BAC Information

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BAC

Clone NameB6Ng01-348F10
Chromosome16 (Build37)
Map Location 89,517,858 - 89,518,995
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348F10.g
ACCGA129658
length1,133
definitionB6Ng01-348F10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatatccttttcccttagctccaacctcacacttccagcagtgac
cagggaagcgagggaaatgccttgcacacaaaggatgttcactaagaaga
aatatatttgataagtactcttcttttgagtgaaactggaactttaatag
cgattaaaaaaaaagattctccaggtaagatgttgatttgtttaatacta
gtttttgagtacgctccgagagaaagagagagagagagagagagagagag
agagagagagagagagagagagagagagagagagatattacaacgaagag
ggagccgatagaggaaatttattgaacgttttggacataacatcagtata
cagacagaaccacgctctgatttggagatgaaagagtgcgttggatttca
aaataaacaaattcaggctaggtcctgttgtttcctttctaatctatttt
tgaaataacagaagcagcagcagcaatatcaataaagatgctgataatct
agacaacaacacacagtttctttccttgagaaactggggaaatatattct
tggacttaactgagccaaaagatttctccggatttctctctaaactccac
gccatgttctccactgataaaatcaagggaacatacagtacagacttagc
aagagacagcatccggataattgttctgggacattctgctcgcacaagaa
acatagctgtgttgaatctgaaatgtttaataaaatcgtgtcggctcttc
taactacattttctggggtcactctattggcctctgtctacacgttccct
gaggagatactgcccaaagtcggcccaaagttggcaaagggctcaagcaa
gacattcatccaccaagggtaacactagtgcctgggtcgacactgagcat
gcaggtgatggtgatgatcctacagagggcagcagagtcccgttcaagag
tccatgtctgtactgtatgtttgggctgtgattaaaacagagacacgatt
ttgttaatcaattagcatcattcataatatatcaaaatgccttacagatc
cactatatttctgggtatattagatccaaactctcagtcgcgtaatggat
ttttctcgatgtgccttcccctcccccagtgtg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89517858_89518995
seq2: B6Ng01-348F10.g_64_1196 (reverse)

seq1  CACA-TGGGGGAGGGGAAGGCACATCTGAGAAAAAACATCCAATACGCGG  49
      |||| ||||||||||||||||||||| |||||||   ||||| |||||| 
seq2  CACACTGGGGGAGGGGAAGGCACATC-GAGAAAA---ATCCATTACGCGA  46

seq1  CCTTGGAGAGTTTGATTCTATATA-ACCCAG-AATATAGTTGATTCCTGT  97
      |    |||||||||  |||| ||| |||||| |||||||| |||  ||||
seq2  C---TGAGAGTTTGGATCTA-ATATACCCAGAAATATAGTGGAT--CTGT  90

seq1  AA-GCATTTTGATATATTAATGAAATGATGCTAATTGATTAACAAAATCG  146
      || ||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  AAGGCATTTTGATATATT-ATG-AATGATGCTAATTGATTAACAAAATCG  138

seq1  TTGTCTCTGTTTTAATCACAG-CCAAACATACAGTACAGACATGGACTCC  195
       |||||||||||||||||||| ||||||||||||||||||||||||||| 
seq2  -TGTCTCTGTTTTAATCACAGCCCAAACATACAGTACAGACATGGACTCT  187

seq1  TGAACGGGACTCTGCTGCCCTCTGTAGG-TCATCACCATCACCTGCATGC  244
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAACGGGACTCTGCTGCCCTCTGTAGGATCATCACCATCACCTGCATGC  237

seq1  TCAGTGTCGA-CCAGGCACTAGTGTTACCCTTGGTGGATGAATGTCTTGC  293
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCGACCCAGGCACTAGTGTTACCCTTGGTGGATGAATGTCTTGC  287

seq1  TTGAG-CCTTTGCCAACTTTGGGCCGACTTTGGGCAGTATCTCCTCAGGG  342
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCCTTTGCCAACTTTGGGCCGACTTTGGGCAGTATCTCCTCAGGG  337

seq1  AACGTGTAGACAGAGGCCAATAGAGTGACCCCAGAAAATGTAGTTAGAAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTAGACAGAGGCCAATAGAGTGACCCCAGAAAATGTAGTTAGAAG  387

seq1  AGCCGACACGATTTTATTAAACATTTCAGATTCAACACAGCTATGTTTCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGACACGATTTTATTAAACATTTCAGATTCAACACAGCTATGTTTCT  437

seq1  TGTGCGAGCAGAATGTCCCAGAACAATTATCCGGATGCTGTCTCTTGCTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGAGCAGAATGTCCCAGAACAATTATCCGGATGCTGTCTCTTGCTA  487

seq1  AGTCTGTACTGTATGTTCCCTTGATTTTATCAGTGGAGAACATGGCGTGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTACTGTATGTTCCCTTGATTTTATCAGTGGAGAACATGGCGTGG  537

seq1  AGTTTAGAGAGAAATCCGGAGAAATCTTTTGGCTCAGTTAAGTCCAAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAGAGAAATCCGGAGAAATCTTTTGGCTCAGTTAAGTCCAAGAA  587

seq1  TATATTTCCCCAGTTTCTCAAGGAAAGAAACTGTGTGTTGTTGTCTAGAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCCCCAGTTTCTCAAGGAAAGAAACTGTGTGTTGTTGTCTAGAT  637

seq1  TATCAGCATCTTTATTGATATTGCTGCTGCTGCTTCTGTTATTTCAAAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCATCTTTATTGATATTGCTGCTGCTGCTTCTGTTATTTCAAAAA  687

seq1  TAGATTAGAAAGGAAACAACAGGACCTAGCCTGAATTTGTTTATTTTGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGAAAGGAAACAACAGGACCTAGCCTGAATTTGTTTATTTTGAA  737

seq1  ATCCAACGCACTCTTTCATCTCCAAATCAGAGCGTGGTTCTGTCTGTATA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACGCACTCTTTCATCTCCAAATCAGAGCGTGGTTCTGTCTGTATA  787

seq1  CTGATGTTATGTCCAAAACGTTCAATAAATTTCCTCTATCGGCTCCCTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTATGTCCAAAACGTTCAATAAATTTCCTCTATCGGCTCCCTCT  837

seq1  TCGTTGTAATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGTAATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  887

seq1  CTCTCTCTCTCTCTCTCTCTCTTTCTCTCGGAGCGTACTCAAAAACTAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTTTCTCTCGGAGCGTACTCAAAAACTAGT  937

seq1  ATTAAACAAATCAACATCTTACCTGGAGAATCTTTTTTTTTAATCGCTAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAATCAACATCTTACCTGGAGAATCTTTTTTTTTAATCGCTAT  987

seq1  TAAAGTTCCAGTTTCACTCAAAAGAAGAGTACTTATCAAATATATTTCTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCCAGTTTCACTCAAAAGAAGAGTACTTATCAAATATATTTCTT  1037

seq1  CTTAGTGAACATCCTTTGTGTGCAAGGCATTTCCCTCGCTTCCCTGGTCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGAACATCCTTTGTGTGCAAGGCATTTCCCTCGCTTCCCTGGTCA  1087

seq1  CTGCTGGAAGTGTGAGGTTGGAGCTAAGGGAAAAGGATATGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAAGTGTGAGGTTGGAGCTAAGGGAAAAGGATATGAATTC  1133