BAC Information

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BAC

Clone NameB6Ng01-344N24
Chromosome16 (Build37)
Map Location 24,517,829 - 24,647,660
singlet/doubletdoublet
Overlap geneLpp, A730098P11Rik
Upstream geneMasp1, LOC100043018, Rtp4, EG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik
Downstream gene5430420C16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344N24.bB6Ng01-344N24.g
ACCGA127247GA127248
length1,149240
definitionB6Ng01-344N24.b B6Ng01-344N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,646,505 - 24,647,660)(24,517,829 - 24,518,068)
sequence
gaattctatgtctacactcctttgcaaagtgaaaataacagcacatgcct
tagctactgccttggattttaccaacgaaagtacataaattttaaactgt
ctttaaacatcgatgtcctctataaatatacattattttttactatgagg
tgatttttaatgtaacctaatgatcagaccattcttcacaaatatttaga
aaatcaagcataaaaatgtaattaagtaaataagcacaatatatagctcg
tagtatactgtgcttctaaggactcaagggcaaaggcaaagggacagaaa
agaaaaacatatgactagagatggcagaggaagtcctcaccactggtata
cttggttccccttaaaatgtccaccagtgaattcttctaaaacaattaaa
ctctgtttttaccagggctctgctatgtattacttgctaacctgtttcct
taaggacaatctgttcttaaacaattttcaagacacaacagggaaatcta
acatactcatagaagagttcacttccaccctcaaaatcaaatacatcagc
caagtcaaaacaacaaccacaatctggtgatcaaacaaacagtcgcaacc
caatttcttttgcttaactggctctttctccccatgttgttctctaaacc
acactccaacatctgaacatggtcaagccctgctctaaaaaccacactcc
agcatgataaacatggtcaactcctgaaccagtagaaaagcttttaaaag
tccaaaatctattggattttattcatcgaagaatcaagatttgtcatgtc
caattaagacttcaatatttaagttctctggaaaaagcaagttttgtctt
tagggagtcagccactgcttgcatttcatttacttcaccttttctccctc
agagggaggtcctgtgatggaagacaatacaaacagcacaaatccaatga
cgtattctgggctgaagctcaagcaacttgctaatttagtggactgtctg
agcagcccaaagaacataatttagctgagtgaaggatcctttcgtccctc
ttttcactcattttggacagttgcttcgagtctatccattcttacacact
gatttaatggcaccggtaatctcacagtagctgcagtcctgcgagtctc

acactgagttacatagtgcttaatgtgtctgaatgagaaagacactctga
gggcgtgagaaggaggagaaggccgcaaaggtcatggggagggtgtggtc
ccagctggagaggaagctagagcaggaacaggggaagcaaggaggctctg
catcccgaccagacctgctgctctctcacccctctgcccagtggcacaca
cgttcgtgtgagtgtgtgtgtatgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_24646505_24647660
seq2: B6Ng01-344N24.b_50_1198 (reverse)

seq1  GAGACTCGAAGGACTGCAGCTACTGTTGGAAGAATACACGGGTGCAATAA  50
      |||||||| |||||||||||||||||    ||| |  || ||||| || |
seq2  GAGACTCGCAGGACTGCAGCTACTGT---GAGATT--ACCGGTGCCATTA  45

seq1  ATCCAGTGTGGTAAGGAATGATAGACCTTCCGAGGCCACTGGCCAAATGA  100
      |  |||||| ||||| |  |||||||    ||| || |||| |||||   
seq2  AATCAGTGT-GTAAGAATGGATAGAC---TCGAAGCAACTGTCCAAAATG  91

seq1  AGTGAAAGGAGGGAAGGAAGGAATCCTTCACTCAGCTAAATTATG-TCTT  149
      ||||||| |||||| | |||| ||||||||||||||||||||||| ||||
seq2  AGTGAAAAGAGGGACGAAAGG-ATCCTTCACTCAGCTAAATTATGTTCTT  140

seq1  TGGGCTGCTCAGACAAGTCCACTAAATTAGCAAGGTGCTTGAGCTTCAGC  199
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TGGGCTGCTCAGAC-AGTCCACTAAATTAGCAAGTTGCTTGAGCTTCAGC  189

seq1  CCAGAATACGTCATTGGA-TTGTGCTGTTTGTATTGTCTTCCATCACAGG  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAGAATACGTCATTGGATTTGTGCTGTTTGTATTGTCTTCCATCACAGG  239

seq1  ACCT-CCTCTGAGGGAG-AAAGGTGAAGTAAATGAAATGCAAGCAGTGGC  296
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACCTCCCTCTGAGGGAGAAAAGGTGAAGTAAATGAAATGCAAGCAGTGGC  289

seq1  TGACTCCCTAAAGACAAAACTTGCTTTTTCCAGAGAACTTAAATATTGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCCTAAAGACAAAACTTGCTTTTTCCAGAGAACTTAAATATTGAA  339

seq1  GTCTTAATTGGACATGACAAATCTTGATTCTTCGATGAATAAAATCCAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAATTGGACATGACAAATCTTGATTCTTCGATGAATAAAATCCAAT  389

seq1  AGATTTTGGACTTTTAAAAGCTTTTCTACTGGTTCAGGAGTTGACCATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGGACTTTTAAAAGCTTTTCTACTGGTTCAGGAGTTGACCATGT  439

seq1  TTATCATGCTGGAGTGTGGTTTTTAGAGCAGGGCTTGACCATGTTCAGAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGCTGGAGTGTGGTTTTTAGAGCAGGGCTTGACCATGTTCAGAT  489

seq1  GTTGGAGTGTGGTTTAGAGAACAACATGGGGAGAAAGAGCCAGTTAAGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGTGTGGTTTAGAGAACAACATGGGGAGAAAGAGCCAGTTAAGCA  539

seq1  AAAGAAATTGGGTTGCGACTGTTTGTTTGATCACCAGATTGTGGTTGTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTGGGTTGCGACTGTTTGTTTGATCACCAGATTGTGGTTGTTG  589

seq1  TTTTGACTTGGCTGATGTATTTGATTTTGAGGGTGGAAGTGAACTCTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTTGGCTGATGTATTTGATTTTGAGGGTGGAAGTGAACTCTTCT  639

seq1  ATGAGTATGTTAGATTTCCCTGTTGTGTCTTGAAAATTGTTTAAGAACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATGTTAGATTTCCCTGTTGTGTCTTGAAAATTGTTTAAGAACAG  689

seq1  ATTGTCCTTAAGGAAACAGGTTAGCAAGTAATACATAGCAGAGCCCTGGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCTTAAGGAAACAGGTTAGCAAGTAATACATAGCAGAGCCCTGGT  739

seq1  AAAAACAGAGTTTAATTGTTTTAGAAGAATTCACTGGTGGACATTTTAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGAGTTTAATTGTTTTAGAAGAATTCACTGGTGGACATTTTAAG  789

seq1  GGGAACCAAGTATACCAGTGGTGAGGACTTCCTCTGCCATCTCTAGTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCAAGTATACCAGTGGTGAGGACTTCCTCTGCCATCTCTAGTCAT  839

seq1  ATGTTTTTCTTTTCTGTCCCTTTGCCTTTGCCCTTGAGTCCTTAGAAGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTCTTTTCTGTCCCTTTGCCTTTGCCCTTGAGTCCTTAGAAGCA  889

seq1  CAGTATACTACGAGCTATATATTGTGCTTATTTACTTAATTACATTTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACTACGAGCTATATATTGTGCTTATTTACTTAATTACATTTTTA  939

seq1  TGCTTGATTTTCTAAATATTTGTGAAGAATGGTCTGATCATTAGGTTACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGATTTTCTAAATATTTGTGAAGAATGGTCTGATCATTAGGTTACA  989

seq1  TTAAAAATCACCTCATAGTAAAAAATAATGTATATTTATAGAGGACATCG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCACCTCATAGTAAAAAATAATGTATATTTATAGAGGACATCG  1039

seq1  ATGTTTAAAGACAGTTTAAAATTTATGTACTTTCGTTGGTAAAATCCAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAAGACAGTTTAAAATTTATGTACTTTCGTTGGTAAAATCCAAG  1089

seq1  GCAGTAGCTAAGGCATGTGCTGTTATTTTCACTTTGCAAAGGAGTGTAGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGCTAAGGCATGTGCTGTTATTTTCACTTTGCAAAGGAGTGTAGA  1139

seq1  CATAGAATTC  1156
      ||||||||||
seq2  CATAGAATTC  1149


seq1: chr16_24517829_24518068
seq2: B6Ng01-344N24.g_75_314

seq1  ACACTGAGTTACATAGTGCTTAATGTGTCTGAATGAGAAAGACACTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTTACATAGTGCTTAATGTGTCTGAATGAGAAAGACACTCTGA  50

seq1  GGGCGTGAGAAGGAGGAGAAGGCCGCAAAGGTCATGGGGAGGGTGTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGAGAAGGAGGAGAAGGCCGCAAAGGTCATGGGGAGGGTGTGGTC  100

seq1  CCAGCTGGAGAGGAAGCTAGAGCAGGAACAGGGGAAGCAAGGAGGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGAGAGGAAGCTAGAGCAGGAACAGGGGAAGCAAGGAGGCTCTG  150

seq1  CATCCCGACCAGACCTGCTGCTCTCTCACCCCTCTGCCCAGTGGCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCGACCAGACCTGCTGCTCTCTCACCCCTCTGCCCAGTGGCACACA  200

seq1  CGTTCGTGTGAGTGTGTGTGTATGTGTGTGTGTGTGTGTG  240
      ||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCGTGTGAGTGTGTGTGTATGTGTGTGTGTGTGTGTG  240


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