BAC Information

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BAC

Clone NameB6Ng01-343N09
Chromosome16 (Build37)
Map Location 75,934,587 - 76,079,990
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
Downstream gene4930578N18Rik, LOC100039457, Nrip1, LOC100039316, 1700063K16Rik, LOC665120, Usp25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343N09.bB6Ng01-343N09.g
ACCGA126505GA126506
length9891,150
definitionB6Ng01-343N09.b B6Ng01-343N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,079,002 - 76,079,990)(75,934,587 - 75,935,745)
sequence
gaattcattcattctccatatatttaatctctgtgtgaaacactgtctta
agtgtggtaagaaacacaaaggagtctaataaaatattctacagagagtg
agcaaggatctctgtcttcgaagtacatttgctactatgcagagagcctt
ctttctgtatcacttaggcaaactcaggaccaaactcagtgttcagacag
ctgctacggtaacttgcaggaagacaggcttgcagcatgcttcttcccct
ttgcttagttaccctgttagaggtagcccggccctaacaaggcctcctta
gcatgtcgcatagttaggttgacatactttagaaagcatggtaaacaaaa
aagaatgataggcagactctcagggaaaaaaatcccaaggctctcaaatg
agttgatcatttagtataaatgataggaattgagccagtgaaagaggcgt
gggtgtggcagatgacaaatatcctctcctgactaaactcagatttacag
aaactaatttcaatcttttcacctctgtgtgtgtctttccaaagtctgat
ttgggcagaaatgctggcaagacaacttagcttcccttcattcttggccg
ttcctgatgtctgattccttgttcaccaccatgttcaaggcaatgacaga
tcgtaatggcttccctccagcaaacatcctgcttaccttccaggagggag
gagttagaattcttccttttactcttcttacattatctcttactagtttt
ccatctattgacttccatctggtctcttggcttttagttcctttctgtgt
tgtgtttagagttgagtccacagcagaagttcactggggagctctttgtg
ctactcaaaaccaacttcccctaaaacatctgcactatcatttgaagaag
gcatcattgagtcaattcatgacagagacagagagagagagagaaagaga
gagagagagagagagagagagagagagagagagagagag

gaattccatctgagttctgtttttctaacttacattatgagggttttgtg
gttgagaagtgccaaacttcaaccccccaaattagactggcttgatggct
ctattgttatgtctcaaaagtttatgttagaatatctctatttaccttgg
actttgagactattacttcaaacagagcaattaccctttctcactttatc
tggatttcatactgtaaaatattttatttggaatgacatttaaacatttt
atatgcatttagaaattactttcctcaaattcaacctaaagaatttccca
taaacctgacaatatataatgttacatttcttggcattttaaatatttct
ttcaaaggcttattttttaagaatataaaatatgtttacatgtctggtta
gatgttccccaggatacttgatatgtatacagataatgcaggatctttgt
agtctagtgggtgtttacacaaaggaatgtacttacatattttctgtttt
aaacacttccattaaataagatagcacagactatccactataaatatgaa
atagtagctcatttgcctaccactcctcccaaacctactcgtatccccct
agcctctcagggtcatacactgagtggctcaggcacttggtaagaatttg
ttatataaggaaataatgaatggatgaatatgttgtctttaaattcttct
cttgggtagatgctgattctccctccatgaagcactatattgacaataat
taaaagtgtgtcatgaagattattcataattaatgctttgttcatgttca
tttaaaagtatatttagatttatttttgaggttcattcctttcagtgctg
agtgcaggaagtgtaactgtctttttgaatcatgcattctgtttttcctt
tcaatgtttcagttcatatagttatttgcaatgacttagtttttcacttt
cttcaatctctcagtaatctgctcatcctatcacatcatataccagcata
gaacaaagttacactcaagcaacaagtgatcttaatgacttagagtggaa
catgacatataaacatgtgttagtaacacatggatcaaaaaaaaaaaaac
ttcttttcatgagaaccacagacatttttaatagaaccttaactcatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76079002_76079990
seq2: B6Ng01-343N09.b_47_1035 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCT  50

seq1  CTCTCTCTCTGTCTCTGTCATGAATTGACTCAATGATGCCTTCTTCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTGTCTCTGTCATGAATTGACTCAATGATGCCTTCTTCAAAT  100

seq1  GATAGTGCAGATGTTTTAGGGGAAGTTGGTTTTGAGTAGCACAAAGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGCAGATGTTTTAGGGGAAGTTGGTTTTGAGTAGCACAAAGAGCT  150

seq1  CCCCAGTGAACTTCTGCTGTGGACTCAACTCTAAACACAACACAGAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGAACTTCTGCTGTGGACTCAACTCTAAACACAACACAGAAAGG  200

seq1  AACTAAAAGCCAAGAGACCAGATGGAAGTCAATAGATGGAAAACTAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGCCAAGAGACCAGATGGAAGTCAATAGATGGAAAACTAGTAA  250

seq1  GAGATAATGTAAGAAGAGTAAAAGGAAGAATTCTAACTCCTCCCTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATGTAAGAAGAGTAAAAGGAAGAATTCTAACTCCTCCCTCCTGG  300

seq1  AAGGTAAGCAGGATGTTTGCTGGAGGGAAGCCATTACGATCTGTCATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGCAGGATGTTTGCTGGAGGGAAGCCATTACGATCTGTCATTGC  350

seq1  CTTGAACATGGTGGTGAACAAGGAATCAGACATCAGGAACGGCCAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACATGGTGGTGAACAAGGAATCAGACATCAGGAACGGCCAAGAAT  400

seq1  GAAGGGAAGCTAAGTTGTCTTGCCAGCATTTCTGCCCAAATCAGACTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGCTAAGTTGTCTTGCCAGCATTTCTGCCCAAATCAGACTTTG  450

seq1  GAAAGACACACACAGAGGTGAAAAGATTGAAATTAGTTTCTGTAAATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACACACACAGAGGTGAAAAGATTGAAATTAGTTTCTGTAAATCTG  500

seq1  AGTTTAGTCAGGAGAGGATATTTGTCATCTGCCACACCCACGCCTCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGTCAGGAGAGGATATTTGTCATCTGCCACACCCACGCCTCTTTC  550

seq1  ACTGGCTCAATTCCTATCATTTATACTAAATGATCAACTCATTTGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTCAATTCCTATCATTTATACTAAATGATCAACTCATTTGAGAGC  600

seq1  CTTGGGATTTTTTTCCCTGAGAGTCTGCCTATCATTCTTTTTTGTTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATTTTTTTCCCTGAGAGTCTGCCTATCATTCTTTTTTGTTTACC  650

seq1  ATGCTTTCTAAAGTATGTCAACCTAACTATGCGACATGCTAAGGAGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTAAAGTATGTCAACCTAACTATGCGACATGCTAAGGAGGCCT  700

seq1  TGTTAGGGCCGGGCTACCTCTAACAGGGTAACTAAGCAAAGGGGAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGCCGGGCTACCTCTAACAGGGTAACTAAGCAAAGGGGAAGAAG  750

seq1  CATGCTGCAAGCCTGTCTTCCTGCAAGTTACCGTAGCAGCTGTCTGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGCAAGCCTGTCTTCCTGCAAGTTACCGTAGCAGCTGTCTGAACA  800

seq1  CTGAGTTTGGTCCTGAGTTTGCCTAAGTGATACAGAAAGAAGGCTCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGGTCCTGAGTTTGCCTAAGTGATACAGAAAGAAGGCTCTCTG  850

seq1  CATAGTAGCAAATGTACTTCGAAGACAGAGATCCTTGCTCACTCTCTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAGCAAATGTACTTCGAAGACAGAGATCCTTGCTCACTCTCTGTA  900

seq1  GAATATTTTATTAGACTCCTTTGTGTTTCTTACCACACTTAAGACAGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTTATTAGACTCCTTTGTGTTTCTTACCACACTTAAGACAGTGT  950

seq1  TTCACACAGAGATTAAATATATGGAGAATGAATGAATTC  989
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGAGATTAAATATATGGAGAATGAATGAATTC  989


seq1: chr16_75934587_75935745
seq2: B6Ng01-343N09.g_69_1218

seq1  GAATTCCATCTGAGTTCTGTTTTTCTAACTTACATTATGAGGGTTTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGAGTTCTGTTTTTCTAACTTACATTATGAGGGTTTTGTG  50

seq1  GTTGAGAAGTGCCAAACTTCAACCCCCCAAATTAGACTGGCTTGATGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAGTGCCAAACTTCAACCCCCCAAATTAGACTGGCTTGATGGCT  100

seq1  CTATTGTTATGTCTCAAAAGTTTATGTTAGAATATCTCTATTTACCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTATGTCTCAAAAGTTTATGTTAGAATATCTCTATTTACCTTGG  150

seq1  ACTTTGAGACTATTACTTCAAACAGAGCAATTACCCTTTCTCACTTTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGACTATTACTTCAAACAGAGCAATTACCCTTTCTCACTTTATC  200

seq1  TGGATTTCATACTGTAAAATATTTTATTTGGAATGACATTTAAACATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCATACTGTAAAATATTTTATTTGGAATGACATTTAAACATTTT  250

seq1  ATATGCATTTAGAAATTACTTTCCTCAAATTCAACCTAAAGAATTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATTTAGAAATTACTTTCCTCAAATTCAACCTAAAGAATTTCCCA  300

seq1  TAAACCTGACAATATATAATGTTACATTTCTTGGCATTTTAAATATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGACAATATATAATGTTACATTTCTTGGCATTTTAAATATTTCT  350

seq1  TTCAAAGGCTTATTTTTTAAGAATATAAAATATGTTTACATGTCTGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGCTTATTTTTTAAGAATATAAAATATGTTTACATGTCTGGTTA  400

seq1  GATGTTCCCCAGGATACTTGATATGTATACAGATAATGCAGGATCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCCCAGGATACTTGATATGTATACAGATAATGCAGGATCTTTGT  450

seq1  AGTCTAGTGGGTGTTTACACAAAGGAATGTACTTACATATTTTCTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTGGGTGTTTACACAAAGGAATGTACTTACATATTTTCTGTTTT  500

seq1  AAACACTTCCATTAAATAAGATAGCACAGACTATCCACTATAAATATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTCCATTAAATAAGATAGCACAGACTATCCACTATAAATATGAA  550

seq1  ATAGTAGCTCATTTGCCTACCACTCCTCCCAAACCTACTCGTATCCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGCTCATTTGCCTACCACTCCTCCCAAACCTACTCGTATCCCCCT  600

seq1  AGCCTCTCAGGGTCATACACTGAGTGGCTCAGGCACTTGGTAAGAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCAGGGTCATACACTGAGTGGCTCAGGCACTTGGTAAGAATTTG  650

seq1  TTATATAAGGAAATAATGAATGGATGAATATGTTGTCTTTAAATTCTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAGGAAATAATGAATGGATGAATATGTTGTCTTTAAATTCTTCT  700

seq1  CTTGGGTAGATGCTGATTCTCCCTCCATGAAGCACTATATTGACAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTAGATGCTGATTCTCCCTCCATGAAGCACTATATTGACAATAAT  750

seq1  TAAAAGTGTGTCATGAAGATTATTCATAATTAATGCTTTGTTCATGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGTGTCATGAAGATTATTCATAATTAATGCTTTGTTCATGTTCA  800

seq1  TTTAAAAGTATATTTAGATTTATTTTTGAGGTTCATTCCTTTCAGTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTATATTTAGATTTATTTTTGAGGTTCATTCCTTTCAGTGCTG  850

seq1  AGTGCAGGAAGTGTAACTGTCTTTTTGAATCATGCATTCTGTTTTTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAGGAAGTGTAACTGTCTTTTTGAATCATGCATTCTGTTTTTCCTT  900

seq1  TCAAATGTTTCAGTTCATATAGTTATTTGCAATGACTTTAGTTTTTCACT  950
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TC-AATGTTTCAGTTCATATAGTTATTTGCAATGAC-TTAGTTTTTCACT  948

seq1  TTCTTCAAATCTCTCAGTAAATCTGCTCATCCTATCACATCATAATACCA  1000
      |||||| ||||||||||| |||||||||||||||||||||||| ||||||
seq2  TTCTTC-AATCTCTCAGT-AATCTGCTCATCCTATCACATCAT-ATACCA  995

seq1  GCATAG-ACAAAGTTTACAACTCAAGCAACAAGTGATTCTTAATGACTTA  1049
      |||||| |||||| |||| ||||||||||||||||| |||||||||||||
seq2  GCATAGAACAAAG-TTAC-ACTCAAGCAACAAGTGA-TCTTAATGACTTA  1042

seq1  GAGTTGGAACATGACATATTAAACATGTGTTAGT-ACACATTGGATCAAA  1098
      ||| |||||||||||||| ||||||||||||||| ||||| ||||||  |
seq2  GAG-TGGAACATGACATA-TAAACATGTGTTAGTAACACA-TGGATC--A  1087

seq1  AAAAAAAAAAAAACTCTTTTCAATGAG-ACCACAGACATTTTTTATAAGA  1147
      ||||||||||||  ||||||| ||||| ||||||||||||||| || |||
seq2  AAAAAAAAAAAACTTCTTTTC-ATGAGAACCACAGACATTTTTAAT-AGA  1135

seq1  ACCTAA---CATCAT  1159
      |||| |   ||||||
seq2  ACCTTAACTCATCAT  1150


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