BAC Information

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BAC

Clone NameB6Ng01-345L02
Chromosome16 (Build37)
Map Location 42,147,083 - 42,288,131
singlet/doubletdoublet
Overlap geneGap43
Upstream geneEG667450, Lsamp
Downstream geneBC002163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345L02.bB6Ng01-345L02.g
ACCGA127808GA127809
length1,1251,097
definitionB6Ng01-345L02.b B6Ng01-345L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,147,083 - 42,148,204)(42,287,038 - 42,288,131)
sequence
gaattccatcgttaggttcaggaagcaggtcttcacaacctgcatagcta
gagtcttggagatgcggctttaccatggcccagtttgcacaggcctaaaa
attaagtaaaagaagaaagagagggaggaagctggcaagaaaagaaagac
aggagtgagagaataaaggagaaggaaagaaataaaaggaacaatatgcc
tgtggaagtaggttgcccattcttcacattcaaagtcaatgagttttaag
ggagaggggaggaaaggccatcgtaaggcagctggcgttcctccgcccac
cagtgtcaggaggggtgtctatagccagaggctctgacagaagcactgtg
tgggcagcggggtgctctgctgaccaagctgggccaaagcagatacagca
gctggtgagctgctgccagccagaggcagcagcaggtagagacacagagc
cagcgtccctgagttcgtgattattcatccttaatggctagtcagcacat
ttccagccctgtccaccacagtgacatgctgacttttgcagtgtcaattt
gccatcctttatcctcagcaacatatatatgtatccttctccactctcta
ttcacctctccagaggggtcaaaataagtggatgagagtgcaagaataca
ttgtgtttatgatacattcttcctaagccactggaagcatgctctctttc
catttgttctcattttcctcacctcctagtactctgccaaagactccttt
agtgtatatatttgaataataccttttacagatttttcttcatgcccgaa
ctaaatggaacatttcacatttttctagatgcgtgaatcctggagcacaa
tacgcatgggacagaattcggctccttagtcagttcagacagagcagtgt
tcatgccacaaatgaagatgtgaatttgttttgatgcaacaagaaagttt
cagagtctacagataggttgtagccatctcagtgttcctatgcagataac
tagagatttacccactagatgatgggtggtgccttaatctcagtgcttcc
tacgggaggaaaatcaaggccaattatttgaggtgatactaattcctacc
aagtgatgctaatggtgaagtactt

gaattctctgcttctgtccctcaccacctctactgctcatggattttcct
caaagacgaccctaaaacatctgctgctatagtgttagcaatgtcaccta
agcattctgcctgttgatttggttaaatttcatttgtctgttttaattta
aaaaaaaaatatgctcacatatatgaggtgtgttagggatggtgtggttg
ccatgtgggtgtagaggacaagggaccgatgggaccactggacagagcca
gttctctcatccctccatgtggatactggagatcaaattcaggacatcag
acttggcatcaggcgactttacacactgagccaccttgccagggctacac
tgtattgctatagtctcattacatctttcaaactaagattatcaatacgg
atcaggggaacagggaggtttacatttgttttgcaattctctgctgaaag
agaaaaatattaacttattatctttgtacttctctcctctttcacctttc
cttcctctcctccctttataatttcatatttacttccttctagaatattt
agaatagcttctagtgtaataggagtccatgccacaaagagtcaaaagat
gtgctcctttgatagacagacaatctgatttgttaaggaaagcatgataa
aatccagagagtggcatttaaaataatcccaataataatctcaactgaat
catgcaaataagtatggaatactttaaaacaaaaacaaacaaacaaacaa
acaaacactgcttccgtgactcagatgcaattttaacctattatatttaa
aaaaccctttgtatcatgtatatatagatagctgtaagagcagatgaaca
ttaatagttttctaaaataattatgtttttcaaaactgaaaaatccagtg
tgtgtatacagatttagagaaattattttatgttagaagatagacccctt
ccaactctgtagcttttcgaaaagacaaaccagttttcttctgtgtagag
tgtagtatgattgccttgcaaggatgcctccgaaaagttagattttgaaa
tgtgcttccacactctccagattttatacacactcataaaacctgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_42147083_42148204
seq2: B6Ng01-345L02.b_46_1170

seq1  GAATTCCATCGTTAGGTTCAGGAAGCAGGTCTTCACAACCTGCATAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCGTTAGGTTCAGGAAGCAGGTCTTCACAACCTGCATAGCTA  50

seq1  GAGTCTTGGAGATGCGGCTTTACCATGGCCCAGTTTGCACAGGCCTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGGAGATGCGGCTTTACCATGGCCCAGTTTGCACAGGCCTAAAA  100

seq1  ATTAAGTAAAAGAAGAAAGAGAGGGAGGAAGCTGGCAAGAAAAGAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTAAAAGAAGAAAGAGAGGGAGGAAGCTGGCAAGAAAAGAAAGAC  150

seq1  AGGAGTGAGAGAATAAAGGAGAAGGAAAGAAATAAAAGGAACAATATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGAGAGAATAAAGGAGAAGGAAAGAAATAAAAGGAACAATATGCC  200

seq1  TGTGGAAGTAGGTTGCCCATTCTTCACATTCAAAGTCAATGAGTTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGTAGGTTGCCCATTCTTCACATTCAAAGTCAATGAGTTTTAAG  250

seq1  GGAGAGGGGAGGAAAGGCCATCGTAAGGCAGCTGGCGTTCCTCCGCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGGAGGAAAGGCCATCGTAAGGCAGCTGGCGTTCCTCCGCCCAC  300

seq1  CAGTGTCAGGAGGGGTGTCTATAGCCAGAGGCTCTGACAGAAGCACTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGGAGGGGTGTCTATAGCCAGAGGCTCTGACAGAAGCACTGTG  350

seq1  TGGGCAGCGGGGTGCTCTGCTGACCAAGCTGGGCCAAAGCAGATACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCGGGGTGCTCTGCTGACCAAGCTGGGCCAAAGCAGATACAGCA  400

seq1  GCTGGTGAGCTGCTGCCAGCCAGAGGCAGCAGCAGGTAGAGACACAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGAGCTGCTGCCAGCCAGAGGCAGCAGCAGGTAGAGACACAGAGC  450

seq1  CAGCGTCCCTGAGTTCGTGATTATTCATCCTTAATGGCTAGTCAGCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTCCCTGAGTTCGTGATTATTCATCCTTAATGGCTAGTCAGCACAT  500

seq1  TTCCAGCCCTGTCCACCACAGTGACATGCTGACTTTTGCAGTGTCAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCCTGTCCACCACAGTGACATGCTGACTTTTGCAGTGTCAATTT  550

seq1  GCCATCCTTTATCCTCAGCAACATATATATGTATCCTTCTCCACTCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTTTATCCTCAGCAACATATATATGTATCCTTCTCCACTCTCTA  600

seq1  TTCACCTCTCCAGAGGGGTCAAAATAAGTGGATGAGAGTGCAAGAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCTCCAGAGGGGTCAAAATAAGTGGATGAGAGTGCAAGAATACA  650

seq1  TTGTGTTTATGATACATTCTTCCTAAGCCACTGGAAGCATGCTCTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTATGATACATTCTTCCTAAGCCACTGGAAGCATGCTCTCTTTC  700

seq1  CATTTGTTCTCATTTTCCTCACCTCCTAGTACTCTGCCAAAGACTCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTCTCATTTTCCTCACCTCCTAGTACTCTGCCAAAGACTCCTTT  750

seq1  AGTGTATATATTTGAATAATACCTTTTACAGATTTTTCTTCATGCCCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATATATTTGAATAATACCTTTTACAGATTTTTCTTCATGCCCGAA  800

seq1  CTAAATGGAACATTTCACATTTTTCTAGATGCGTGAATCCTGGAGCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGAACATTTCACATTTTTCTAGATGCGTGAATCCTGGAGCACAA  850

seq1  TACGCATGGGACAGAATTCGGCTCCTTAGTCAGTTCAGACAGAGCAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCATGGGACAGAATTCGGCTCCTTAGTCAGTTCAGACAGAGCAGTGT  900

seq1  TCATGCCACAAATGAAGATGTGAATTTGTTTTGATGCAACAAG-AAGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCATGCCACAAATGAAGATGTGAATTTGTTTTGATGCAACAAGAAAGTTT  950

seq1  CAGAGTCTACAGATAGGTTGTAGCCATCTCAGTGTTCCTATGCAGATAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTACAGATAGGTTGTAGCCATCTCAGTGTTCCTATGCAGATAAC  1000

seq1  TAGAGATTTACCCACTAGATGATGGGT-GTGCCTT-ATCTCAGTGCTTCC  1047
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  TAGAGATTTACCCACTAGATGATGGGTGGTGCCTTAATCTCAGTGCTTCC  1050

seq1  CTTAAGGGAGGAAAAACAAGGGCAATTATTTGA-GTGATACTAATTCTTC  1096
        || |||||||||| ||||| ||||||||||| ||||||||||||| | 
seq2  --TACGGGAGGAAAATCAAGGCCAATTATTTGAGGTGATACTAATTCCTA  1098

seq1  CCAAGTGATGCTTAT-GTGAAGTACTT  1122
      |||||||||||| || |||||||||||
seq2  CCAAGTGATGCTAATGGTGAAGTACTT  1125


seq1: chr16_42287038_42288131
seq2: B6Ng01-345L02.g_67_1163 (reverse)

seq1  TTCAGTTTTTATGAGTTGTGTAT-AAATCTGAGAAGTGGTTGAAGCCACA  49
      ||||| ||||||||| ||||||| |||||||   ||| || |||| ||||
seq2  TTCAGGTTTTATGAG-TGTGTATAAAATCTGGAGAGT-GTGGAAG-CACA  47

seq1  TTTC-AAATCTAAACCTTTTCGGAGGCATCC-TGCCAAGCAATCATACTA  97
      |||| ||||||||  |||||||||||||||| ||| | ||||||||||| 
seq2  TTTCAAAATCTAA--CTTTTCGGAGGCATCCTTGCAAGGCAATCATACT-  94

seq1  ACACTCTAACACAGA--GAAACTGGTTTGTCTTTTCG-AAAGCTACAGAG  144
      ||||||| |||||||   ||||||||||||||||||| ||||||||||||
seq2  ACACTCT-ACACAGAAGAAAACTGGTTTGTCTTTTCGAAAAGCTACAGAG  143

seq1  TTGG-AGGGGTCTATC-TCTAACAT-AAATAATTTCTCTAAATCTGTATA  191
      |||| ||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TTGGAAGGGGTCTATCTTCTAACATAAAATAATTTCTCTAAATCTGTATA  193

seq1  CACACACTGGATTTTTCAGTTTTGAAAAACATAATTATTTTAG-AAACTA  240
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACACACTGGATTTTTCAGTTTTGAAAAACATAATTATTTTAGAAAACTA  243

seq1  TTAATGTTCATCTGCTCTTAACAGCTATCTATATATACATGATACAAAGG  290
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAATGTTCATCTGCTCTT-ACAGCTATCTATATATACATGATACAAAGG  292

seq1  GTTTTTTAAATATAATAGGTT-AAATTGCATCTGAGTCACGGAAGCAGTG  339
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTTTTAAATATAATAGGTTAAAATTGCATCTGAGTCACGGAAGCAGTG  342

seq1  TTTGTTTGTTTGTTTGTTTGTTTTTGTTTTAAAGTATTCCATACTTATTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTGTTTGTTTTTGTTTTAAAGTATTCCATACTTATTT  392

seq1  GCATGATTCAGTTGAGATTATTATTGGGATTATTTTAAATGCCACTCTCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTCAGTTGAGATTATTATTGGGATTATTTTAAATGCCACTCTCT  442

seq1  GGATTTTATCATGCTTTCCTTAACAAATCAGATTGTCTGTCTATCAAAGG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTATCATGCTTTCCTTAACAAATCAGATTGTCTGTCTATCAAAGG  492

seq1  AGCACATCTTTTGACTCTTTGTGGCATGGACTCCTATTACACTAGAAGCT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCTTTTGACTCTTTGTGGCATGGACTCCTATTACACTAGAAGCT  542

seq1  ATTCTAAATATTCTAGAAGGAAGTAAATATGAAATTATAAAGGGAGGAGA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATATTCTAGAAGGAAGTAAATATGAAATTATAAAGGGAGGAGA  592

seq1  GGAAGGAAAGGTGAAAGAGGAGAGAAGTACAAAGATAATAAGTTAATATT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAAGGTGAAAGAGGAGAGAAGTACAAAGATAATAAGTTAATATT  642

seq1  TTTCTCTTTCAGCAGAGAATTGCAAAACAAATGTAAACCTCCCTGTTCCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCAGCAGAGAATTGCAAAACAAATGTAAACCTCCCTGTTCCC  692

seq1  CTGATCCGTATTGATAATCTTAGTTTGAAAGATGTAATGAGACTATAGCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCGTATTGATAATCTTAGTTTGAAAGATGTAATGAGACTATAGCA  742

seq1  ATACAGTGTAGCCCTGGCAAGGTGGCTCAGTGTGTAAAGTCGCCTGATGC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTGTAGCCCTGGCAAGGTGGCTCAGTGTGTAAAGTCGCCTGATGC  792

seq1  CAAGTCTGATGTCCTGAATTTGATCTCCAGTATCCACATGGAGGGATGAG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGATGTCCTGAATTTGATCTCCAGTATCCACATGGAGGGATGAG  842

seq1  AGAACTGGCTCTGTCCAGTGGTCCCATCGGTCCCTTGTCCTCTACACCCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGCTCTGTCCAGTGGTCCCATCGGTCCCTTGTCCTCTACACCCA  892

seq1  CATGGCAACCACACCATCCCTAACACACCTCATATATGTGAGCATATTTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAACCACACCATCCCTAACACACCTCATATATGTGAGCATATTTT  942

seq1  TTTTTTAAATTAAAACAGACAAATGAAATTTAACCAAATCAACAGGCAGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTAAAACAGACAAATGAAATTTAACCAAATCAACAGGCAGA  992

seq1  ATGCTTAGGTGACATTGCTAACACTATAGCAGCAGATGTTTTAGGGTCGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGGTGACATTGCTAACACTATAGCAGCAGATGTTTTAGGGTCGT  1042

seq1  CTTTGAGGAAAATCCATGAGCAGTAGAGGTGGTGAGGGACAGAAGCAGAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGAAAATCCATGAGCAGTAGAGGTGGTGAGGGACAGAAGCAGAG  1092

seq1  AATTC  1094
      |||||
seq2  AATTC  1097


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