BAC Information

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BAC

Clone NameB6Ng01-346F24
Chromosome16 (Build37)
Map Location 88,282,822 - 88,334,038
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346F24.bB6Ng01-346F24.g
ACCGA128291GA128292
length1,1841,178
definitionB6Ng01-346F24.b B6Ng01-346F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,282,822 - 88,284,016)(88,332,851 - 88,334,038)
sequence
gaattctttgcaaacagattgttgtaaatttccattcaaggacatcagca
cttaaccatctttaacagagtatattccaatgcctgaatcaatattcata
gttaaattacatttaattaagtatgaaaaaagcatgcacatgttggaacc
caagaagttaatggctgattctccataatctatttgcagaattctcagga
aggcatatagacatttttgtctgtagtaggttttatacaaagtttatttt
gttaacaattttctaacagtaactgctgttgtttttattttgaggagatc
ctttaaaaacacactatttagcatactatatagaaaaggatttttttcta
tttatcttaatagatttacttacagaactttatgtactgagaggaggtaa
ttccagaagacctggcatgctttgaggcttctggttttaatgtattttac
ttcttaataaggttttaatttatcaaaacattgagtaaatagcccacaga
attctcatatacagcaatgtatcacatacaccaatatactcaatgtctca
cacaccccaatatactcaatgtctcacatacaccaatatactcaatgtct
catgtaccccaatatactcaatgtctcacatatactagtatactcaatga
ctcctgttatttacttcatgaagtactgtggcatatttgtcaagataaaa
agccactataaatgattataaataataaatgtttgtttttatgcaaagtg
cttagattttacctcacatctttttctgttctgggatcttatacggatgc
tagtttacatttttttttctcattgtctttcagtaggcttgactgcagtg
tgactgttctatgctttccacgaccttggctctcctaataaaggattggt
agtctagtttgaagttataccttctgctggaatttgtctgctcttttacc
atctgtggagtagggaaggagggccaggcagtcaaggttccttttctacc
acactaatgacttgctgccctgaactacatgaccctcaccctttcctccc
cactttcctccccccttggaaacttgaccttgaacttgacttgacttgcc
gcatcagtgcagatgatggtcatcctgttctaggaacatcttgctttgag
actctggccggttagttgccaagaagctcttggg
gaattcagatggtttcctcacccgctgtgctgctcgttaagcattccgat
gggttgcctaaaaatataaaccctgtcagataaaaatatatccattcaaa
tgactctcttcaccccaggttcaatgtgcaacatgtaatgtatgtgggaa
aaagaatacctagaccggggaaaagaaaatgagctttataataaaaatac
tgttttctaagctagaatagtcgcattaattatgcagccagtgttacttt
gcttaaattaccacagcctctgcatttgaagagccttattaaatagttat
gtccctgtatatttaaaggaagagagttttattcatttgattaaactatt
tttattgtgtaggattgcagtataatcatcttctgtgtttgactatttct
cccatctcccatctagtcccatctacaacttcccttgaaggaaaaatatg
cagcaaggaaactgatattattttagccacataaacttaccaaagcaaat
gcattgtaatttccagatgattctcttaaaaaaaaaatcattgatataga
gaactggaataaaattgacagctcctctctgaggaaagtttctcatgagc
ttgttggtctctgaggatttgttgaaagcaatcctgaatatcagtcaaat
gctgctcccttccaggatgaattcattttagttgacaaagtgaagctcct
ctctgcttcaattctcatcatgtaagcaagcttgccagttcctgggggag
gcagcaggctacagggcattcttctttgggaaatttgagcaagaaataat
tagctgtgcaccttcgaacaagctcttgacatgggagaagtggctttgtg
tctctgtaaaggtgattgccctaatgtgctgttacatgtatcaaaagcaa
ggactgtcagcgcctcatgaaaagcttagcttttgcttggctttcatgga
ccactttttttttttaagttggtgtttgtagcttagttattacaatgtca
cctattgctttgatggatttttctaggtgtcattgtgagatgttccctga
ttttgggaaagaagagctaattaaatgggtagagtagcatagccctcctg
atatttctggtgtagtcttagcataaccgacagagttatggtaagtttga
tgcccacaatgaatagttcaactcacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88282822_88284016
seq2: B6Ng01-346F24.b_45_1228

seq1  GAATTCTTTGCAAACAGATTGTTGTAAATTTCCATTCAAGGACATCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAAACAGATTGTTGTAAATTTCCATTCAAGGACATCAGCA  50

seq1  CTTAACCATCTTTAACAGAGTATATTCCAATGCCTGAATCAATATTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCATCTTTAACAGAGTATATTCCAATGCCTGAATCAATATTCATA  100

seq1  GTTAAATTACATTTAATTAAGTATGAAAAAAGCATGCACATGTTGGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTACATTTAATTAAGTATGAAAAAAGCATGCACATGTTGGAACC  150

seq1  CAAGAAGTTAATGGCTGATTCTCCATAATCTATTTGCAGAATTCTCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTTAATGGCTGATTCTCCATAATCTATTTGCAGAATTCTCAGGA  200

seq1  AGGCATATAGACATTTTTGTCTGTAGTAGGTTTTATACAAAGTTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATAGACATTTTTGTCTGTAGTAGGTTTTATACAAAGTTTATTTT  250

seq1  GTTAACAATTTTCTAACAGTAACTGCTGTTGTTTTTATTTTGAGGAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAATTTTCTAACAGTAACTGCTGTTGTTTTTATTTTGAGGAGATC  300

seq1  CTTTAAAAACACACTATTTAGCATACTATATAGAAAAGGATTTTTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAACACACTATTTAGCATACTATATAGAAAAGGATTTTTTTCTA  350

seq1  TTTATCTTAATAGATTTACTTACAGAACTTTATGTACTGAGAGGAGGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTAATAGATTTACTTACAGAACTTTATGTACTGAGAGGAGGTAA  400

seq1  TTCCAGAAGACCTGGCATGCTTTGAGGCTTCTGGTTTTAATGTATTTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAGACCTGGCATGCTTTGAGGCTTCTGGTTTTAATGTATTTTAC  450

seq1  TTCTTAATAAGGTTTTAATTTATCAAAACATTGAGTAAATAGCCCACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATAAGGTTTTAATTTATCAAAACATTGAGTAAATAGCCCACAGA  500

seq1  ATTCTCATATACAGCAATGTATCACATACACCAATATACTCAATGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCATATACAGCAATGTATCACATACACCAATATACTCAATGTCTCA  550

seq1  CACACCCCAATATACTCAATGTCTCACATACACCAATATACTCAATGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCAATATACTCAATGTCTCACATACACCAATATACTCAATGTCT  600

seq1  CATGTACCCCAATATACTCAATGTCTCACATATACTAGTATACTCAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACCCCAATATACTCAATGTCTCACATATACTAGTATACTCAATGA  650

seq1  CTCCTGTTATTTACTTCATGAAGTACTGTGGCATATTTGTCAAGATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTATTTACTTCATGAAGTACTGTGGCATATTTGTCAAGATAAAA  700

seq1  AGCCACTATAAATGATTATAAATAATAAATGTTTGTTTTTATGCAAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTATAAATGATTATAAATAATAAATGTTTGTTTTTATGCAAAGTG  750

seq1  CTTAGATTTTACCTCACATCTTTTTCTGTTCTGGGATCTTATACGGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTTTACCTCACATCTTTTTCTGTTCTGGGATCTTATACGGATGC  800

seq1  TAGTTTACA-TTTTTTTTCTCATTGTCTTTCAGTAGGCTTGACTGCAGTG  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTACATTTTTTTTTCTCATTGTCTTTCAGTAGGCTTGACTGCAGTG  850

seq1  TGACTGTTCTATGCTTTCCACGACCTTGGCTCTCCTAAT-AAGGATTGGT  898
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGACTGTTCTATGCTTTCCACGACCTTGGCTCTCCTAATAAAGGATTGGT  900

seq1  AGTCTAGTTTGAAGTTATACCTTCTGCTGGAATTTGTCTGCTCTTTTACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGTTTGAAGTTATACCTTCTGCTGGAATTTGTCTGCTCTTTTACC  950

seq1  ATCTGTGGAGTAGGGAAGGAGGGCCAGGCAGTCAAGGTTCCTTTTCTACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGAGTAGGGAAGGAGGGCCAGGCAGTCAAGGTTCCTTTTCTACC  1000

seq1  ACACTAATGACTTGCTGCCCTGAACTACAATGACCCTCACCCCTTTCCTC  1048
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  ACACTAATGACTTGCTGCCCTGAACTAC-ATGACCCTCA-CCCTTTCCTC  1048

seq1  CCCACTTT-CTCCCCCCTTGGGAAACTTGACCTTGAACTTGACTTGAACT  1097
      |||||||| |||||||||| |||||||||||||||||||||||||| |||
seq2  CCCACTTTCCTCCCCCCTT-GGAAACTTGACCTTGAACTTGACTTG-ACT  1096

seq1  TTGCCCGCATTCAGTGCAGATGATGGTCATCCCTGGTTCTAGAACCATCC  1147
      |   ||||| ||||||||||||||||||||||   ||||||| | |||| 
seq2  T--GCCGCA-TCAGTGCAGATGATGGTCATCC--TGTTCTAGGAACATC-  1140

seq1  TTTGCTCTGAGAACTCTTGCGTGTTTAGTTGCACAGGGAGCTCTTGGG  1195
       ||||| |||| ||||| ||  | |||||||| || | ||||||||||
seq2  -TTGCTTTGAG-ACTCTGGC-CGGTTAGTTGC-CAAGAAGCTCTTGGG  1184

seq1: chr16_88332851_88334038
seq2: B6Ng01-346F24.g_68_1245 (reverse)

seq1  TTGT-AGTTGATTTATTCATTGTGGGCATCAAACTTTACATAACTTCTTG  49
      |||| ||||||  |||||||||||||||||||||||  |||||| |||  
seq2  TTGTGAGTTGAACTATTCATTGTGGGCATCAAACTTACCATAAC-TCT--  47

seq1  GTCTGTTAT-CTTAGACTACACCAAGAAATAATCAAGGAGGCTATGCTAC  98
      ||| ||||| || |||||||||| |||||| |||| |  |||||||||||
seq2  GTCGGTTATGCTAAGACTACACC-AGAAAT-ATCAGGAGGGCTATGCTAC  95

seq1  CTTCCTACCCATTTTAATTAGCTCCTTCTTTCCCAAAATTCAGGGAACAT  148
          ||||||| ||||||||||| |||||||||||||| |||||||||||
seq2  ---TCTACCCA-TTTAATTAGCT-CTTCTTTCCCAAAA-TCAGGGAACAT  139

seq1  CTCACAATGACACCTAGAAAAATCCATCAAAGCAATAGGTGACATTGTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATGACACCTAGAAAAATCCATCAAAGCAATAGGTGACATTGTAA  189

seq1  TAACTAAGCTACAAACACCAACTTAAAAAAAAAAAAGTGGTCCATGAAAG  248
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TAACTAAGCTACAAACACCAACTT-AAAAAAAAAAAGTGGTCCATGAAAG  238

seq1  CCAAGCAAAAGCTAAGCTTTTCATGAGGCGCTGACAGTCCTTGCTTTTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAAAAGCTAAGCTTTTCATGAGGCGCTGACAGTCCTTGCTTTTGA  288

seq1  TACATGTAACAGCACATTAGGGCAATCACCTTTACAGAGACACAAAGCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTAACAGCACATTAGGGCAATCACCTTTACAGAGACACAAAGCCA  338

seq1  CTTCTCCCATGTCAAGAGCTTGTTCGAAGGTGCACAGCTAATTATTTCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCATGTCAAGAGCTTGTTCGAAGGTGCACAGCTAATTATTTCTT  388

seq1  GCTCAAATTTCCCAAAGAAGAATGCCCTGTAGCCTGCTGCCTCCCCCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATTTCCCAAAGAAGAATGCCCTGTAGCCTGCTGCCTCCCCCAGG  438

seq1  AACTGGCAAGCTTGCTTACATGATGAGAATTGAAGCAGAGAGGAGCTTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCAAGCTTGCTTACATGATGAGAATTGAAGCAGAGAGGAGCTTCA  488

seq1  CTTTGTCAACTAAAATGAATTCATCCTGGAAGGGAGCAGCATTTGACTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAACTAAAATGAATTCATCCTGGAAGGGAGCAGCATTTGACTGA  538

seq1  TATTCAGGATTGCTTTCAACAAATCCTCAGAGACCAACAAGCTCATGAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGATTGCTTTCAACAAATCCTCAGAGACCAACAAGCTCATGAGA  588

seq1  AACTTTCCTCAGAGAGGAGCTGTCAATTTTATTCCAGTTCTCTATATCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTCAGAGAGGAGCTGTCAATTTTATTCCAGTTCTCTATATCAA  638

seq1  TGATTTTTTTTTTAAGAGAATCATCTGGAAATTACAATGCATTTGCTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTTTTAAGAGAATCATCTGGAAATTACAATGCATTTGCTTTG  688

seq1  GTAAGTTTATGTGGCTAAAATAATATCAGTTTCCTTGCTGCATATTTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTTATGTGGCTAAAATAATATCAGTTTCCTTGCTGCATATTTTTC  738

seq1  CTTCAAGGGAAGTTGTAGATGGGACTAGATGGGAGATGGGAGAAATAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGGAAGTTGTAGATGGGACTAGATGGGAGATGGGAGAAATAGTC  788

seq1  AAACACAGAAGATGATTATACTGCAATCCTACACAATAAAAATAGTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAAGATGATTATACTGCAATCCTACACAATAAAAATAGTTTAA  838

seq1  TCAAATGAATAAAACTCTCTTCCTTTAAATATACAGGGACATAACTATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGAATAAAACTCTCTTCCTTTAAATATACAGGGACATAACTATTT  888

seq1  AATAAGGCTCTTCAAATGCAGAGGCTGTGGTAATTTAAGCAAAGTAACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCTCTTCAAATGCAGAGGCTGTGGTAATTTAAGCAAAGTAACAC  938

seq1  TGGCTGCATAATTAATGCGACTATTCTAGCTTAGAAAACAGTATTTTTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCATAATTAATGCGACTATTCTAGCTTAGAAAACAGTATTTTTAT  988

seq1  TATAAAGCTCATTTTCTTTTCCCCGGTCTAGGTATTCTTTTTCCCACATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCTCATTTTCTTTTCCCCGGTCTAGGTATTCTTTTTCCCACATA  1038

seq1  CATTACATGTTGCACATTGAACCTGGGGTGAAGAGAGTCATTTGAATGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATGTTGCACATTGAACCTGGGGTGAAGAGAGTCATTTGAATGGA  1088

seq1  TATATTTTTATCTGACAGGGTTTATATTTTTAGGCAACCCATCGGAATGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTATCTGACAGGGTTTATATTTTTAGGCAACCCATCGGAATGC  1138

seq1  TTAACGAGCAGCACAGCGGGTGAGGAAACCATCTGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGAGCAGCACAGCGGGTGAGGAAACCATCTGAATTC  1178