BAC Information

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BAC

Clone NameB6Ng01-343I10
Chromosome16 (Build37)
Map Location 42,170,238 - 42,310,078
singlet/doubletdoublet
Overlap geneGap43
Upstream geneEG667450, Lsamp
Downstream geneBC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343I10.bB6Ng01-343I10.g
ACCGA126279GA126280
length1,1941,120
definitionB6Ng01-343I10.b B6Ng01-343I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,170,238 - 42,171,444)(42,308,959 - 42,310,078)
sequence
gaattccaaaaataattttcttttgtataattgaaacacaaacattaata
ctgatccgaatctctcattggctgcaatggacacccggggatcattgtgg
acatggttaaagacgactttaaataaattcagtcacaatgggtggaaaaa
agaggaaaccatcactgatctgtgcattaagaagtgtcgccaaaatagat
ggttgaagaaaaacactttgtgaaatctttgagtctttatgaaaaagcaa
aacgatgatctcagaatcctacattggatcagcaggagagaaacttggcc
ccctccaaaaaatccttttcattcatttcaggatatttaataaactttgc
cataaatccaggttttgcccttttacgagcatggtcacgaaaagatacaa
tttagtactcatcttagcagggtcctttagctgattcggagaaccttggg
aatgttaatttctgatttattattttgctgcaggtaaattttgcctttac
tctaataagccttaaaagcctccagccagtacaggctcagtggctcagtg
ggtaaagtcacttgctgctaagccaaaggacccgagtttggtccccaggg
ccacatgggcaaagagaagagttcgttcccctctggccacacacatttga
tgacttgcaagcatatacaaacataatacacacataataaataaataaga
ccgtttgcttgtttttgacttaagcctgatccaaattacaaatatctttg
attagagttggtatttcattcatttctgataccaaaatttctgtgttgtg
aataatataagaaatagttaccaagtgccacacatgccaaaatgtgtgtg
tgtttataatgcccacatagatatggtaaaatatcctggtgtgattgttc
tctgtgatatgaaaaccatgtaacaagcttttgaactgtgcacctatttg
cctgctcctaaggctaagttgtgtttgcagacttgtgctttcgtgatggc
tctcagtatatgcaagcacttgctgagcgtggcatctggcacaggaacta
agatttatcattgcatttcagcaataagcagattttcataactaagacta
aacatattatgattggtggattatctccctgacctagcaattactgagta
gtctctatggcatcgattgcatctactattgcaatactaacttg

gaattctcttcggttctggaatgtgcccacagtcagagactatgaaaatt
cagtgagacgtccagcaggaaagtctggggagacctaggaaatgattcta
gtgatgtgatgcatttcttattcatcagattttaactttctctgctgatg
ttagacaaacctcaatattcaaaggagacggcaaccggtttttttgtttc
tagagtttttcaggcaagaagtaggctctacactgagagcaggatgagaa
gtcacgcaagccccacggacctttgagcaagtgcactttagatgtcaaca
agacttcagcgaggtctgattgcatcagagtaatcaaacttttggcctgt
gcacagcagataattttttttaatataccactgaaaagtctggcagggat
cctaaaacctggagtctcgtagctcatgtcatatacctctaacaccttgg
agaaaataaatcagatggcagtgttcctactagtgaatttattgtctttg
tagcaatttgctctccccaggatgcatgtcaacaatgaatatatagcagt
caagatcatcctgaatgtcaaagaaacatcattcaactcgcggtagtaaa
acaattgactaaaaaatgtctgttaccacagattacatcaccagcatcct
cacctccttcactctgcatacatttcattttggtcttaaactatggcgag
cagtgtgtcggggatgttgcactaggatcctgcatttgcctgaagggtga
aacgtaccctggatgggggggggcgctatctgtatttctccacgtactga
aactttgtagaagactaataggtagcctataacttagtagatttgatgaa
acagtgagagttaatttgcatttatattgggtattatagtcaaggaaatt
atgcaacaggagcttttctcctggggcaggaagcataatctgctctgttc
aggccacactcttcagctttccttagcccatcgtcaccacacagaagcac
caaccaagtctcatgattgaaatgtagcagaggaacagcctgtctgctaa
tctgtatcttttcaggcccagaaatgggaagataaataaatttgagacct
tgctaatgcctaagctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42170238_42171444
seq2: B6Ng01-343I10.b_44_1237

seq1  GAATTCCAAAAATAATTTTCTTTTGTATAATTGAAACACAAACATTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAATAATTTTCTTTTGTATAATTGAAACACAAACATTAATA  50

seq1  CTGATCCGAATCTCTCATTGGCTGCAATGGACACCCGGGGATCATTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCGAATCTCTCATTGGCTGCAATGGACACCCGGGGATCATTGTGG  100

seq1  ACATGGTTAAAGACGACTTTAAATAAATTCAGTCACAATGGGTGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTAAAGACGACTTTAAATAAATTCAGTCACAATGGGTGGAAAAA  150

seq1  AGAGGAAACCATCACTGATCTGTGCATTAAGAAGTGTCGCCAAAATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAACCATCACTGATCTGTGCATTAAGAAGTGTCGCCAAAATAGAT  200

seq1  GGTTGAAGAAAAACACTTTGTGAAATCTTTGAGTCTTTATGAAAAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGAAAAACACTTTGTGAAATCTTTGAGTCTTTATGAAAAAGCAA  250

seq1  AACGATGATCTCAGAATCCTACATTGGATCAGCAGGAGAGAAACTTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGATGATCTCAGAATCCTACATTGGATCAGCAGGAGAGAAACTTGGCC  300

seq1  CCCTCCAAAAAATCCTTTTCATTCATTTCAGGATATTTAATAAACTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAAAAAATCCTTTTCATTCATTTCAGGATATTTAATAAACTTTGC  350

seq1  CATAAATCCAGGTTTTGCCCTTTTACGAGCATGGTCACGAAAAGATACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCCAGGTTTTGCCCTTTTACGAGCATGGTCACGAAAAGATACAA  400

seq1  TTTAGTACTCATCTTAGCAGGGTCCTTTAGCTGATTCGGAGAACCTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACTCATCTTAGCAGGGTCCTTTAGCTGATTCGGAGAACCTTGGG  450

seq1  AATGTTAATTTCTGATTTATTATTTTGCTGCAGGTAAATTTTGCCTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAATTTCTGATTTATTATTTTGCTGCAGGTAAATTTTGCCTTTAC  500

seq1  TCTAATAAGCCTTAAAAGCCTCCAGCCAGTACAGGCTCAGTGGCTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAGCCTTAAAAGCCTCCAGCCAGTACAGGCTCAGTGGCTCAGTG  550

seq1  GGTAAAGTCACTTGCTGCTAAGCCAAAGGACCCGAGTTTGGTCCCCAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTCACTTGCTGCTAAGCCAAAGGACCCGAGTTTGGTCCCCAGGG  600

seq1  CCACATGGGCAAAGAGAAGAGTTCGTTCCCCTCTGGCCACACACATTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGGCAAAGAGAAGAGTTCGTTCCCCTCTGGCCACACACATTTGA  650

seq1  TGACTTGCAAGCATATACAAACATAATACACACATAATAAATAAATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCAAGCATATACAAACATAATACACACATAATAAATAAATAAGA  700

seq1  CCGTTTGCTTGTTTTTGACTTAAGCCTGATCCAAATTACAAATATCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTGCTTGTTTTTGACTTAAGCCTGATCCAAATTACAAATATCTTTG  750

seq1  ATTAGAGTTGGTATTTCATTCATTTCTGATACCAAAATTTCTGTGTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGTTGGTATTTCATTCATTTCTGATACCAAAATTTCTGTGTTGTG  800

seq1  AATAATATAAGAAATAGTTACCAAGTGCCACACATGCCAAAATGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATAAGAAATAGTTACCAAGTGCCACACATGCCAAAATGTGTGTG  850

seq1  TGTTTATAATGCCCACATAGATATGGTAAAATATCCTGGTGTGATTGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAATGCCCACATAGATATGGTAAAATATCCTGGTGTGATTGTTC  900

seq1  TCTGTGATATGAAAACCATGTAACAAGCTTTTGAACTGTGCACCTATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATATGAAAACCATGTAACAAGCTTTTGAACTGTGCACCTATTTG  950

seq1  CCTGCTCCTAAGGCTAAGTTGTGTTTGCAGACTTGTGCTTTCGTGATGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCTAAGGCTAAGTTGTGTTTGCAGACTTGTGCTTTCGTGATGGC  1000

seq1  TCTCAGTATATGCAAGCACTTGCTGAGCGTGGCCATCTGGCACAGGAACT  1050
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCAGTATATGCAAGCACTTGCTGAGCGTGG-CATCTGGCACAGGAACT  1049

seq1  AAGATTTATCATTTGCATTTCAGCAAATAAGCAGAATTTCATAACTAGGA  1100
      ||||||||||| |||||||||||| |||||||||| ||||||||||| | 
seq2  AAGATTTATCA-TTGCATTTCAGC-AATAAGCAGATTTTCATAACTAAG-  1096

seq1  ACTAAAACATAATTAATGATTTGGTGGATTATCCTTCCCTGAACTAGCCA  1150
      ||| |||||||  | |||| |||||||||||||  ||||||| ||||| |
seq2  ACT-AAACATA--TTATGA-TTGGTGGATTATC--TCCCTGACCTAGCAA  1140

seq1  TTAACTGGAGTAGTCTCCTATGCAATCGTATGCATCTATAATTGCATACC  1200
      || ||| ||||||||| |||||  ||||  ||||||||  ||||||   |
seq2  TT-ACT-GAGTAGTCT-CTATGGCATCGATTGCATCTACTATTGCAATAC  1187

seq1  TAACTTG  1207
      |||||||
seq2  TAACTTG  1194


seq1: chr16_42308959_42310078
seq2: B6Ng01-343I10.g_62_1181 (reverse)

seq1  CTGTAGCCTAAGGCATTAGGCAAGTCTC-AATTTA-TTATCCTTCCA-TT  47
      |||||| || |||||||||  | ||||| |||||| ||||| | ||| ||
seq2  CTGTAG-CTTAGGCATTAGCAAGGTCTCAAATTTATTTATCTTCCCATTT  49

seq1  CTGGGCCTG-AAAGATACAGATTAGCAGACAGGCTGGTTCCTCTGCTACA  96
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CTGGGCCTGAAAAGATACAGATTAGCAGACAGGCT-GTTCCTCTGCTACA  98

seq1  TTTCAATCATGGAGACTTGGTTTGGTGCTTCTGTGTGGTGACGATGGGCT  146
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  TTTCAATCAT-GAGACTTGG-TTGGTGCTTCTGTGTGGTGACGATGGGCT  146

seq1  AAGGAAAGCTGAAGAGTGTGGCCTGAACAGAGCAGATTATGCTTCCTGCC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCTGAAGAGTGTGGCCTGAACAGAGCAGATTATGCTTCCTGCC  196

seq1  CCAGGAGAAAAGCTCCTGTTGCATAATTTCCTTGACTATAATACCCAATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAAAGCTCCTGTTGCATAATTTCCTTGACTATAATACCCAATA  246

seq1  TAAATGCAAATTAACTCTCACTGTTTCATCAAATCTACTAAGTTATAGGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAAATTAACTCTCACTGTTTCATCAAATCTACTAAGTTATAGGC  296

seq1  TACCTATTAGTCTTCTACAAAGTTTCAGTACGTGGAGAAATACAGATAGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATTAGTCTTCTACAAAGTTTCAGTACGTGGAGAAATACAGATAGC  346

seq1  GCCCCCCCCCATCCAGGGTACGTTTCACCCTTCAGGCAAATGCAGGATCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCCCCATCCAGGGTACGTTTCACCCTTCAGGCAAATGCAGGATCC  396

seq1  TAGTGCAACATCCCCGACACACTGCTCGCCATAGTTTAAGACCAAAATGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAACATCCCCGACACACTGCTCGCCATAGTTTAAGACCAAAATGA  446

seq1  AATGTATGCAGAGTGAAGGAGGTGAGGATGCTGGTGATGTAATCTGTGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGCAGAGTGAAGGAGGTGAGGATGCTGGTGATGTAATCTGTGGT  496

seq1  AACAGACATTTTTTAGTCAATTGTTTTACTACCGCGAGTTGAATGATGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACATTTTTTAGTCAATTGTTTTACTACCGCGAGTTGAATGATGTT  546

seq1  TCTTTGACATTCAGGATGATCTTGACTGCTATATATTCATTGTTGACATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACATTCAGGATGATCTTGACTGCTATATATTCATTGTTGACATG  596

seq1  CATCCTGGGGAGAGCAAATTGCTACAAAGACAATAAATTCACTAGTAGGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGGGAGAGCAAATTGCTACAAAGACAATAAATTCACTAGTAGGA  646

seq1  ACACTGCCATCTGATTTATTTTCTCCAAGGTGTTAGAGGTATATGACATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCATCTGATTTATTTTCTCCAAGGTGTTAGAGGTATATGACATG  696

seq1  AGCTACGAGACTCCAGGTTTTAGGATCCCTGCCAGACTTTTCAGTGGTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACGAGACTCCAGGTTTTAGGATCCCTGCCAGACTTTTCAGTGGTAT  746

seq1  ATTAAAAAAAATTATCTGCTGTGCACAGGCCAAAAGTTTGATTACTCTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAATTATCTGCTGTGCACAGGCCAAAAGTTTGATTACTCTGA  796

seq1  TGCAATCAGACCTCGCTGAAGTCTTGTTGACATCTAAAGTGCACTTGCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCAGACCTCGCTGAAGTCTTGTTGACATCTAAAGTGCACTTGCTC  846

seq1  AAAGGTCCGTGGGGCTTGCGTGACTTCTCATCCTGCTCTCAGTGTAGAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCGTGGGGCTTGCGTGACTTCTCATCCTGCTCTCAGTGTAGAGC  896

seq1  CTACTTCTTGCCTGAAAAACTCTAGAAACAAAAAAACCGGTTGCCGTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCTTGCCTGAAAAACTCTAGAAACAAAAAAACCGGTTGCCGTCTC  946

seq1  CTTTGAATATTGAGGTTTGTCTAACATCAGCAGAGAAAGTTAAAATCTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATATTGAGGTTTGTCTAACATCAGCAGAGAAAGTTAAAATCTGA  996

seq1  TGAATAAGAAATGCATCACATCACTAGAATCATTTCCTAGGTCTCCCCAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGAAATGCATCACATCACTAGAATCATTTCCTAGGTCTCCCCAG  1046

seq1  ACTTTCCTGCTGGACGTCTCACTGAATTTTCATAGTCTCTGACTGTGGGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTGCTGGACGTCTCACTGAATTTTCATAGTCTCTGACTGTGGGC  1096

seq1  ACATTCCAGAACCGAAGAGAATTC  1120
      ||||||||||||||||||||||||
seq2  ACATTCCAGAACCGAAGAGAATTC  1120


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