BAC Information

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BAC

Clone NameB6Ng01-342J04
Chromosome16 (Build37)
Map Location 54,085,949 - 54,192,666
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC433027
Downstream geneLOC100043442, LOC100043449, LOC667927, LOC436421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342J04.bB6Ng01-342J04.g
ACCGA125616GA125617
length1,0581,194
definitionB6Ng01-342J04.b B6Ng01-342J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,191,624 - 54,192,666)(54,085,949 - 54,087,164)
sequence
gaattcaccacaagtaactacaaaaaaaaatcttcccagattaagggtag
ctattgcatttgtctagagttagaaatgttcactaagtagcttgattcca
taacaatttagctaagcaacagtagtgacttcattcccaccttccaaaac
attcttttttttttttttttttttttttcttttatttctcagggatttgt
tttttttttttttttttttccattttttattaggtatttagctcatttac
atttccaatgctataccaaaagtcccccttacccacccacccccactccc
ctacccacccactccccccctttggccctggcgttcccctgggttccaaa
acattcttaacgattggattttgtcctggcttgtaggacaagggatgaat
tcaccgttgtgaaactgtcctctaatttaacaaaagaacattgggttcca
ctcatgacacctgggagattattatggcaggagtcacatcttatttgaca
gattagtattgcaaaccgtaggaacatgaaggcaataaattctcgtacac
taggataaagtcatatctttgctataacactataaggtttgtaaatattt
aatgcaacacaatagttacctagaaataatgatcattttaattaattgca
attcattagctgatcataaactgaaaatttgaggctattatattcaaata
ttaagatataagaccgattaatcaaactatatgtgaaattaactgtagcc
atattataaaatcagaaatatagagcaaattttcagttctacttttgaga
ttataattgaacattctactttttttccactcctcccaacccttcttatg
tttcttaccactgttcttcaacttcattagcccttactttagtaatgggt
tattaattgtataaacatatatgcagaacacatatattgctaatataacc
tactcagtcatattatatatattttttctttccaggattgacaattggaa
ttgttcagcatcattgggctcttcactggaaatgctactttcttgctcca
actttcct
gaattctcagctgatttttctgtatatgtttaaatcttcgaattaggctt
caataccagtgaagaaataaatgttctagcaacaagagggcaaccagaca
aagagtaaacactttcttcttctggatcatgctatagacttcttgtaaaa
ggtatggcctatattacaaatgtcttcctgcctcaagacttgtattgaaa
gtatgtgtctttctacatccagatcagaactaaaggactgtgtcttttag
ttttaatatccagatcaaaggtgcatgtcttccaggctcaagatctgggt
cacagatatgttttcctacattaaaggtctggactataagtagatttatc
catttcaatccaatcagaaatccctcacacatgtgccttccctttctgga
ttatagttcatttcagatatagtcatgctgacaatgaagaagttgactaa
tcacaggtatcatcaatatatggtaacaatatggaacaattacaagctat
acaaacaactaggtaactttgtaacaggtaacactgattaatgaatacag
ctcactctcagaatcagagatgtgatgctggaggaagctagcagaatcca
aatgagtaatccatggagtagagaggaactgacagagataaaaataggta
gagtccaagaaaggatcagttggtggcaataaggagcttatttagagatg
tctggaaaagacagttattcttcagttaggagcagagttgcaacagtgat
gagtgcaaaccttctggaaattaaattttaatatctgaaagctgaaggag
gaataatattcttcggccaaaattccagtctaaatcaagtgaatataata
ctctagaatataccttgtacttcaaatgtgtgagaagaaatgagaccatc
aaccaatgatttttatatataaactagttatatgaagatgttctattgga
caaaagcatagcagacatacctgagggtatagagacagatatcagcacaa
agttgattggtgtatgatagaaagttgtaagcagatatggtgtgtgtgtg
gtgtcatgtgtttcacttattctttttgctagtgcatattagcagttagt
ttgtattattgtcacttagtcatctcatgcatattctcaacactatttat
gactgaatccctttcacatacaaataccctcttacttaattcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54191624_54192666
seq2: B6Ng01-342J04.b_69_1102 (reverse)

seq1  AGGAAAGATGGGAGCAAGAAAGGTAGCATTTTCCAGTGAAGAGCACACTA  50
      ||||||| | ||||||||||| |||||| ||||||||||||||| || | 
seq2  AGGAAAG-TTGGAGCAAGAAA-GTAGCA-TTTCCAGTGAAGAGCCCAATG  47

seq1  ATTGCTTGAACAATTCCAAATTGTCAAT-CTTGAAAAAAAAAATATATAT  99
      | ||| ||||||||||| |||||||||| || |||| |||||||||||||
seq2  A-TGC-TGAACAATTCC-AATTGTCAATCCTGGAAAGAAAAAATATATAT  94

seq1  -ATATGACTGAGTAGGTTATATTTAGCAATATATGTGTTCTTGCATATAT  148
       |||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  AATATGACTGAGTAGGTTATA-TTAGCAATATATGTGTTC-TGCATATAT  142

seq1  GTTTATACATTTAATAA-CCATTACTAAAGTAGGGGCTAATGAAGTTGAA  197
      ||||||||| ||||||| |||||||||||||| |||||||||||||||||
seq2  GTTTATACAATTAATAACCCATTACTAAAGTAAGGGCTAATGAAGTTGAA  192

seq1  GAACAGTGGGTAAAGGAACATAAGAAGGTTTGGGA-GAGTGGAAAAAAAG  246
      |||||||||   ||| |||||||||||| |||||| ||||||||||||||
seq2  GAACAGTGG--TAAGAAACATAAGAAGGGTTGGGAGGAGTGGAAAAAAAG  240

seq1  TAGAAATGTTACAATTATAATCTCAAAAGTAGAACTGAAAATTTGCTCTA  296
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAG-AATGTT-CAATTATAATCTCAAAAGTAGAACTGAAAATTTGCTCTA  288

seq1  TATTTCTGATTTTATAATATTGGCTACAGTTAATTTCACATATAGTTTGA  346
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTTCTGATTTTATAATA-TGGCTACAGTTAATTTCACATATAGTTTGA  337

seq1  TTAATCGGTCTTATATCTTAATATTTGAATATAATAGCCTCAAATTTTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCGGTCTTATATCTTAATATTTGAATATAATAGCCTCAAATTTTCA  387

seq1  GTTTATGATCAGCTAATGAATTGCAATTAATTAAAATGATCATTATTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGATCAGCTAATGAATTGCAATTAATTAAAATGATCATTATTTCT  437

seq1  AGGTAACTATTGTGTTGCATTAAATATTTACAAACCTTATAGTGTTATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACTATTGTGTTGCATTAAATATTTACAAACCTTATAGTGTTATAG  487

seq1  CAAAGATATGACTTTATCCTAGTGTACGAGAATTTATTGCCTTCATGTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATATGACTTTATCCTAGTGTACGAGAATTTATTGCCTTCATGTTC  537

seq1  CTACGGTCTGCAATACTAATCTGTCAAATAAGATGTGACTCCTGCCATAA  596
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGTTTGCAATACTAATCTGTCAAATAAGATGTGACTCCTGCCATAA  587

seq1  TAATCTCCCAGGTGTCATGAGTGGAACACAATGTTCTTTTGTTAAATTAG  646
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAATCTCCCAGGTGTCATGAGTGGAACCCAATGTTCTTTTGTTAAATTAG  637

seq1  AGGACAGTTTCACAACGGTGAATTCATCCCTTGTCCTACAAGCCAGGACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTTTCACAACGGTGAATTCATCCCTTGTCCTACAAGCCAGGACA  687

seq1  AAATCCAATCGTTAAGAATGTTTTGGAACACAGGGGAACGCCAGGGCCAA  746
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAATCCAATCGTTAAGAATGTTTTGGAACCCAGGGGAACGCCAGGGCCAA  737

seq1  AGGGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAGGGGGAC  787

seq1  TTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAAT  837

seq1  GGAAAAAAAAAAAAAAAAAAAACAAATCCCTGAGAAATAAAAGAAAAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAAAAAAAAAAAACAAATCCCTGAGAAATAAAAGAAAAAAA  887

seq1  AAAAAAAAAAAAAAAAAGAATGTTTTGGAAGGTGGGAATGAAGTCACTAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGAATGTTTTGGAAGGTGGGAATGAAGTCACTAC  937

seq1  TGTTGCTTAGCTAAATTGTTATGGAATCAAGCTACTTAGTGAACATTTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTAGCTAAATTGTTATGGAATCAAGCTACTTAGTGAACATTTCT  987

seq1  AACTCTAGACAAATGCAATAGCTACCCTTAATCTGGGAAGATTTTTT  1043
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGACAAATGCAATAGCTACCCTTAATCTGGGAAGATTTTTT  1034

seq1: chr16_54085949_54087164
seq2: B6Ng01-342J04.g_68_1261

seq1  GAATTCTCAGCTGATTTTTCTGTATATGTTTAAATCTTCGAATTAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGATTTTTCTGTATATGTTTAAATCTTCGAATTAGGCTT  50

seq1  CAATACCAGTGAAGAAATAAATGTTCTAGCAACAAGAGGGCAACCAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCAGTGAAGAAATAAATGTTCTAGCAACAAGAGGGCAACCAGACA  100

seq1  AAGAGTAAACACTTTCTTCTTCTGGATCATGCTATAGACTTCTTGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAACACTTTCTTCTTCTGGATCATGCTATAGACTTCTTGTAAAA  150

seq1  GGTATGGCCTATATTACAAATGTCTTCCTGCCTCAAGACTTGTATTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGCCTATATTACAAATGTCTTCCTGCCTCAAGACTTGTATTGAAA  200

seq1  GTATGTGTCTTTCTACATCCAGATCAGAACTAAAGGACTGTGTCTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTCTTTCTACATCCAGATCAGAACTAAAGGACTGTGTCTTTTAG  250

seq1  TTTTAATATCCAGATCAAAGGTGCATGTCTTCCAGGCTCAAGATCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATCCAGATCAAAGGTGCATGTCTTCCAGGCTCAAGATCTGGGT  300

seq1  CACAGATATGTTTTCCTACATTAAAGGTCTGGACTATAAGTAGATTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATGTTTTCCTACATTAAAGGTCTGGACTATAAGTAGATTTATC  350

seq1  CATTTCAATCCAATCAGAAATCCCTCACACATGTGCCTTCCCTTTCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAATCCAATCAGAAATCCCTCACACATGTGCCTTCCCTTTCTGGA  400

seq1  TTATAGTTCATTTCAGATATAGTCATGCTGACAATGAAGAAGTTGACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTCATTTCAGATATAGTCATGCTGACAATGAAGAAGTTGACTAA  450

seq1  TCACAGGTATCATCAATATATGGTAACAATATGGAACAATTACAAGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTATCATCAATATATGGTAACAATATGGAACAATTACAAGCTAT  500

seq1  ACAAACAACTAGGTAACTTTGTAACAGGTAACACTGATTAATGAATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAACTAGGTAACTTTGTAACAGGTAACACTGATTAATGAATACAG  550

seq1  CTCACTCTCAGAATCAGAGATGTGATGCTGGAGGAAGCTAGCAGAATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTCAGAATCAGAGATGTGATGCTGGAGGAAGCTAGCAGAATCCA  600

seq1  AATGAGTAATCCATGGAGTAGAGAGGAACTGACAGAGATAAAAATAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTAATCCATGGAGTAGAGAGGAACTGACAGAGATAAAAATAGGTA  650

seq1  GAGTCCAAGAAAGGATCAGTTGGTGGCAATAAGGAGCTTATTTAGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAAGAAAGGATCAGTTGGTGGCAATAAGGAGCTTATTTAGAGATG  700

seq1  TCTGGAAAAGACAGTTATTCTTCAGTTAGGAGCAGAGTTGCAACAGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAGACAGTTATTCTTCAGTTAGGAGCAGAGTTGCAACAGTGAT  750

seq1  GAGTGCAAACCTTCTGGAAATTAAATTTTAATATCTGAAAGCTGAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAAACCTTCTGGAAATTAAATTTTAATATCTGAAAGCTGAAGGAG  800

seq1  GAATAATATTCTTCGGCCAAAATTCCAGTCTAAATCAAGTGAATATAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATATTCTTCGGCCAAAATTCCAGTCTAAATCAAGTGAATATAATA  850

seq1  CTCTAGAATATACCTTGTACTTCAAATGTGTGAGAAGAAATGAGACCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAATATACCTTGTACTTCAAATGTGTGAGAAGAAATGAGACCATC  900

seq1  AAACCAATGATTTTTATATATAAAACTAGTTATATGAAGATGTTCTATTG  950
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -AACCAATGATTTTTATATAT-AAACTAGTTATATGAAGATGTTCTATTG  948

seq1  GAACAAAAAGCATAGCAGACATACCTGAGGGTATAGAAGACAGATATCAG  1000
      ||   ||||||||||||||||||||||||||||||| |||||||||||||
seq2  GA--CAAAAGCATAGCAGACATACCTGAGGGTATAG-AGACAGATATCAG  995

seq1  GCAACAAAGTTGATT-GTGTATGATAGAAAGTTGGTAAGCAGAATAATGT  1049
         |||||||||||| ||||||||||||||||| |||||||| |||  ||
seq2  --CACAAAGTTGATTGGTGTATGATAGAAAGTT-GTAAGCAG-ATATGGT  1041

seq1  GTGTGTGT-GTGTCAATGTGTTTCCAACTTA-TCTTTTTGCTTAAGTGCA  1097
      |||||||| ||||| |||||||||  ||||| ||||||||||  ||||||
seq2  GTGTGTGTGGTGTC-ATGTGTTTC--ACTTATTCTTTTTGCT--AGTGCA  1086

seq1  TATTAGCAAGTTTAGTTTGTAATA-TGTCAACTTAGTCATCTCATGCATA  1146
      ||||||||   |||||||||| || |||| ||||||||||||||||||||
seq2  TATTAGCA--GTTAGTTTGTATTATTGTC-ACTTAGTCATCTCATGCATA  1133

seq1  -TCTCAAACACTATTTTATTGAACTTAAAATCCTCTTCTCACTATCAAAA  1195
       |||| ||||||| |||||   |||   ||||| ||| |||| ||  |||
seq2  TTCTC-AACACTA-TTTAT--GACT--GAATCC-CTT-TCAC-ATACAAA  1174

seq1  TACCCTC-TACTTTAAATTCAA  1216
      ||||||| |||||  |||||||
seq2  TACCCTCTTACTT--AATTCAA  1194