BAC Information

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BAC

Clone NameB6Ng01-344L04
Chromosome16 (Build37)
Map Location 64,318,359 - 64,319,575
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344L04.bB6Ng01-344L04.g
ACCGA127115GA127116
length1,1741,203
definitionB6Ng01-344L04.b B6Ng01-344L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatattgaatggcagagaagcacctgaaaaaatg
ttcaacatccctaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcataccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatttggagaaagatgaacactcctctattgttggtg
gaattgcaagctgtacaaccactctggaaatcagtctggcagttcctcag
aaaattggacatactactactggaggatcctgcaatacctctcctgggca
tatatccagaagatgtcccaaccggtaagaaggacagatgcttcactatg
ttcatatcagccttatatataattgccagaagctggaaagaacccagatg
cccctcaacagagcaatggatacagaaaatgtggtacatttacacaatgg
agtattactcagctattaaaaagaatgaattaatgaaattcctaggcaaa
tggatgggcctggagggcatcatcctgagtgaggtaacataatcacaaaa
gaactcacacaatatgtactcactgataagtatatattagcccagaagct
tagaatacccaagatataagatacaatttgagaaacacatgaaactcaag
gagaactaagaccaaagtttagacactttgccccttcttacaattaggaa
taaaatacccatggaaggagttacagagacacagtttggagctgagatga
aaggatggaccttgtagagactgccatacctgggaatccatcccataatc
agtctccaaatggtgacatcattgcatacactagcaagattttgcttaaa
tgacccagatatagctgcctcttgtgagaatatgccagggcctagcaaac
acagaaatggatgctcacagtcagctattggatggatcatagggccccca
ttggaggagctagagaaagtacccaaggagctggggggatctgcaccgta
taggtggaacaacatatgaactaaccagtagctccaggagcttgtgtctc
tagctgcatatgtatcagaagatgcctagtcagcatcagtggaaggagag
gcccatgtgtgcaactttatattccctcagtacaggacaaacacaggcaa
gattgggaagtgggggtgggtttg

gaattccttgactgagttgttatcagggatcaactaatgtcctattaacc
tataatttttgttgacaaataccaatgggataatttcttatgagctaaat
aaaattagctaatgtcaaaacaataaaacattttttgtggcatttaattc
attaaatctagaggtttaaacctagagaactggatagtaatgaaatctca
gggtagtgagcattctcagcagttaaaaattgaaacatagtcctggccat
tgaagtgggcattgcggtgttagtggcttctctaagccccacaggaagag
caaacagagccaacagatggcctccctctttgcaagattgatcttgcctc
tctggcaccagggtttgagttcagttttgccagaatggtcagcatgtatc
gcgttaattgttggcagggaccacccaatgatgttaaagcccagctcaca
gtgggcttctgattaaggaaagcaagcaacttccagctctagactgactg
ccttcaacaaagccatgagataggacacctttcatataacatgcatagta
ggtgagaaagaagtgttatttttggctctgtgcctggaactgtgaagcct
gtgctgagtaacttctaagcagacacttttccattaaatagataaaatat
aagcaggaagcacacagccaatggtgtggtcccgtccacaaagcctggtc
agttattaagaaggagaaggaatgtgcattacaggtcagcaatgagacat
catctatttctcagtgggaacacttgagacaagatgctggcagatggcat
cctgtaggagagcattaggtgcttttcatgactggagattaacagattgt
taaggatattaaagtctctggcattttataggagaatttgtggaaaaaac
taagatgataggatggggaccacatctccataacagcaccactgatgttt
cagagatcatctctcctgtagcagctcctaacggaaatattatcaaataa
ttatcaaaagaatgtgtttccaggtggtgcagaagacaactgacagagaa
catggtgctttgttaacataaatagcagcactgcatagcatacaacagct
cccgttagtaaccaggagtaaatattctttaactcacaaatacataagtg
aatggactttatttaaggcacctattaaagagatatccaaaactcttaaa
cct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64318359_64319575
seq2: B6Ng01-344L04.g_67_1269 (reverse)

seq1  AGGTTTAAGA-TTTTG--AATCTCTTTAATAAGGTGGCCCTAAATAAATA  47
      |||||||||| |||||   ||||||||||| |||| ||| ||||||||  
seq2  AGGTTTAAGAGTTTTGGATATCTCTTTAAT-AGGT-GCCTTAAATAAAGT  48

seq1  CTCATTCCAAACTTATGTATTTGTGAGTTAAAG-ATATTTAACTCTGTGT  96
      | |||||   ||||||||||||||||||||||| |||||| ||||   ||
seq2  C-CATTC---ACTTATGTATTTGTGAGTTAAAGAATATTT-ACTCCTGGT  93

seq1  TACTTACGGGAGCTGTTGGTATGCTATGCAGTTGCTGCTATTTATGTTTA  146
      |||| |||||||||||| ||||||||||||| |||||||||||||| |||
seq2  TACTAACGGGAGCTGTT-GTATGCTATGCAG-TGCTGCTATTTATG-TTA  140

seq1  ACAAAGGCACCATGTTCCTTCTGTTCAGTTTGTC-TCTGCACACCTTGGA  195
      ||||| |||||||||||  |||| |||| ||||| |||||||  | ||||
seq2  ACAAA-GCACCATGTTC--TCTG-TCAG-TTGTCTTCTGCACCACCTGGA  185

seq1  AACACATTCTTTTGATAATTATTTTGATAATTATTTTCCGTTAGGAGCTG  245
      ||||||||||||||||||||| |||||||||   ||||||||||||||||
seq2  AACACATTCTTTTGATAATTA-TTTGATAAT--ATTTCCGTTAGGAGCTG  232

seq1  CTACAGGAGAGATGATCTCTGAAACATCAGTGGTGCTGTTTATGGAGATG  295
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTACAGGAGAGATGATCTCTGAAACATCAGTGGTGCTG-TTATGGAGATG  281

seq1  TGGTCCCCATCCTATCATCTTAGTTTTTTCCACAAATTCTCCTATAAAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCATCCTATCATCTTAGTTTTTTCCACAAATTCTCCTATAAAAT  331

seq1  GCCAGAGACTTTAATATCCTTAACAATCTGTTAATCTCCAGTCATGAAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGACTTTAATATCCTTAACAATCTGTTAATCTCCAGTCATGAAAA  381

seq1  GCACCTAATGCTCTCCTACAGGATGCCATCTGCCAGCATCTTGTCTCAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAATGCTCTCCTACAGGATGCCATCTGCCAGCATCTTGTCTCAAG  431

seq1  TGTTCCCACTGAGAAATAGATGATGTCTCATTGCTGACCTGTAATGCACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCACTGAGAAATAGATGATGTCTCATTGCTGACCTGTAATGCACA  481

seq1  TTCCTTCTCCTTCTTAATAACTGACCAGGCTTTGTGGACGGGACCACACC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCCTTCTTAATAACTGACCAGGCTTTGTGGACGGGACCACACC  531

seq1  ATTGGCTGTGTGCTTCCTGCTTATATTTTATCTATTTAATGGAAAAGTGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTGTGTGCTTCCTGCTTATATTTTATCTATTTAATGGAAAAGTGT  581

seq1  CTGCTTAGAAGTTACTCAGCACAGGCTTCACAGTTCCAGGCACAGAGCCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAGAAGTTACTCAGCACAGGCTTCACAGTTCCAGGCACAGAGCCA  631

seq1  AAAATAACACTTCTTTCTCACCTACTATGCATGTTATATGAAAGGTGTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACACTTCTTTCTCACCTACTATGCATGTTATATGAAAGGTGTCC  681

seq1  TATCTCATGGCTTTGTTGAAGGCAGTCAGTCTAGAGCTGGAAGTTGCTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATGGCTTTGTTGAAGGCAGTCAGTCTAGAGCTGGAAGTTGCTTG  731

seq1  CTTTCCTTAATCAGAAGCCCACTGTGAGCTGGGCTTTAACATCATTGGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTAATCAGAAGCCCACTGTGAGCTGGGCTTTAACATCATTGGGT  781

seq1  GGTCCCTGCCAACAATTAACGCGATACATGCTGACCATTCTGGCAAAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTGCCAACAATTAACGCGATACATGCTGACCATTCTGGCAAAACT  831

seq1  GAACTCAAACCCTGGTGCCAGAGAGGCAAGATCAATCTTGCAAAGAGGGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAACCCTGGTGCCAGAGAGGCAAGATCAATCTTGCAAAGAGGGA  881

seq1  GGCCATCTGTTGGCTCTGTTTGCTCTTCCTGTGGGGCTTAGAGAAGCCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTGTTGGCTCTGTTTGCTCTTCCTGTGGGGCTTAGAGAAGCCAC  931

seq1  TAACACCGCAATGCCCACTTCAATGGCCAGGACTATGTTTCAATTTTTAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCGCAATGCCCACTTCAATGGCCAGGACTATGTTTCAATTTTTAA  981

seq1  CTGCTGAGAATGCTCACTACCCTGAGATTTCATTACTATCCAGTTCTCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGAATGCTCACTACCCTGAGATTTCATTACTATCCAGTTCTCTA  1031

seq1  GGTTTAAACCTCTAGATTTAATGAATTAAATGCCACAAAAAATGTTTTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAACCTCTAGATTTAATGAATTAAATGCCACAAAAAATGTTTTAT  1081

seq1  TGTTTTGACATTAGCTAATTTTATTTAGCTCATAAGAAATTATCCCATTG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGACATTAGCTAATTTTATTTAGCTCATAAGAAATTATCCCATTG  1131

seq1  GTATTTGTCAACAAAAATTATAGGTTAATAGGACATTAGTTGATCCCTGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTCAACAAAAATTATAGGTTAATAGGACATTAGTTGATCCCTGA  1181

seq1  TAACAACTCAGTCAAGGAATTC  1217
      ||||||||||||||||||||||
seq2  TAACAACTCAGTCAAGGAATTC  1203


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