGTGGTTATTATCAGAAATTAGGCATAGTTACTA  1142
      ||||||||  ||||| |||||||| |||  || ||   |||||| |||||
seq2  AACATTTTATTTTGC-TGTGGTTA-TATACGAGAT--AGCATAGGTACTA  1138

seq1  TG-ACCTTTTGCC-CTGTATGGA--ACCAAGTCA  1172
      || || ||||||| |||||||||  |||||||||
seq2  TGAACGTTTTGCCTCTGTATGGAACACCAAGTCA  1172