BAC Information

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BAC

Clone NameB6Ng01-345N18
Chromosome16 (Build37)
Map Location 92,018,345 - 92,157,519
singlet/doubletdoublet
Overlap geneMrps6, Slc5a3
Upstream gene1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o
Downstream geneKcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345N18.bB6Ng01-345N18.g
ACCGA127925GA127926
length988966
definitionB6Ng01-345N18.b B6Ng01-345N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,018,345 - 92,019,326)(92,156,565 - 92,157,519)
sequence
gaattctttgcttacatttgtttgactaatttttttttcttgtgacactg
aggccaaggggatacttttctaggggtgtcttagggtttctaacaaacat
catgaccaaaaagcaagctggggaggaaagggtttattgggcttacactt
ccatactactgttcatcaccaaaggaagtcaggactggaactcaagcagg
tcaggaagcaggagctgatgcagaggccatggagggatgttctttactgg
cttgcttcccctggcttgctcatcctgctctcttatagaactcaagacta
ccagcacagagatggtcccacccacaaggggcctttcccccttgatcact
aattgagaaaatgccttacagctggatctcatggaggcatttcctcaact
gaagcgcctttctctgtgataactccagctgtgtcaagttgacacaaaac
tagccagtacagagggatatacatataactaaaaccctttgcttttatta
tattagatgctatggtggcacatacctttaatcccagtacttgggagaca
aaagtaggcagctggctgtgagtttgtgaccagcttgttttatagagtga
cttccagggtagccagggctatgtaaagagaccctgcctcaactgtcccc
cagagacatttctaaaaaggtgtagtagtgtaccatttttccccttctga
agtttgtttctaagggtgtcttgttgtctttcatcttaagaaaattgtct
agcttttatttctaagtaaaaattttccatagttctcaaacagaaaggaa
aatactactgcagagaatttttctttttctctcttctgcattgcaaggaa
ctgtggtggttaaagaactccaccctcctaaaggcgccccaagcattttg
tgttcttttgaaatcggaagatgaaggaaatgggaagttctagggctctg
taaaatgtgagcagcatgcaggagtcaggtatcatgag
gaattccaggtagatcaccatgccacccggaatcagtgagggtttctagg
gatctgaactatggtcctcaaacttccaatggctttaacagccaagctac
ctccccagcagttaaaacaatttttaatgaagcaaatgacaaaattgcct
gcctgaagatgaaatagaatcacctattataaaaaaaaatgtttgagcaa
gttaaaagcctgcattctgatttcctccatattatcttctggggaggggg
agagcatggcgggggaggcggaggaaggatgcattttcccaagttttcag
ctaaaagtcagtcagcccaaggcccactcaggtaccagttactgaggggc
ctgggactgcctcaagtttcttgactagaaagacttagacacgggacgcg
agggtgccagagagctggaggcgtccagtccctgtgttgtttcccggtgc
ttccagtcactgttctgcagggctttgaggcaccatggaagccataggaa
gctgtggatgacaggatggagtccttagatctagaataggctccttggtc
tgggagccaacaccaatcctggctctgccatcttccacatggtgggggag
tacaagccaaggcttttgcaggagtccattttcttatgtaaccaatgggg
gttagtgaaaaaacccattgagtcagctaatgcatatgtgaccctgagga
ggaacctgtgctcagagagcatcaactgcacagaagaggagaaagggaaa
ccatgttccatgaatacagagctctgcctggagtggcaggacagggacag
ggaaatgctgccccagatgacagggatgggaaacacaaataaatgggttt
gaagggggagcctgattatagagcaagctggtggttgtgccccacatcac
cattcccaagatattgagtgggttcaaagataggggtgatgcttgacatt
ttgtgtaccacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92018345_92019326
seq2: B6Ng01-345N18.b_47_1034

seq1  GAATTCTTTGCTTACATTTGTTTGACTAATTTTTTTTTCTTGTGACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTACATTTGTTTGACTAATTTTTTTTTCTTGTGACACTG  50

seq1  AGGCCAAGGGGATACTTTTCTAGGGGTGTCTTAGGGTTTCTAACAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAGGGGATACTTTTCTAGGGGTGTCTTAGGGTTTCTAACAAACAT  100

seq1  CATGACCAAAAAGCAAGCTGGGGAGGAAAGGGTTTATTGGGCTTACACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAAAAGCAAGCTGGGGAGGAAAGGGTTTATTGGGCTTACACTT  150

seq1  CCATACTACTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTACTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAGCAGG  200

seq1  TCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGG  250

seq1  CTTGCTTCCCCTGGCTTGCTCATCCTGCTCTCTTATAGAACTCAAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCCCTGGCTTGCTCATCCTGCTCTCTTATAGAACTCAAGACTA  300

seq1  CCAGCACAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAGAGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATCACT  350

seq1  AATTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCATTTCCTCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGAAAATGCCTTACAGCTGGATCTCATGGAGGCATTTCCTCAACT  400

seq1  GAAGCGCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGCCTTTCTCTGTGATAACTCCAGCTGTGTCAAGTTGACACAAAAC  450

seq1  TAGCCAGTACAGAGGGATATACATATAACTAAAACCCTTTGCTTTTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGTACAGAGGGATATACATATAACTAAAACCCTTTGCTTTTATTA  500

seq1  TATTAGATGCTATGGTGGCACATACCTTTAATCCCAGTACTTGGGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATGCTATGGTGGCACATACCTTTAATCCCAGTACTTGGGAGACA  550

seq1  AAAGTAGGCAGCTGGCTGTGAGTTTGTGACCAGCTTGTTTTATAGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGGCAGCTGGCTGTGAGTTTGTGACCAGCTTGTTTTATAGAGTGA  600

seq1  CTTCCAGGGTAGCCAGGGCTATGTAAAGAGACCCTGCCTCAACTGTCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGGTAGCCAGGGCTATGTAAAGAGACCCTGCCTCAACTGTCCCC  650

seq1  CAGAGACATTTCTAAAAAGGTGTAGTAGTGTACCATTTTTCCCCTTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACATTTCTAAAAAGGTGTAGTAGTGTACCATTTTTCCCCTTCTGA  700

seq1  AGTTTGTTTCTAAGGGTGTCTTGTTGTCTTTCATCTTAAGAAAATTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTTCTAAGGGTGTCTTGTTGTCTTTCATCTTAAGAAAATTGTCT  750

seq1  AGCTTTTATTTCTAAGTAAAAATTTTCCATAGTTCTCAAACAGAAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTATTTCTAAGTAAAAATTTTCCATAGTTCTCAAACAGAAAGGAA  800

seq1  AA-ACTACTGCAGAGAATTTT--CTTTTCTCTCTTCTGCATTGCAAGGAA  847
      || ||||||||||||||||||   ||||||||||||||||||||||||||
seq2  AATACTACTGCAGAGAATTTTTCTTTTTCTCTCTTCTGCATTGCAAGGAA  850

seq1  CTGTGGTGGTTAAAGAAC-CCA-CCTCCTAAAGGCG-CCCAAGCA-TTTG  893
      |||||||||||||||||| ||| ||||||||||||| |||||||| ||||
seq2  CTGTGGTGGTTAAAGAACTCCACCCTCCTAAAGGCGCCCCAAGCATTTTG  900

seq1  TGTTCTTT--GAATCGGAAGAATGGAGGGAAATGGAAGTTTCTAGGGGCC  941
      ||||||||   ||||||||||   || |||||||| |  ||||| |||| 
seq2  TGTTCTTTTGAAATCGGAAGA--TGAAGGAAATGGGAAGTTCTA-GGGCT  947

seq1  CTGTAAAATGGGAGCAGGATGCAGGATGCAGGTATCATGAG  982
      |||||||||| |||||| ||||||||  |||||||||||||
seq2  CTGTAAAATGTGAGCAGCATGCAGGAGTCAGGTATCATGAG  988

seq1: chr16_92156565_92157519
seq2: B6Ng01-345N18.g_67_1032 (reverse)

seq1  TGTGTGTGTCAC---AAATGTC-AGCATCA-CCCTATCTTTGAA-CCACT  44
      ||||||||  ||   ||||||| ||||||| ||||||||||||| |||||
seq2  TGTGTGTGGTACACAAAATGTCAAGCATCACCCCTATCTTTGAACCCACT  50

seq1  C-ATATCTTGGG-ATGGTGATGTGGGGCAC-ACCACCTGCTTGCTCTATA  91
      | |||||||||| ||||||||||||||||| |||||| ||||||||||||
seq2  CAATATCTTGGGAATGGTGATGTGGGGCACAACCACCAGCTTGCTCTATA  100

seq1  ATCAGGCTCCCCCTTCAAA-CCATTTATTTGTGTTTCCCATCCCTGTCAT  140
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCAGGCTCCCCCTTCAAACCCATTTATTTGTGTTTCCCATCCCTGTCAT  150

seq1  CTGGGGCAGCATTTCCCTGTCCCTGTCCTGCCACTCCAGGCAGAGCTCTG  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCAGCATTTCCCTGTCCCTGTCCTGCCACTCCAGGCAGAGCTCTG  200

seq1  TATTCATGGAACATGGTTTCCC-TTCTCCTCTTCTGTGCAGTTGATGCTC  239
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TATTCATGGAACATGGTTTCCCTTTCTCCTCTTCTGTGCAGTTGATGCTC  250

seq1  TCTGAGCACAGGTTCCTCCTCAGGGTCACATATGCATTAGCTGACTCAAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCACAGGTTCCTCCTCAGGGTCACATATGCATTAGCTGACTCAAT  300

seq1  GGGTTTTTTCACTAACCCCCATTGGTTACATAAGAAAATGGACTCCTGCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTCACTAACCCCCATTGGTTACATAAGAAAATGGACTCCTGCA  350

seq1  AAAGCCTTGGCTTGTACTCCCCCACCATGTGGAAGATGGCAGAGCCAGGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTTGGCTTGTACTCCCCCACCATGTGGAAGATGGCAGAGCCAGGA  400

seq1  TTGGTGTTGGCTCCCAGACCAAGGAGCCTATTCTAGATCTAAGGACTCCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTGGCTCCCAGACCAAGGAGCCTATTCTAGATCTAAGGACTCCA  450

seq1  TCCTGTCATCCACAGCTTCCTATGGCTTCCATGGTGCCTCAAAGCCCTGC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCATCCACAGCTTCCTATGGCTTCCATGGTGCCTCAAAGCCCTGC  500

seq1  AGAACAGTGACTGGAAGCACCGGGAAACAACACAGGGACTGGACGCCTCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTGACTGGAAGCACCGGGAAACAACACAGGGACTGGACGCCTCC  550

seq1  AGCTCTCTGGCACCCTCGCGTCCCGTGTCTAAGTCTTTCTAGTCAAGAAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTGGCACCCTCGCGTCCCGTGTCTAAGTCTTTCTAGTCAAGAAA  600

seq1  CTTGAGGCAGTCCCAGGCCCCTCAGTAACTGGTACCTGAGTGGGCCTTGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGCAGTCCCAGGCCCCTCAGTAACTGGTACCTGAGTGGGCCTTGG  650

seq1  GCTGACTGACTTTTAGCTGAAAACTTGGGAAAATGCATCCTTCCTCCGCC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGACTTTTAGCTGAAAACTTGGGAAAATGCATCCTTCCTCCGCC  700

seq1  TCCCCCGCCATGCTCTCCCCCTCCCCAGAAGATAATATGGAGGAAATCAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGCCATGCTCTCCCCCTCCCCAGAAGATAATATGGAGGAAATCAG  750

seq1  AATGCAGGCTTTTAACTTGCTCAAACATTTTTTTTTATAATAGGTGATTC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGCTTTTAACTTGCTCAAACATTTTTTTTTATAATAGGTGATTC  800

seq1  TATTTCATCTTCAGGCAGGCAATTTTGTCATTTGCTTCATTAAAAATTGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCTTCAGGCAGGCAATTTTGTCATTTGCTTCATTAAAAATTGT  850

seq1  TTTAACTGCTGGGGAGGTAGCTTGGCTGTTAAAGCCATTGGAAGTTTGAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTGCTGGGGAGGTAGCTTGGCTGTTAAAGCCATTGGAAGTTTGAG  900

seq1  GACCATAGTTCAGATCCCTAGAAACCCTCACTGATTCCGGGTGGCATGGT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATAGTTCAGATCCCTAGAAACCCTCACTGATTCCGGGTGGCATGGT  950

seq1  GATCTACCTGGAATTC  955
      ||||||||||||||||
seq2  GATCTACCTGGAATTC  966