BAC Information

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BAC

Clone NameB6Ng01-348H13
Chromosome16 (Build37)
Map Location 60,974,070 - 61,106,085
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha6, LOC100043804, EG668168, LOC668170
Downstream geneLOC100043524, LOC668183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348H13.bB6Ng01-348H13.g
ACCGA129759GA129760
length1,1501,155
definitionB6Ng01-348H13.b B6Ng01-348H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,974,070 - 60,975,188)(61,104,934 - 61,106,085)
sequence
gaattcactcacacacacacacacacacacacacacacacacacacacac
tgttattacccaatactgaagtttttcaatttttggataattgtaaaatg
cacaaagtagcttgtcattcctccattggatttaatcatattctgttaaa
gaatctgatatctgtagaaccagcctgttatttcatagcatcttcacatt
taacaagaatctctgctcccttttctatatctagtaaagaagatatgcat
aggtactgcgaactttgggtgcatggactcaactttcaattacaatactt
ttccaacttatacaaatgaaagctccaaaaagggatgttttcctttgtgt
tctaaataactggagcatactaggatgtaataactgtaaagattttagga
gcagccccttaaaattatcctccttatcaacacttgtctattatgatttt
gttttttaccccctccaggttttcttgctgagttttggcattgaacaaac
tatctgatatcaagtgttagtttgtaatatttggaaatgatgcttgaaaa
agtataagaaaggcagtcagttataaacttttcaaaataaaaaaaatatt
actaatgttattttgtgaaaacacctttatcagtggaagtttaaaaacct
tataaatatttaataaaatttataatctatttcaaatataaaaggcttat
actacaaaagcctttcttttggatagataatatatttgtaaaaggcctct
gtttgtttcaagtactctatgtaagttctagatctaatataatattttta
atatttattgtgttttaatattgtagaaaatgcaattttttaagatatat
gaatttttcttgatcaaattaaaggctgtttaccataaaaataaatgaag
agttgagcagctgtattgcttcttattaagatattggataagcagtaaca
tgaaaattggctgttatctgagactgggaacaaatgaacattttaagtaa
caggatacatcattattacctggcaaaaagtatttattattggagatttt
agttggaaaataatggctaatattttataaacgctaagggcaggatgtag
gtttttatatttttggaataagagaactgaaaaacggattgtgcctttac

gaattccaagttcctctactttaaggattttctaggaagctggaacactg
gtggaggctcatctatgttaaaattcaatctttaaaggcacttataataa
aacaatactgaaagagagcatgtggatccataaaccagactaatgcgggg
atagggtatgagggttatgagaatgccagggttccaggaggttgagtttc
cttgaaactctttgtctcgtgagtgcttccaggcctctcagcctgtcaag
ctgacttcactggagtggatgtaggactcttggatatctccaatcacaga
gttgttatcctggcattcgttgagctccccgattactctggcattgctgg
gggagttttctagtctcagtttctgatttggccatttgatgccctgggtg
ggcagtgctggagtctttcgttccatctttgtcatctccttcggttttgc
tgtgttttttctttgttttctttctttgaaccaccagaggttcttgcctt
ttttcccctctttccttggtgagcagtatattgggatctttctaaaaacg
acttgtgatgaagaagaaatcagcttggaatcacttccacctgtgattga
atgcgtcagatgtttctgataaagatttcaaatggtgctggttgttgagt
gattcattacaattctgaggtgaacaacatttcagggcttaaaaattccc
tcgtggcaagtgagaaagagtaatggggggctgtctcctcttcccagagt
tgcatagcgagatgaggtgagtactccttgatgcccagcagtgaggtatg
ccagaccagatgtgggactctcaggggagttcctcaggaagactcttggg
cccagcaaggctccttctaaagccctactgtgatctagacttttcttttt
aaagccattataggcgatcacaacagaaaaacaatgggagaacagccaac
accacaaattaacatgtgtcaagtttctgttaaaaggtgctagcagtcat
tgaacatattcagaggcgctagaagaaatgcaaatgaccaagcttcaata
attacttataatgatatcatctctatatacttttgccacatattttcaac
aagatctgtccatggaaacaagagatctaaggctccattatctagattaa
tagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_60974070_60975188
seq2: B6Ng01-348H13.b_43_1175

seq1  GAATTCACTCACACACACACACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACACACACACACACACACACACACACACACACACACACAC  50

seq1  TGTTATTACCCAATACTGAAGTTTTTCAATTTTTGGATAATTGTAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTACCCAATACTGAAGTTTTTCAATTTTTGGATAATTGTAAAATG  100

seq1  CACAAAGTAGCTTGTCATTCCTCCATTGGATTTAATCATATTCTGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTAGCTTGTCATTCCTCCATTGGATTTAATCATATTCTGTTAAA  150

seq1  GAATCTGATATCTGTAGAACCAGCCTGTTATTTCATAGCATCTTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGATATCTGTAGAACCAGCCTGTTATTTCATAGCATCTTCACATT  200

seq1  TAACAAGAATCTCTGCTCCCTTTTCTATATCTAGTAAAGAAGATATGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAATCTCTGCTCCCTTTTCTATATCTAGTAAAGAAGATATGCAT  250

seq1  AGGTACTGCGAACTTTGGGTGCATGGACTCAACTTTCAATTACAATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGCGAACTTTGGGTGCATGGACTCAACTTTCAATTACAATACTT  300

seq1  TTCCAACTTATACAAATGAAAGCTCCAAAAAGGGATGTTTTCCTTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTTATACAAATGAAAGCTCCAAAAAGGGATGTTTTCCTTTGTGT  350

seq1  TCTAAATAACTGGAGCATACTAGGATGTAATAACTGTAAAGATTTTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAACTGGAGCATACTAGGATGTAATAACTGTAAAGATTTTAGGA  400

seq1  GCAGCCCCTTAAAATTATCCTCCTTATCAACACTTGTCTATTATGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCCTTAAAATTATCCTCCTTATCAACACTTGTCTATTATGATTTT  450

seq1  GTTTTTTACCCCCTCCAGGTTTTCTTGCTGAGTTTTGGCATTGAACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTACCCCCTCCAGGTTTTCTTGCTGAGTTTTGGCATTGAACAAAC  500

seq1  TATCTGATATCAAGTGTTAGTTTGTAATATTTGGAAATGATGCTTGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATATCAAGTGTTAGTTTGTAATATTTGGAAATGATGCTTGAAAA  550

seq1  AGTATAAGAAAGGCAGTCAGTTATAAACTTTTCAAAATAAAAAAAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAGAAAGGCAGTCAGTTATAAACTTTTCAAAATAAAAAAAATATT  600

seq1  ACTAATGTTATTTTGTGAAAACACCTTTATCAGTGGAAGTTTAAAAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGTTATTTTGTGAAAACACCTTTATCAGTGGAAGTTTAAAAACCT  650

seq1  TATAAATATTTAATAAAATTTATAATCTATTTCAAATATAAAAGGCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATTTAATAAAATTTATAATCTATTTCAAATATAAAAGGCTTAT  700

seq1  ACTAC-AAAGCCTTTCTTTTGGATAGATAATATATTTGTAAAAGGCCTCT  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAAGCCTTTCTTTTGGATAGATAATATATTTGTAAAAGGCCTCT  750

seq1  GTTTGTTTCAAGTACTCTATGTAAGTTCTAGATCTAATATAATATTTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTCAAGTACTCTATGTAAGTTCTAGATCTAATATAATATTTTTA  800

seq1  ATATTTATTGTG-TTTAATATTGTAGAAAATGCAA-TTTTTAAGATATAT  847
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  ATATTTATTGTGTTTTAATATTGTAGAAAATGCAATTTTTTAAGATATAT  850

seq1  GAA-TTTTCTTGATCAAATTAAAGGCTGTTTACCATAAAAAT-AATGAAG  895
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATTTTTCTTGATCAAATTAAAGGCTGTTTACCATAAAAATAAATGAAG  900

seq1  AGTTGAGCAGCTGTATTGCTTCTAATTAAGATATTGGATTAGCAGT-ACA  944
      ||||||||||||||||||||||| ||||||||||||||| |||||| |||
seq2  AGTTGAGCAGCTGTATTGCTTCTTATTAAGATATTGGATAAGCAGTAACA  950

seq1  TGAAAATT-GCTGTTATCTGAGACTGGGAACAAATGAACATTTTAAAGTA  993
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TGAAAATTGGCTGTTATCTGAGACTGGGAACAAATGAACATTTT-AAGTA  999

seq1  ACA-GATACATCATATTAACCTGCAAAAAAGTATTAATTATT-GAGATTT  1041
      ||| ||||||||||  | |||||  |||||||||| |||||| |||||||
seq2  ACAGGATACATCATTATTACCTGGCAAAAAGTATTTATTATTGGAGATTT  1049

seq1  TAGTT-GAAAATAAT-GCTTATATTTTAT-AACGCTAAGGGCAGATTGTA  1088
      ||||| ||||||||| ||| ||||||||| ||||||||||||||  ||||
seq2  TAGTTGGAAAATAATGGCTAATATTTTATAAACGCTAAGGGCAGGATGTA  1099

seq1  -GTTTTTATATTTT--GATAAGGAGAACTGAAAA  1119
       |||||||||||||  ||  | ||||||||||||
seq2  GGTTTTTATATTTTTGGAATAAGAGAACTGAAAA  1133

seq1: chr16_61104934_61106085
seq2: B6Ng01-348H13.g_63_1217 (reverse)

seq1  TCCTATTACTCTTAGATTATGGAG-CTTAGATCTCTGTTTTCCAT-GACA  48
      |||||||| || ||||| |||||| |||||||||||  ||||||| ||||
seq2  TCCTATTAATC-TAGATAATGGAGCCTTAGATCTCTTGTTTCCATGGACA  49

seq1  GATCTTGTTGAAAATATGTGCAAAAAGTATATAGAGATGATTATCAATAT  98
      ||||||||||||||||||||  |||||||||||||||||| ||||| |||
seq2  GATCTTGTTGAAAATATGTGGCAAAAGTATATAGAGATGA-TATCATTAT  98

seq1  -AGTAA-TATTG-AGCTTGGTCATTTGCATTTC-TCTAGCG-CTCTGGAT  143
       ||||| ||||| |||||||||||||||||||| ||||||| |||| || 
seq2  AAGTAATTATTGAAGCTTGGTCATTTGCATTTCTTCTAGCGCCTCT-GAA  147

seq1  TATG-TCAATGACTGCTAGCACCTTTTTAACAGAAACTTGACACATGTTA  192
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATGTTCAATGACTGCTAGCACC-TTTTAACAGAAACTTGACACATGTTA  196

seq1  ATTTGTGGTGTTGGCTGTTCTCCCATTGTTTTTTCTGTTGTGATCGCCTA  242
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTTGTGGTGTTGGCTGTTCTCCCATTG-TTTTTCTGTTGTGATCGCCTA  245

seq1  TAATGGCTTTAAAAAGAAAAGTCTAGATCACAGTAGGGCTTTAGAAGGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCTTTAAAAAGAAAAGTCTAGATCACAGTAGGGCTTTAGAAGGAG  295

seq1  CCTTGCTGGGCCCAAGAGTCTTCCTGAGGAACTCCCCTGAGAGTCCCACA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGGCCCAAGAGTCTTCCTGAGGAACTCCCCTGAGAGTCCCACA  345

seq1  TCTGGTCTGGCATACCTCACTGCTGGGCATCAAGGAGTACTCACCTCATC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTCTGGCATACCTCACTGCTGGGCATCAAGGAGTACTCACCTCATC  395

seq1  TCGCTATGCAACTCTGGGAAGAGGAGACAGCCCCCCATTACTCTTTCTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTATGCAACTCTGGGAAGAGGAGACAGCCCCCCATTACTCTTTCTCA  445

seq1  CTTGCCACGAGGGAATTTTTAAGCCCTGAAATGTTGTTCACCTCAGAATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCACGAGGGAATTTTTAAGCCCTGAAATGTTGTTCACCTCAGAATT  495

seq1  GTAATGAATCACTCAACAACCAGCACCATTTGAAATCTTTATCAGAAACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAATCACTCAACAACCAGCACCATTTGAAATCTTTATCAGAAACA  545

seq1  TCTGACGCATTCAATCACAGGTGGAAGTGATTCCAAGCTGATTTCTTCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACGCATTCAATCACAGGTGGAAGTGATTCCAAGCTGATTTCTTCTT  595

seq1  CATCACAAGTCGTTTTTAGAAAGATCCCAATATACTGCTCACCAAGGAAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAAGTCGTTTTTAGAAAGATCCCAATATACTGCTCACCAAGGAAA  645

seq1  GAGGGGAAAAAAGGCAAGAACCTCTGGTGGTTCAAAGAAAGAAAACAAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAAAAAGGCAAGAACCTCTGGTGGTTCAAAGAAAGAAAACAAAG  695

seq1  AAAAAACACAGCAAAACCGAAGGAGATGACAAAGATGGAACGAAAGACTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACAGCAAAACCGAAGGAGATGACAAAGATGGAACGAAAGACTC  745

seq1  CAGCACTGCCCACCCAGGGCATCAAATGGCCAAATCAGAAACTGAGACTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTGCCCACCCAGGGCATCAAATGGCCAAATCAGAAACTGAGACTA  795

seq1  GAAAACTCCCCCAGCAATGCCAGAGTAATCGGGGAGCTCAACGAATGCCA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCCCCAGCAATGCCAGAGTAATCGGGGAGCTCAACGAATGCCA  845

seq1  GGATAACAACTCTGTGATTGGAGATATCCAAGAGTCCTACATCCACTCCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACAACTCTGTGATTGGAGATATCCAAGAGTCCTACATCCACTCCA  895

seq1  GTGAAGTCAGCTTGACAGGCTGAGAGGCCTGGAAGCACTCACGAGACAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTCAGCTTGACAGGCTGAGAGGCCTGGAAGCACTCACGAGACAAA  945

seq1  GAGTTTCAAGGAAACTCAACCTCCTGGAACCCTGGCATTCTCATAACCCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCAAGGAAACTCAACCTCCTGGAACCCTGGCATTCTCATAACCCT  995

seq1  CATACCCTATCCCCGCATTAGTCTGGTTTATGGATCCACATGCTCTCTTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCTATCCCCGCATTAGTCTGGTTTATGGATCCACATGCTCTCTTT  1045

seq1  CAGTATTGTTTTATTATAAGTGCCTTTAAAGATTGAATTTTAACATAGAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGTTTTATTATAAGTGCCTTTAAAGATTGAATTTTAACATAGAT  1095

seq1  GAGCCTCCACCAGTGTTCCAGCTTCCTAGAAAATCCTTAAAGTAGAGGAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCCACCAGTGTTCCAGCTTCCTAGAAAATCCTTAAAGTAGAGGAA  1145

seq1  CTTGGAATTC  1152
      ||||||||||
seq2  CTTGGAATTC  1155