BAC Information

Click to search

BAC

Clone NameB6Ng01-343P05
Chromosome16 (Build37)
Map Location 54,652,051 - 54,652,943
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433027, LOC100043442
Downstream geneLOC100043449, LOC667927, LOC436421, Zpld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343P05.bB6Ng01-343P05.g
ACCGA126585GA126586
length1,2571,087
definitionB6Ng01-343P05.b B6Ng01-343P05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgcttctaactgtccttgttgattacctgtccctgctttcga
gtgttaaaataactggcagctgtcacatatgctcagctttttatgggttc
taaagatttgaagtctgaccttcacactttatgaccagtatctatagcca
tagaatatctctccgatctcttagttgacagttttaacttacagacattc
atatcaacaacttggatatgaactttaaagaatcaccattctatggcagt
actacctaccctaggatagactaacctgatgaccactgatgatgaatcat
tgatagggaaacattcaatatttaatttcttcattttgggtaattgtctt
cgtcaaggttttattgatgtgaagagatgtcatgatcatggaaactcata
tataggaaacattaaattggggctggcttacagtatcagccatttaggtc
tttatcatcataatagggaacaaggtagcattcatgaagacatggtgctt
gggaaactgtgatttttttacatacagatccacaagcagcattaatagag
agatgctgtgaaactgcaaagcccactcccagtgacacactttctccaac
aaggccacaccttctaatctctctaaagtagcaccacttcctaatgacca
agcatcaaatatataaacctatgggcttctttctgatttaacaaccacag
taatcaaaccaatgtgtttttgtagaagcatgaaattgtccctgcattaa
aacaagacaaaacaaaaaaccaaaaaaacctaaccacccctccccccaaa
acccaaacaaaacaaaaacaaaacaaacaacaaaacctactgtaatcctt
caattacattggcttgcactagagcttaagtttctccggaagctttgaat
tatgtgtggtgtgaccgaatacagagccaagtgagcatgctgtttattct
gagccaatggtttagtgaagttctgtgatgtagcatgaaagatgctgcca
gaaatatgtaggaattattgtgtttgtttttattcattcagctgtttcat
attcagaaaaacttttaaggttgccaaactttcagaaccttaccacattc
catttagaaatgcccatagtgattatataattccggtgtaggggaggctg
ctcaagcccatgaggtggcctatggaatatgaaaagaacctgcagttatt
caggaatgcctatcagggtaattaggagattcggatagtttgtggatagc
ttatcac

gaattctcacctgaggaataccgaatggtagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggattcaggtgtacttttaaatcat
tagctggagaactcaccaattactatgcactttatccttagaactccttt
aattgtgtcccataagtttgggtgtgttgtgccttcgttttcattgaatt
ctagaaagtctttaatatgggacttctaacaagtggaacaggggctatgt
tggcctctgttccccaccattggatctcatttcccttacctggactgcct
aactgggcttcagttgaagaggatatgcctagtcttgctgggatgagatg
tccagggtagggtggtagccaagcaatgggtttccccttctgtgaggaaa
aagggaggaggcaatgggggagaggaatttgtaagagtaggactgtgagg
agaggagggaagaagtctgtgatgggaacataaaatgaataaaaataatt
attggagaaaagtacgtatcaaaaattgttagatattgcctattcctttt
tagtttttccatgaatatggaatgtgcttgattagcaggggttagtcaca
tgacaaagaagacctacagataagagtagatgtggtgacatatacctgtc
atgccagcacatgggaaccaaagagaaagatgttttgttttatgtcagca
tggtttactctaataagacacactatcaagttatgaatgactgattgaat
gattgctggggtcattctttacatttcatttatttttgcctctttctttt
tcaaaacttagaccctggtgagatggtgagcatggaaaaaaggaaattaa
agctaaatggccatggatatataaagttggtacagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_54652051_54652943
seq2: B6Ng01-343P05.g_266_1154

seq1  TGGGATTGCAGGCTTGTACAACCACTATGGAAATCAGTCTGGCGGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGCAGGCTTGTACAACCACTATGGAAATCAGTCTGGCGGTTCCT  50

seq1  CAGAAAACTGGATATAGTACTACCGGAGGATTCAGGTGTACTTTTAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACTGGATATAGTACTACCGGAGGATTCAGGTGTACTTTTAAATC  100

seq1  ATTAGCTGGAGAACTCACCAATTACTATGCACTTTATCCTTAGAACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGGAGAACTCACCAATTACTATGCACTTTATCCTTAGAACTCCT  150

seq1  TTAATTGTGTCCCATAAGTTTGGGTGTGTTGTGCCTTCGTTTTCATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTGTCCCATAAGTTTGGGTGTGTTGTGCCTTCGTTTTCATTGAA  200

seq1  TTCTAGAAAGTCTTTAATATGGGACTTCTAACAAGTGGAACAGGGGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAAAGTCTTTAATATGGGACTTCTAACAAGTGGAACAGGGGCTAT  250

seq1  GTTGGCCTCTGTTCCCCACCATTGGATCTCATTTCCCTTACCTGGACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCCTCTGTTCCCCACCATTGGATCTCATTTCCCTTACCTGGACTGC  300

seq1  CTAACTGGGCTTCAGTTGAAGAGGATATGCCTAGTCTTGCTGGGATGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGGCTTCAGTTGAAGAGGATATGCCTAGTCTTGCTGGGATGAGA  350

seq1  TGTCCAGGGTAGGGTGGTAGCCAAGCAATGGGTTTCCCCTTCTGTGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGGTAGGGTGGTAGCCAAGCAATGGGTTTCCCCTTCTGTGAGGA  400

seq1  AAAAGGGAGGAGGCAATGGGGGAGAGGAATTTGTAAGAGTAGGACTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAGGAGGCAATGGGGGAGAGGAATTTGTAAGAGTAGGACTGTGA  450

seq1  GGAGAGGAGGGAAGAAGTCTGTGATGGGAACATAAAATGAATAAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGGGAAGAAGTCTGTGATGGGAACATAAAATGAATAAAAATAA  500

seq1  TTATTGGAGAAAAGTACGTATCAAAAATTGTTAGATATTGCCTATTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGAGAAAAGTACGTATCAAAAATTGTTAGATATTGCCTATTCCTT  550

seq1  TTTAGTTTTTTCCATGAATATGGAATGTGCTTGATTAGCAGGGGTTAGTC  600
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAG-TTTTTCCATGAATATGGAATGTGCTTGATTAGCAGGGGTTAGTC  599

seq1  ACATGACAAAGAAGACCTACAGATAAGAGTAGATGTGGTGACATATACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAAAGAAGACCTACAGATAAGAGTAGATGTGGTGACATATACCT  649

seq1  GTCATGCCAGCACATGGGAACCAAAGAGAAGGATGTTTTGTTTTATGTCA  700
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCATGCCAGCACATGGGAACCAAAGAGAAAGATGTTTTGTTTTATGTCA  699

seq1  GCATGGTTTAC-CTAATAAGACACACTATCAAGTTATGAATGACTGAATG  749
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  GCATGGTTTACTCTAATAAGACACACTATCAAGTTATGAATGACTGATTG  749

seq1  AGTGATTGCTGGGGTCA-TCTTTACATTTTCATTTATTTTTGCCTCTTTC  798
      | ||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AATGATTGCTGGGGTCATTCTTTACA-TTTCATTTATTTTTGCCTCTTTC  798

seq1  TTTTCAAAAACTTAGAACCTGTGAAGATTGTGAGCATGGAAAAAAAGAAA  848
      ||||  |||||||||| ||||   |||| |||||||||||||||| ||||
seq2  TTTTTCAAAACTTAGACCCTGGTGAGATGGTGAGCATGGAAAAAAGGAAA  848

seq1  TATAGAGGTTAAAAAGGGCATGAATAATATAAAGTTGGTACAGCT  893
      | || || |  ||| || |||| || |||||||||||||||||||
seq2  T-TAAAGCT--AAATGGCCATGGAT-ATATAAAGTTGGTACAGCT  889


| Home | SequenceCutter | Blast | Download |