BAC Information

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BAC

Clone NameB6Ng01-344K06
Chromosome16 (Build37)
Map Location 25,565,485 - 25,662,547
singlet/doubletdoublet
Overlap genenone
Upstream geneLpp, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16, LOC100043057, Il1rap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344K06.bB6Ng01-344K06.g
ACCGA127075GA127076
length1,0231,054
definitionB6Ng01-344K06.b B6Ng01-344K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,565,485 - 25,566,261)(25,661,492 - 25,662,547)
sequence
gaattcatgtagccgaaatcatgttattttcctttgccatctacatatac
aacctaagaatggggtgcaattgagttttagacagagtcaatatttaatc
agtcactgctatctgttgtagtaatttattcatcaaggcaaaccagcatc
ttgaccttaagtagcattcatcatatggtaaaaacagcaaaaacaaaaac
aaaacaactatatagaaaaaaaaacgtgaagcaaaaatccaaacaataaa
ccaaaaaggctgattaagagcacgattttcgatcttggtccgagacccgc
cgaacttaggaaattagtctgaacaggtgagagggtgcgccagagaacct
gacagcttctggaacaggcagaagcacagaggggctgaggcagcaccctg
tgtgggccggggacagccggccaccttccggaccggaggacaggtgcccg
cccggctggggaggcggcctaagccacagcagcagcggtcaccatcttgg
tccgggacctgccgaacttaggaaattagtctgaacgggtgagagggtgc
gccagagaacctgacagcttctggaacaggcggaagcacagaggcgctga
ggcagcaccctttgtgggccggggacagccagccaccgtccggaccggag
gacaggtgcccgtccggctggggaggcggcctaagccacagcagcagcgg
tcgccatcttggtccgagacccgccgaacttaggaaattagtctgaacag
gagagagggtgcgccagagaacctgacagcttctggaacaggcagaagca
cagaggcgctgaggcagcaccctgtgtgggccggggacagccggccacct
tccggaccggaggacaggtgcccgcctggctggggaggcggcctaagcca
cagcagcagcggtcgccatcttggtcccgggactccaaggaacttaggaa
tttagtctgcttaggtgagagtctgtaccacctgggaactgccaaagcac
acagtgtctgagaaaggtcctgt

gaattcttttttggaggaaagtgggcttgtctctttccagtgttctgcta
ctctattattcagctgccaggcttttgagatgaattatcaatagatgtta
gactagtgtgaatgttggggggttgatcactgaaagcaaaacaactcttt
cttgtgttatttttttttctaatggttaatgtactggctagttttgtttc
aacttgacacaagctggagttatcacagagaaaggagcttcagttgggga
aatgcctctacaagatctagctgtaaagcattttctcaattagtgatcaa
ggggggaggtccccttgtgggtggtgccatctctaggctggtagtcttaa
ttctataagagagcaggctgagcaaagccaggggaagcaagccagtaatg
aacatccctccatggcctctgcaccagctcctgcttcctgacctgcttga
gttccagtcctgacttccttggtggtgaacagcaatgtggaagtgtaagc
tgaataaaccctttcctccccaacttgtttcttggtcatgatgtttgtgc
aagaatagaaaccctgactaagacagatagtatgagagatactacttctt
ttccagaagtgtgctgggacctagagtgcaagtgtagataatttttcttt
cagggacaaagtgaattttatgtactaaaggagggaatagatgcatgtaa
tatgataaaccagaaaaataagatctatgactgaagaactgagatgcttt
ggacccatgacagcacccatgacaataaaattccaagaattttattgaag
taaaagcacttgtggcacttgtggggagtctagtgggttctgtggaagga
aagcagaacccatgagagcctctcgtttctctccttctttgacgagcaaa
tagagcagatgttaaaaaaaaaaaaaagaaatcccatgctccctcgtgat
cattcaatattatagctatggaactagtcaaatacaacttcaaagagaga
agaggggaagtggcagagttgtagagaagacagaaggtgtgaggggggag
gggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25565485_25566261
seq2: B6Ng01-344K06.b_46_822

seq1  GAATTCATGTAGCCGAAATCATGTTATTTTCCTTTGCCATCTACATATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGCCGAAATCATGTTATTTTCCTTTGCCATCTACATATAC  50

seq1  AACCTAAGAATGGGGTGCAATTGAGTTTTAGACAGAGTCAATATTTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAGAATGGGGTGCAATTGAGTTTTAGACAGAGTCAATATTTAATC  100

seq1  AGTCACTGCTATCTGTTGTAGTAATTTATTCATCAAGGCAAACCAGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGCTATCTGTTGTAGTAATTTATTCATCAAGGCAAACCAGCATC  150

seq1  TTGACCTTAAGTAGCATTCATCATATGGTAAAAACAGCAAAAACAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTTAAGTAGCATTCATCATATGGTAAAAACAGCAAAAACAAAAAC  200

seq1  AAAACAACTATATAGAAAAAAAAACGTGAAGCAAAAATCCAAACAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACTATATAGAAAAAAAAACGTGAAGCAAAAATCCAAACAATAAA  250

seq1  CCAAAAAGGCTGATTAAGAGCACGATTTTCGATCTTGGTCCGAGACCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGGCTGATTAAGAGCACGATTTTCGATCTTGGTCCGAGACCCGC  300

seq1  CGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCT  350

seq1  GACAGCTTCTGGAACAGGCAGAAGCACAGAGGGGCTGAGGCAGCACCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTTCTGGAACAGGCAGAAGCACAGAGGGGCTGAGGCAGCACCCTG  400

seq1  TGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCCGGGGACAGCCGGCCACCTTCCGGACCGGAGGACAGGTGCCCG  450

seq1  CCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCACCATCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCACCATCTTGG  500

seq1  TCCGGGACCTGCCGAACTTAGGAAATTAGTCTGAACGGGTGAGAGGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGACCTGCCGAACTTAGGAAATTAGTCTGAACGGGTGAGAGGGTGC  550

seq1  GCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCGCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAACCTGACAGCTTCTGGAACAGGCGGAAGCACAGAGGCGCTGA  600

seq1  GGCAGCACCCTTTGTGGGCCGGGGACAGCCAGCCACCGTCCGGACCGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCACCCTTTGTGGGCCGGGGACAGCCAGCCACCGTCCGGACCGGAG  650

seq1  GACAGGTGCCCGTCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTGCCCGTCCGGCTGGGGAGGCGGCCTAAGCCACAGCAGCAGCGG  700

seq1  TCGCCATCTTGGTCCGAGACCCGCCGAACTTAGGAAATTAGTCTGAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATCTTGGTCCGAGACCCGCCGAACTTAGGAAATTAGTCTGAACAG  750

seq1  GAGAGAGGGTGCGCCAGAGAACCTGAC  777
      |||||||||||||||||||||||||||
seq2  GAGAGAGGGTGCGCCAGAGAACCTGAC  777


seq1: chr16_25661492_25662547
seq2: B6Ng01-344K06.g_65_1118 (reverse)

seq1  CCCCCT-CCCCCTCA---CCTCTGTCTTCCTCCTACAACTCCTGCCACTC  46
      |||||| ||||||||   | |||||||||   |||||||| |||||||| 
seq2  CCCCCTCCCCCCTCACACCTTCTGTCTTC--TCTACAACT-CTGCCACTT  47

seq1  CCCTCTCTCCTC-CTTTGAAGTTGTATTTGACTAGTTTCCATAGCTATAA  95
      ||| |||| ||| |||||||||||||||||||||| ||||||||||||||
seq2  CCC-CTCTTCTCTCTTTGAAGTTGTATTTGACTAG-TTCCATAGCTATAA  95

seq1  TTATTGAATGATCACGA-GGAGCATGGGATTTCTTTTTTTTTTTTTTTAA  144
       |||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  -TATTGAATGATCACGAGGGAGCATGGGATTTC-TTTTTTTTTTTTTTAA  143

seq1  CATCTGCTCTATTTTGCTCGTCAAAGAAGGAGAGAAACGAGAGGCTCTCA  194
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTCTA-TTTGCTCGTCAAAGAAGGAGAGAAACGAGAGGCTCTCA  192

seq1  TGGGTTCTGCTTTCCTTCCACAGAACCCACTAGACTCCCCACAAGTGCCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTGCTTTCCTTCCACAGAACCCACTAGACTCCCCACAAGTGCCA  242

seq1  CAAGTGCTTTTACTTCAATAAAATTCTTGGAATTTTATTGTCATGGGTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTTTTACTTCAATAAAATTCTTGGAATTTTATTGTCATGGGTGC  292

seq1  TGTCATGGGTCCAAAGCATCTCAGTTCTTCAGTCATAGATCTTATTTTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGGGTCCAAAGCATCTCAGTTCTTCAGTCATAGATCTTATTTTTC  342

seq1  TGGTTTATCATATTACATGCATCTATTCCCTCCTTTAGTACATAAAATTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTATCATATTACATGCATCTATTCCCTCCTTTAGTACATAAAATTC  392

seq1  ACTTTGTCCCTGAAAGAAAAATTATCTACACTTGCACTCTAGGTCCCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCCCTGAAAGAAAAATTATCTACACTTGCACTCTAGGTCCCAGC  442

seq1  ACACTTCTGGAAAAGAAGTAGTATCTCTCATACTATCTGTCTTAGTCAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTGGAAAAGAAGTAGTATCTCTCATACTATCTGTCTTAGTCAGG  492

seq1  GTTTCTATTCTTGCACAAACATCATGACCAAGAAACAAGTTGGGGAGGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTCTTGCACAAACATCATGACCAAGAAACAAGTTGGGGAGGAA  542

seq1  AGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCACCACCAAGGAAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTATTCAGCTTACACTTCCACATTGCTGTTCACCACCAAGGAAGT  592

seq1  CAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGGTGCAGAGGCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGGTGCAGAGGCCA  642

seq1  TGGAGGGATGTTCATTACTGGCTTGCTTCCCCTGGCTTTGCTCAGCCTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGATGTTCATTACTGGCTTGCTTCCCCTGGCTTTGCTCAGCCTGC  692

seq1  TCTCTTATAGAATTAAGACTACCAGCCTAGAGATGGCACCACCCACAAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTATAGAATTAAGACTACCAGCCTAGAGATGGCACCACCCACAAGG  742

seq1  GGACCTCCCCCCTTGATCACTAATTGAGAAAATGCTTTACAGCTAGATCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCCCCCTTGATCACTAATTGAGAAAATGCTTTACAGCTAGATCT  792

seq1  TGTAGAGGCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGCATTTCCCCAACTGAAGCTCCTTTCTCTGTGATAACTCCAGC  842

seq1  TTGTGTCAAGTTGAAACAAAACTAGCCAGTACATTAACCATTAGAAAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCAAGTTGAAACAAAACTAGCCAGTACATTAACCATTAGAAAAAA  892

seq1  AAATAACACAAGAAAGAGTTGTTTTGCTTTCAGTGATCAACCCCCCAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACACAAGAAAGAGTTGTTTTGCTTTCAGTGATCAACCCCCCAACA  942

seq1  TTCACACTAGTCTAACATCTATTGATAATTCATCTCAAAAGCCTGGCAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTAGTCTAACATCTATTGATAATTCATCTCAAAAGCCTGGCAGC  992

seq1  TGAATAATAGAGTAGCAGAACACTGGAAAGAGACAAGCCCACTTTCCTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATAGAGTAGCAGAACACTGGAAAGAGACAAGCCCACTTTCCTCC  1042

seq1  AAAAAAGAATTC  1056
      ||||||||||||
seq2  AAAAAAGAATTC  1054


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