BAC Information

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BAC

Clone NameB6Ng01-342D23
Chromosome16 (Build37)
Map Location 66,308,079 - 66,500,098
singlet/doubletdoublet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2, 9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342D23.bB6Ng01-342D23.g
ACCGA125389GA125390
length7881,123
definitionB6Ng01-342D23.b B6Ng01-342D23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,308,079 - 66,308,863)(66,498,946 - 66,500,098)
sequence
gaattcattcctgacactgtaaatgaaaccaacaatatagatcgatcata
gaccaatcatagactgaacctaatactactgtctatgctaaacacacatt
gtgttaaataaaatgtctcccaaagactaattgttatccccacagaatag
tgcatttctcaatcctcatcaaaagagcatctcattgcagtcgatgggcc
actaacaaagagaactgtatcttgtcagtgtgcagatagatggtacagaa
ctgtagtgtgtcttatcctgctttattggaatagtctacagctcttatta
actatagtatcctattccagaaatattaacatctctatttttttaagttt
tcttttttaattttaattttattggttacccttcccaggtaaacacctta
tccccctcccccgttcccccgccccccagacttcttatgaggctggtcct
ccacccttccacccctcccacctcagtgccatagcatttccctaagctgc
atcatgtcatccatcctccacagggtcaagggtctcccctccccttgatg
ctagataaggccatcctctgcgacatatgcagctggagacatgggttcct
ccaggtatgctctttgattgggtaatctagaattgctcctgtcaaaatca
aatgcagggacaaagagtggagcagagactgaaggaaaggccatccagag
actgcccaaagtagggatccattccatctgcagacaccaaacccagacat
tgccgataccaagaagcattttgctgacaggaagctgg

gaattcctttaatattctttctgtgtttttaagaaacaatgataatattc
ctgttccaagggctttagaactcatctattctaattctggtatttgagag
acggagaggattgtacttaaagaaaaaaattattcctctactgcacaact
tgttggttatgaattagatctgcagctactttgcgtatcactatcaaaat
gaggtcacaatttgatgactctttgaaattggttttccgtatattgaaat
gttatattgggataatgtataatggaattctcagctgaaatattttaaga
attatccttcaaggctgacataaccttctagccatcttgattagatgcaa
cctaccacataattttattctttctctggcaagaactctctctgtgctaa
tattaattgctacttaaaatattttcaagatgccatatgacaaatataat
attctagttaaatcattttacagctggaacttcacaaattcacatacctc
atgttacagagattagaagatatgtctctaaacattcatttatatccaca
aatataaaaatcttttacatttgtaagaaaaagagatttcctgtccttta
actgtaatcttaatggaaattactagtcttgccttattttgtccctcccc
ccacccaccccggctctgtgtagatttccttggactttgtactattgtat
atctataaaaccatataaccagacaatttcctattacaaatcaataccat
tgatattgtctttaaatttggccataaaattaaagagaaaaatatctttt
cagtaaaaacaattatagaatatgtcacaccagtgtgaagtaaataaaac
ttatggcagttttacatatatttttaagaatatttctcattgtgttacaa
atagcactctgaattacccaaatgttacattattctaacaatggcatgtt
ctcaaagtttctctgagatatctgactaaattgaagcttcagtacagatg
tttccagaaattggcagatgcttctcacatactcaatgggtcatatgtag
attattcagagttagcagtaacctacctgaaagatctaaccgtatgatcc
atgtattaagagatcttgatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66308079_66308863
seq2: B6Ng01-342D23.b_48_835

seq1  GAATTCATTCCTGACACTGTAAATGAAACCAACAATATAGATCGATCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTGACACTGTAAATGAAACCAACAATATAGATCGATCATA  50

seq1  GACCAATCATAGACTGAACCTAATACTACTGTCTATGCTAAACACACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATCATAGACTGAACCTAATACTACTGTCTATGCTAAACACACATT  100

seq1  GTGTTAAATAAAATGTCTCCCAAAGACTAATTGTTATCCCCACAGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAATAAAATGTCTCCCAAAGACTAATTGTTATCCCCACAGAATAG  150

seq1  TGCATTTCTCAATCCTCATCAAAAGAGCATCTCATTGCAGTCGATGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCTCAATCCTCATCAAAAGAGCATCTCATTGCAGTCGATGGGCC  200

seq1  ACTAACAAAGAGAACTGTATCTTGTCAGTGTGCAGATAGATGGTACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACAAAGAGAACTGTATCTTGTCAGTGTGCAGATAGATGGTACAGAA  250

seq1  CTGTAGTGTGTCTTATCCTGCTTTATTGGAATAGTCTACAGCTCTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGTGTCTTATCCTGCTTTATTGGAATAGTCTACAGCTCTTATTA  300

seq1  ACTATAGTATCCTATTCCAGAAATATTAACATCTCTATTTTTTTAAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGTATCCTATTCCAGAAATATTAACATCTCTATTTTTTTAAGTTT  350

seq1  TCTTTTTTAATTTTAATTTTATTGGTTACCCTTCCCAGGTAAACACCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAATTTTAATTTTATTGGTTACCCTTCCCAGGTAAACACCTTA  400

seq1  TCCCCCTCCCCCGTTCCCCCGCCCCCCAGACTTCTTATGAGGCTGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCCCGTTCCCCCGCCCCCCAGACTTCTTATGAGGCTGGTCCT  450

seq1  CCACCCTTCCACCCCTCCCACCTCAGTGCCATAGCATTTCCCTAAGCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTCCACCCCTCCCACCTCAGTGCCATAGCATTTCCCTAAGCTGC  500

seq1  ATCATGTCATCCATCCTCCACAGGGTCAAGGGTCTCCCCTCCCCTTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCATCCATCCTCCACAGGGTCAAGGGTCTCCCCTCCCCTTGATG  550

seq1  CTAGATAAGGCCATCCTCTGCGACATATGCAGCTGGAGACATGGGTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAGGCCATCCTCTGCGACATATGCAGCTGGAGACATGGGTTCCT  600

seq1  CCAGGTATGCTCTTTGATT-GGTAATCCAGAATTGCTCCTGTCAAAATCA  649
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CCAGGTATGCTCTTTGATTGGGTAATCTAGAATTGCTCCTGTCAAAATCA  650

seq1  AATGCAGGGACAAAGAGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGGACAAAGAGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAG  700

seq1  ACTGCCCAAAGTAGGGATCCATTCCATCTGCAGACACCAAACCCAGACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCAAAGTAGGGATCCATTCCATCTGCAGACACCAAACCCAGACAT  750

seq1  TGCCGATACCAAGAAGCA-TTTGCTGACAGG-AGCTGG  785
      |||||||||||||||||| |||||||||||| ||||||
seq2  TGCCGATACCAAGAAGCATTTTGCTGACAGGAAGCTGG  788


seq1: chr16_66498946_66500098
seq2: B6Ng01-342D23.g_67_1189 (reverse)

seq1  AATATCAAGATCTCTATATTTACCCAATGGATCATTAACGTGTTAGATCT  50
      |||||||||||||||  |  |||   |||||||||  ||| |||||||||
seq2  AATATCAAGATCTCTTAA--TAC---ATGGATCAT--ACG-GTTAGATCT  42

seq1  TTCCAAGTAAGTTTTACTTGCTAACTCTTGAAATAAATCTTACCATAATG  100
      || || ||| |  |||| ||||||||| ||||   |||||   ||| |||
seq2  TT-CAGGTAGG--TTAC-TGCTAACTC-TGAA--TAATCT--ACAT-ATG  82

seq1  AACCCAATGAGGTTATGGTGAAGAAACCATCTTGCCAATTTCTGGAAACA  150
       ||||| ||||  ||| ||||   || |||| ||||||||||||||||||
seq2  -ACCCATTGAG--TAT-GTGA--GAAGCATC-TGCCAATTTCTGGAAACA  125

seq1  TCTTGTACTTGAAGCTTCAATTTAGTCAGATATCTTCAGAGAAACCTTTG  200
      || ||||| ||||||||||||||||||||||||| ||||||||| |||||
seq2  TC-TGTAC-TGAAGCTTCAATTTAGTCAGATATC-TCAGAGAAA-CTTTG  171

seq1  AGAACATGCCATTGTTTAGAATAATGTAACATTTTGGTAATTCAGAGTGC  250
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  AGAACATGCCATTG-TTAGAATAATGTAACATTTGGGTAATTCAGAGTGC  220

seq1  TATTTGTAACACAATGAGAAATATTCTTAAAAATATATGTAAAACTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAACACAATGAGAAATATTCTTAAAAATATATGTAAAACTGCCA  270

seq1  TAAGTTTTATTTACTTCACACTGGTGTGACATATTCTATAATTGTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTATTTACTTCACACTGGTGTGACATATTCTATAATTGTTTTTA  320

seq1  CTGAAAAGATATTTTTCTCTTTAATTTTATGGCCAAATTTAAAGACAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGATATTTTTCTCTTTAATTTTATGGCCAAATTTAAAGACAATA  370

seq1  TCAATGGTATTGATTTGTAATAGGAAATTGTCTGGTTATATGGTTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGTATTGATTTGTAATAGGAAATTGTCTGGTTATATGGTTTTATA  420

seq1  GATATACAATAGTACAAAGTCCAAGGAAATCTACACAGAGCCGGGGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAATAGTACAAAGTCCAAGGAAATCTACACAGAGCCGGGGTGGG  470

seq1  GGGGGGGAGGGACAAAATAAGGCAAGACTAGTAATTTCCATTAAGATTAC  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGAGGGACAAAATAAGGCAAGACTAGTAATTTCCATTAAGATTAC  520

seq1  AGTTAAAGGACAGGAAATCTCTTTTTCTTACAAATGTAAAAGATTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGGACAGGAAATCTCTTTTTCTTACAAATGTAAAAGATTTTTAT  570

seq1  ATTTGTGGATATAAATGAATGTTTAGAGACATATCTTCTAATCTCTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGATATAAATGAATGTTTAGAGACATATCTTCTAATCTCTGTAA  620

seq1  CATGAGGTATGTGAATTTGTGAAGTTCCAGCTGTAAAATGATTTAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTATGTGAATTTGTGAAGTTCCAGCTGTAAAATGATTTAACTAG  670

seq1  AATATTATATTTGTCATATGGCATCTTGAAAATATTTTAAGTAGCAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATATTTGTCATATGGCATCTTGAAAATATTTTAAGTAGCAATTA  720

seq1  ATATTAGCACAGAGAGAGTTCTTGCCAGAGAAAGAATAAAATTATGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCACAGAGAGAGTTCTTGCCAGAGAAAGAATAAAATTATGTGGT  770

seq1  AGGTTGCATCTAATCAAGATGGCTAGAAGGTTATGTCAGCCTTGAAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCATCTAATCAAGATGGCTAGAAGGTTATGTCAGCCTTGAAGGAT  820

seq1  AATTCTTAAAATATTTCAGCTGAGAATTCCATTATACATTATCCCAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTAAAATATTTCAGCTGAGAATTCCATTATACATTATCCCAATAT  870

seq1  AACATTTCAATATACGGAAAACCAATTTCAAAGAGTCATCAAATTGTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCAATATACGGAAAACCAATTTCAAAGAGTCATCAAATTGTGAC  920

seq1  CTCATTTTGATAGTGATACGCAAAGTAGCTGCAGATCTAATTCATAACCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTGATAGTGATACGCAAAGTAGCTGCAGATCTAATTCATAACCA  970

seq1  ACAAGTTGTGCAGTAGAGGAATAATTTTTTTCTTTAAGTACAATCCTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTGCAGTAGAGGAATAATTTTTTTCTTTAAGTACAATCCTCTC  1020

seq1  CGTCTCTCAAATACCAGAATTAGAATAGATGAGTTCTAAAGCCCTTGGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTCAAATACCAGAATTAGAATAGATGAGTTCTAAAGCCCTTGGAA  1070

seq1  CAGGAATATTATCATTGTTTCTTAAAAACACAGAAAGAATATTAAAGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATATTATCATTGTTTCTTAAAAACACAGAAAGAATATTAAAGGAA  1120

seq1  TTC  1153
      |||
seq2  TTC  1123


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