BAC Information

Click to search

BAC

Clone NameB6Ng01-345E09
Chromosome16 (Build37)
Map Location 50,837,681 - 51,026,857
singlet/doubletdoublet
Overlap geneEG639820
Upstream geneCd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik
Downstream geneLOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345E09.bB6Ng01-345E09.g
ACCGA127523GA127524
length1,0801,142
definitionB6Ng01-345E09.b B6Ng01-345E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,837,681 - 50,838,737)(51,025,700 - 51,026,857)
sequence
gaattcaggaaggtggatgcctagggggttggagatggatgtgtgtggga
tgtttgcgaatgaatcaccgggcaggattggaggtgttcttcagatcaga
aatgggaaactggtaggttgattggaaaggcagacttgagctttcaatgg
agagaaacagatctttcgggacccaggcctgggttccacggaggctgaga
agttcccagaacaaaatcatcatcctagcggggatacagagagtagatga
ccaaagtccagacttaaactgaagtcacttggcataatgattagagaagt
cattgaaatcagccacactccaaggcccagaaagcaatgagcaacacact
ttagtagtccctgggagttcacaggagaagcagtgagagcaaagagggca
gggaggtgtaggagttggttttgaaagaaaacgtaacaacacaggcaatc
ctctgttcgttaactttgcctgtagggctctgagactgaaggtctgatga
gaaaattgagtggaagaaagaagcagagaagtcatcgctccttcccacag
tgcctcaagattacttgacaactggacttagttcccttagggaagggagt
tcatgtttggcaaagagtctccaagagcacatttagtttccactccagga
cgccatacaaacctgtatcctctgtacatctttacttcccagaatcaccc
catcctgaatataaataaatatacagttattttatctttgaaactataaa
ataattacattatttcccccactttcccctcatctccaaatcctcctctg
tacccgcccccttctccccttctttcttttaaattcacaggcgcttttaa
catggctgttacacacacacacacacacacactcatacacacacacacac
acacacacacacacacacacacacgaaagtcattgtatatttccttaatt
atataagtacagtctgcgcagttcttcctaataattgtcttttttgaatt
tcaggacagagtatatttggttatttgggtaatgcaatttggcgttgcct
cttcccagggccggggggttaagaaaaagg
gaattccagaggatatctggcatcctgctttatcattccacatcctgcta
cctttgagacaaggtctttcactgaccctgaagcttgattggtagccaac
aagcctcagtgacacttcggtctcaacatttcatagagatggagttacag
gtacatgtactgttttatacctgactctgcattgctggcaagatccaaac
tcaggtcttcataaaggtacaattgatgttacttactctgccatgtctcc
agctacagagaaagcgtttgcttttttttccccttaattttgcttttatt
ttgtttcattttttcaaagaaacaagttcccatgctccggtattttacac
ataattgataggcatactgtcagacactcatgctgtctctaggaaacaaa
aaacaatttatacaaattttctattaacttcccaaaagttataaaataat
ctgcattttaaagtgctctagcaaatgactaccttgtagcctacatatgc
ataaggtagaatcagaaatatttaaatacatgtttaatatgcatattagt
acaggaataaatgcaaaatggaacagaagagctcataaacgtatactata
gccccagagaatatttgaaaactgtgattcactctgcattaaatactctt
tgctggaagcatgttaaattaaatgcttgtactgatctcagtttgataat
caggaaactgaggcacaaagagataaggaactcactaagggccacactgg
gagcagcagtgtgagttggggagcagacagagaaactcaactcccttaac
catttgacttctcctgagcaaagagcacagagaattctgccttaggcact
ccatgcatagtttgtgggctgggtgacaaagtatgactgaaataagccaa
gggaattaggaaagagcaataagcaagggtcagcatgtaacaaaatgggg
gtgacaggattatgaaactaatgatttcagttcataagtgatagcagtcc
atatggtaggaataagatgctgatctatgacttgtataagaataatgata
tacagacgagccaacaggagcatctctttgaaatatgggggttttctcgc
taatccatacaagactccatctggctggaagtgtccaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50837681_50838737
seq2: B6Ng01-345E09.b_48_1123

seq1  GAATTCAGGAAGGTGGATGCCTAGGGGGTTGGAGATGGATGTGTGTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAGGTGGATGCCTAGGGGGTTGGAGATGGATGTGTGTGGGA  50

seq1  TGTTTGCGAATGAATCACCGGGCAGGATTGGAGGTGTTCTTCAGATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCGAATGAATCACCGGGCAGGATTGGAGGTGTTCTTCAGATCAGA  100

seq1  AATGGGAAACTGGTAGGTTGATTGGAAAGGCAGACTTGAGCTTTCAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAACTGGTAGGTTGATTGGAAAGGCAGACTTGAGCTTTCAATGG  150

seq1  AGAGAAACAGATCTTTCGGGACCCAGGCCTGGGTTCCACGGAGGCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAGATCTTTCGGGACCCAGGCCTGGGTTCCACGGAGGCTGAGA  200

seq1  AGTTCCCAGAACAAAATCATCATCCTAGCGGGGATACAGAGAGTAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGAACAAAATCATCATCCTAGCGGGGATACAGAGAGTAGATGA  250

seq1  CCAAAGTCCAGACTTAAACTGAAGTCACTTGGCATAATGATTAGAGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCCAGACTTAAACTGAAGTCACTTGGCATAATGATTAGAGAAGT  300

seq1  CATTGAAATCAGCCACACTCCAAGGCCCAGAAAGCAATGAGCAACACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAATCAGCCACACTCCAAGGCCCAGAAAGCAATGAGCAACACACT  350

seq1  TTAGTAGTCCCTGGGAGTTCACAGGAGAAGCAGTGAGAGCAAAGAGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTCCCTGGGAGTTCACAGGAGAAGCAGTGAGAGCAAAGAGGGCA  400

seq1  GGGAGGTGTAGGAGTTGGTTTTGAAAGAAAACGTAACAACACAGGCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGTAGGAGTTGGTTTTGAAAGAAAACGTAACAACACAGGCAATC  450

seq1  CTCTGTTCGTTAACTTTGCCTGTAGGGCTCTGAGACTGAAGGTCTGATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCGTTAACTTTGCCTGTAGGGCTCTGAGACTGAAGGTCTGATGA  500

seq1  GAAAATTGAGTGGAAGAAAGAAGCAGAGAAGTCATCGCTCCTTCCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGAGTGGAAGAAAGAAGCAGAGAAGTCATCGCTCCTTCCCACAG  550

seq1  TGCCTCAAGATTACTTGACAACTGGACTTAGTTCCCTTAGGGAAGGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAGATTACTTGACAACTGGACTTAGTTCCCTTAGGGAAGGGAGT  600

seq1  TCATGTTTGGCAAAGAGTCTCCAAGAGCACATTTAGTTTCCACTCCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTGGCAAAGAGTCTCCAAGAGCACATTTAGTTTCCACTCCAGGA  650

seq1  CGCCATACAAACCTGTATCCTCTGTACATCTTTACTTCCCAGAATCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCATACAAACCTGTATCCTCTGTACATCTTTACTTCCCAGAATCACCC  700

seq1  CATCCTGAATATAAATAAATATACAGTTATTTTATCTTTGAAACTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAATATAAATAAATATACAGTTATTTTATCTTTGAAACTATAAA  750

seq1  ATAATTACATTATTTCCCCCACTTTCCCCTCATCTCCAAATCCTCCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACATTATTTCCCCCACTTTCCCCTCATCTCCAAATCCTCCTCTG  800

seq1  TACCCGCCCCCTTCTCCCCTTCTTTCTTTTAAATTCACAGGCGCTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGCCCCCTTCTCCCCTTCTTTCTTTTAAATTCACAGGCGCTTTTAA  850

seq1  CATGGCTGTTACACACACACACACACACACACACATACACACACACACAC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATGGCTGTTACACACACACACACACACACACTCATACACACACACACAC  900

seq1  ACACACACACACACACACACACACG-AAGTCATTGTATATT--CCTAAAT  947
      ||||||||||||||||||||||||| |||||||||||||||  | ||| |
seq2  ACACACACACACACACACACACACGAAAGTCATTGTATATTTCCTTAATT  950

seq1  ATATAAGTACAGTCTGCGCAGTCTCT-----ATAA-TGTCTTTTT--GAT  989
      |||||||||||||||||||||| |||     |||| |||||||||   ||
seq2  ATATAAGTACAGTCTGCGCAGT-TCTTCCTAATAATTGTCTTTTTTGAAT  999

seq1  TTCAGGGCAGAG--TATTTGGT--ATTGGGT-AGGCAA-TTGGCGT--GC  1031
      |||||| |||||  ||||||||   |||||| | |||| |||||||   |
seq2  TTCAGGACAGAGTATATTTGGTTATTTGGGTAATGCAATTTGGCGTTGCC  1049

seq1  TCTTCCCAGGGGCCGGGGG-TAAGAAA  1057
      ||||||||||| | ||||| |||||||
seq2  TCTTCCCAGGGCCGGGGGGTTAAGAAA  1076

seq1: chr16_51025700_51026857
seq2: B6Ng01-345E09.g_67_1208 (reverse)

seq1  AATTTTGG-CAC-TCCAGCCAAAATTGAGTCTTGTAAATGATTAGCGAGA  48
      |||||||| ||| ||||||| | || ||||||||| |  |||||||||| 
seq2  AATTTTGGACACTTCCAGCC-AGATGGAGTCTTGT-ATGGATTAGCGAG-  47

seq1  AAAACACCCATATTTCAAAAGAGATGCTCCTGGTTTGGGCTCTGTCTGTT  98
      ||||| |||||||||| |||||||||||||||   | ||||| |||||  
seq2  AAAACCCCCATATTTC-AAAGAGATGCTCCTG---TTGGCTC-GTCTG--  90

seq1  ATTTATCCATTA-TCTTATACAAGGTTCATAGGAATCCAGCATCTTATTC  147
       | ||| ||||| |||||||||||  ||||||  || |||||||||||||
seq2  -TATAT-CATTATTCTTATACAAG--TCATAG--AT-CAGCATCTTATTC  133

seq1  CTACCAATAATGGACTGCTATCAACTTATGAACTGAAATCATTAGTTTCA  197
      ||||||   ||||||||||||| |||||||||||||||||||||||||||
seq2  CTACCA--TATGGACTGCTATC-ACTTATGAACTGAAATCATTAGTTTCA  180

seq1  TAAATCCTGTCA-CCCCATTTTGTTACATGCTGACCCTTGCTTATTGCTC  246
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  T-AATCCTGTCACCCCCATTTTGTTACATGCTGACCCTTGCTTATTGCTC  229

seq1  TTTCCTAATT-CCTTGGCTTATTTCAGTCATACTTTGTCACCCAGCCCAC  295
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAATTCCCTTGGCTTATTTCAGTCATACTTTGTCACCCAGCCCAC  279

seq1  AAACTATGCATGGAGTGCCTAAGGCAGAATTCTCTGTGCTCTTTGCTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATGCATGGAGTGCCTAAGGCAGAATTCTCTGTGCTCTTTGCTCAG  329

seq1  GAGAAGTCAAATGGTTAAGGGAGTTGAGTTTCTCTGTCTGCTCCCCAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCAAATGGTTAAGGGAGTTGAGTTTCTCTGTCTGCTCCCCAACT  379

seq1  CACACTGCTGCTCCCAGTGTGGCCCTTAGTGAGTTCCTTATCTCTTTGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCTGCTCCCAGTGTGGCCCTTAGTGAGTTCCTTATCTCTTTGTG  429

seq1  CCTCAGTTTCCTGATTATCAAACTGAGATCAGTACAAGCATTTAATTTAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTTCCTGATTATCAAACTGAGATCAGTACAAGCATTTAATTTAA  479

seq1  CATGCTTCCAGCAAAGAGTATTTAATGCAGAGTGAATCACAGTTTTCAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCCAGCAAAGAGTATTTAATGCAGAGTGAATCACAGTTTTCAAA  529

seq1  TATTCTCTGGGGCTATAGTATACGTTTATGAGCTCTTCTGTTCCATTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTGGGGCTATAGTATACGTTTATGAGCTCTTCTGTTCCATTTTG  579

seq1  CATTTATTCCTGTACTAATATGCATATTAAACATGTATTTAAATATTTCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTCCTGTACTAATATGCATATTAAACATGTATTTAAATATTTCT  629

seq1  GATTCTACCTTATGCATATGTAGGCTACAAGGTAGTCATTTGCTAGAGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTACCTTATGCATATGTAGGCTACAAGGTAGTCATTTGCTAGAGCA  679

seq1  CTTTAAAATGCAGATTATTTTATAACTTTTGGGAAGTTAATAGAAAATTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATGCAGATTATTTTATAACTTTTGGGAAGTTAATAGAAAATTT  729

seq1  GTATAAATTGTTTTTTGTTTCCTAGAGACAGCATGAGTGTCTGACAGTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATTGTTTTTTGTTTCCTAGAGACAGCATGAGTGTCTGACAGTAT  779

seq1  GCCTATCAATTATGTGTAAAATACCGGAGCATGGGAACTTGTTTCTTTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCAATTATGTGTAAAATACCGGAGCATGGGAACTTGTTTCTTTGA  829

seq1  AAAAATGAAACAAAATAAAAGCAAAATTAAGGGGAAAAAAAAGCAAACGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAACAAAATAAAAGCAAAATTAAGGGGAAAAAAAAGCAAACGC  879

seq1  TTTCTCTGTAGCTGGAGACATGGCAGAGTAAGTAACATCAATTGTACCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTAGCTGGAGACATGGCAGAGTAAGTAACATCAATTGTACCTT  929

seq1  TATGAAGACCTGAGTTTGGATCTTGCCAGCAATGCAGAGTCAGGTATAAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGACCTGAGTTTGGATCTTGCCAGCAATGCAGAGTCAGGTATAAA  979

seq1  ACAGTACATGTACCTGTAACTCCATCTCTATGAAATGTTGAGACCGAAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACATGTACCTGTAACTCCATCTCTATGAAATGTTGAGACCGAAGT  1029

seq1  GTCACTGAGGCTTGTTGGCTACCAATCAAGCTTCAGGGTCAGTGAAAGAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAGGCTTGTTGGCTACCAATCAAGCTTCAGGGTCAGTGAAAGAC  1079

seq1  CTTGTCTCAAAGGTAGCAGGATGTGGAATGATAAAGCAGGATGCCAGATA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCAAAGGTAGCAGGATGTGGAATGATAAAGCAGGATGCCAGATA  1129

seq1  TCCTCTGGAATTC  1158
      |||||||||||||
seq2  TCCTCTGGAATTC  1142