BAC Information

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BAC

Clone NameB6Ng01-348J12
Chromosome16 (Build37)
Map Location 92,625,870 - 92,779,252
singlet/doubletdoublet
Overlap geneRunx1
Upstream geneGart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6
Downstream geneEG666023, LOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348J12.bB6Ng01-348J12.g
ACCGA129844GA129845
length1,0081,078
definitionB6Ng01-348J12.b B6Ng01-348J12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,625,870 - 92,626,889)(92,778,178 - 92,779,252)
sequence
gaattcttttaaactctaacacagatctcaaaagacacatacccatacag
cgtagagactctcggtaataagcaggcctctgatgatctaaagatccatg
gcttcatttattgactagggaaagtaaatgacatttcaaatacaaccttc
acacttgaatagatgaggtcaccctgagaaagatgatactgaacggagcc
cagcagtgggagagctccctccagagaacgcctttgatttacaaggtcaa
ggcagcctttcatacagaagcgataggttttcagtgacttggacgcagat
ggaagaaaaaaagctatgtacaggttgagattgtgggacataccgacaca
tttgatcacacagtgagtgggactggccagtggaggaaggaggtgccaga
gacccagaggccgaagtgatctgcagacagacacccaatcaactcagttt
tgcacattgacatcttatacgcatggactaaacacttctgcctttcccag
gctggtctaaaccagtagggaactctcttctagaggacttttagtaatgt
caggaaacaggactactcttgattagagtcgggagagccagagacattga
gtgggtagagaccaggggtgctgtctggtagctgttaagtgcataagaag
ttcccgtaaaagaatggttcagctcccacagtcaagggaaactaaaatga
caagggaagactgacccagggaacgtcacaccgatagggtagttcagcca
acttcacatggaagcagagcatgtgacttctagaggctgctctgattcga
gagatgtaatctagcacggtggcctgggtgaagacacatgaactgagggc
tgaggtgggggcaaccatggctaggcagcgcctaagagaacctcggctcc
acatcgtgttgcagaactgctttctcacagtctcagtctgacacaccaga
cttgacactgctgaatctagccctgggagaccagagtatattgcaataaa
gcttgccc
gaattccagtcaagtcatgaccagtagttcctggagcacactgggaaact
cctgccagagcagaagaaggggccagcaaaaatcatctcatcccatctca
acggaatccaaaccctggtctgtgacttcagggccacccctgaatctagt
ggtgctccttggggctctgcctcatggaccaagcccatccacagcacagc
accttccaggccccgccaagaaaccttgttcatttgttacttgtttgttt
gaccttttctttgtgatgggtttaacggaattcccttctatgccgaaaat
cttaagcagctctctgttcattctttgttactgcctttgttaagataaac
tcagtctccctcctgtcctccttctccccctccctccctttcttcttcct
ttttggttttatgtgaatttttgttaatgatgtcagacttcaaaggaagt
gttccagccatttctatcccaacagacttgggcctggaattcggtctctg
tcttggtgaaagcactatgttgctaacacgtgtctcacctccggttgact
ctggcctctgtctcccctctgtcacacagcaaagcctcttcactttctct
cgccctgaattactgtcaggaatcagcagctgtccctgtgccagaccctg
agccccagtgacttcattcttccctgctgtcccaacactaatctccctgc
tccctgcctgtgtcagcaccttgagcccctggcatgcctggctttcctca
gccattgcccaaatgattctcttctcgctctgtctgtccccgaaggcccg
gccacaaggtggatgaagccagagctaattgaatctttgggtgatgattt
cacagaagtaagcctgactgtctgacccaaaaaaccacacagtggggagt
ttagaagccagcagtcaaaacagccttctgggtttcagccattgattgaa
gttcaaaggatcacagatgggaagtcagtaatgacgaggggtgggtccgg
gaacacacttacctgggccatgaagccttcgtgggtgaggcttccaggcc
ttgatcatgcctagttgcactgggactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92625870_92626889
seq2: B6Ng01-348J12.b_46_1053

seq1  GAATTCTTTTAAACTCTAACACAGATCTCAAAAGACACATACCCATACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAACTCTAACACAGATCTCAAAAGACACATACCCATACAG  50

seq1  CGTAGAGACTCTCGGTAATAAGCAGGCCTCTGATGATCTAAAGATCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAGACTCTCGGTAATAAGCAGGCCTCTGATGATCTAAAGATCCATG  100

seq1  GCTTCATTTATTGACTAGGGAAAGTAAATGACATTTCAAATACAACCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATTTATTGACTAGGGAAAGTAAATGACATTTCAAATACAACCTTC  150

seq1  ACACTTGAATAGATGAGGTCACCCTGAGAAAGATGATACTGAACGGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAATAGATGAGGTCACCCTGAGAAAGATGATACTGAACGGAGCC  200

seq1  CAGCAGTGGGAGAGCTCCCTCCAGAGAACGCCTTTGATTTACAAGGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGGGAGAGCTCCCTCCAGAGAACGCCTTTGATTTACAAGGTCAA  250

seq1  GGCAGCCTTTCATACAGAAGCGATAGGTTTTCAGTGACTTGGACGCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCTTTCATACAGAAGCGATAGGTTTTCAGTGACTTGGACGCAGAT  300

seq1  GGAAGAAAAAAAGCTATGTACAGGTTGAGATTGTGGGACATACCGACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAAAAAGCTATGTACAGGTTGAGATTGTGGGACATACCGACACA  350

seq1  TTTGATCACACAGTGAGTGGGACTGGCCAGTGGAGGAAGGAGGTGCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCACACAGTGAGTGGGACTGGCCAGTGGAGGAAGGAGGTGCCAGA  400

seq1  GACCCAGAGGCCGAAGTGATCTGCAGACAGACACCCAATCAACTCAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGAGGCCGAAGTGATCTGCAGACAGACACCCAATCAACTCAGTTT  450

seq1  TGCACATTGACATCTTATACGCATGGACTAAACACTTCTGCCTTTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTGACATCTTATACGCATGGACTAAACACTTCTGCCTTTCCCAG  500

seq1  GCTGGTCTAAACCAGTAGGGAACTCTCTTCTAGAGGACTTTTAGTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTAAACCAGTAGGGAACTCTCTTCTAGAGGACTTTTAGTAATGT  550

seq1  CAGGAAACAGGACTACTCTTGATTAGAGTCGGGAGAGCCAGAGACATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACAGGACTACTCTTGATTAGAGTCGGGAGAGCCAGAGACATTGA  600

seq1  GTGGGTAGAGACCAGGGGTGCTGTCTGGTAGCTGTTAAGTGCATAAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGAGACCAGGGGTGCTGTCTGGTAGCTGTTAAGTGCATAAGAAG  650

seq1  TTCCCGTAAAAGAATGGTTCAGCTCCCACAGTCAAGGGAAACTAAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTAAAAGAATGGTTCAGCTCCCACAGTCAAGGGAAACTAAAATGA  700

seq1  CAAGGGAAGACTGACCCAGGGAACGTCACACCGATAGGGTAGTTCAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAGACTGACCCAGGGAACGTCACACCGATAGGGTAGTTCAGCCA  750

seq1  ACTTCAACATGGAAGCAGAGCATGTGACTTCTAGAGGCTGCTCTGATTTC  800
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTC-ACATGGAAGCAGAGCATGTGACTTCTAGAGGCTGCTCTGA-TTC  798

seq1  GAGAGATGTAATCTAGCACGGTGGCCTGGGTGGAAGACACATGAACTGAG  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GAGAGATGTAATCTAGCACGGTGGCCTGGGT-GAAGACACATGAACTGA-  846

seq1  GGGCTGAGGTGGGGGCAACCATGGCTAGGCAGCGCCTAAGGAGAACCTCG  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGGCTGAGGTGGGGGCAACCATGGCTAGGCAGCGCCTAA-GAGAACCTCG  895

seq1  TCTCCACATCGGTGTTTGCAGAAACTGCTTTCTCACAGTCTCAGTCTGAC  950
       ||||||||| ||| |||||| ||||||||||||||||||||||||||||
seq2  GCTCCACATC-GTG-TTGCAG-AACTGCTTTCTCACAGTCTCAGTCTGAC  942

seq1  AC-GCAGACTTGGCACTGGCTGAATCCAGCCCCGGGGGAGCCACAGGTGT  999
      ||  |||||||| |||| |||||||| ||||| ||| || |||   | ||
seq2  ACACCAGACTTGACACT-GCTGAATCTAGCCCTGGGAGA-CCA---GAGT  987

seq1  AAATGGCCAATAAGCTTGCCC  1020
      | || || |  ||||||||||
seq2  ATATTGCAATAAAGCTTGCCC  1008

seq1: chr16_92778178_92779252
seq2: B6Ng01-348J12.g_67_1144 (reverse)

seq1  CAGTCCCAGTGCAACTA-GCATGATTTAAAGGCCTGGGAAGCCTCACCCA  49
      ||||||||||||||||| ||||||  | ||||||| ||||||||||||||
seq2  CAGTCCCAGTGCAACTAGGCATGA--TCAAGGCCT-GGAAGCCTCACCCA  47

seq1  CG-AGGCTTCAT-GCCCAGGTAAGTGTGTTTCCCGGGCCCA-CCCTCGTC  96
      || ||||||||| ||||||||||||||| ||||||| |||| ||||||||
seq2  CGAAGGCTTCATGGCCCAGGTAAGTGTG-TTCCCGGACCCACCCCTCGTC  96

seq1  ATTACTGACTT-CCATCTGTGTTCCTTTGAACTTCAATCAATGGCTG-AA  144
      ||||||||||| ||||||||| ||||||||||||||||||||||||| ||
seq2  ATTACTGACTTCCCATCTGTGATCCTTTGAACTTCAATCAATGGCTGAAA  146

seq1  CCCAGAAGGCTGTTTTGACTGCTGGCTTCTAAACTCCCCACTGTGTGGTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGGCTGTTTTGACTGCTGGCTTCTAAACTCCCCACTGTGTGGTT  196

seq1  TTTTGGGTCAGACAGTCAGGCTTACTTCTGTG-AATCATCACCCAAAGAT  243
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTGGGTCAGACAGTCAGGCTTACTTCTGTGAAATCATCACCCAAAGAT  246

seq1  TCAATTAGCTCTGGCTTCATCCACCTTGTGGCCGGGCCTTCGGGGACAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGCTCTGGCTTCATCCACCTTGTGGCCGGGCCTTCGGGGACAGA  296

seq1  CAGAGCGAGAAGAGAATCATTTGGGCAATGGCTGAGGAAAGCCAGGCATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCGAGAAGAGAATCATTTGGGCAATGGCTGAGGAAAGCCAGGCATG  346

seq1  CCAGGGGCTCAAGGTGCTGACACAGGCAGGGAGCAGGGAGATTAGTGTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGCTCAAGGTGCTGACACAGGCAGGGAGCAGGGAGATTAGTGTTG  396

seq1  GGACAGCAGGGAAGAATGAAGTCACTGGGGCTCAGGGTCTGGCACAGGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCAGGGAAGAATGAAGTCACTGGGGCTCAGGGTCTGGCACAGGGA  446

seq1  CAGCTGCTGATTCCTGACAGTAATTCAGGGCGAGAGAAAGTGAAGAGGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTGATTCCTGACAGTAATTCAGGGCGAGAGAAAGTGAAGAGGCT  496

seq1  TTGCTGTGTGACAGAGGGGAGACAGAGGCCAGAGTCAACCGGAGGTGAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGTGACAGAGGGGAGACAGAGGCCAGAGTCAACCGGAGGTGAGA  546

seq1  CACGTGTTAGCAACATAGTGCTTTCACCAAGACAGAGACCGAATTCCAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTTAGCAACATAGTGCTTTCACCAAGACAGAGACCGAATTCCAGG  596

seq1  CCCAAGTCTGTTGGGATAGAAATGGCTGGAACACTTCCTTTGAAGTCTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCTGTTGGGATAGAAATGGCTGGAACACTTCCTTTGAAGTCTGA  646

seq1  CATCATTAACAAAAATTCACATAAAACCAAAAAGGAAGAAGAAAGGGAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAACAAAAATTCACATAAAACCAAAAAGGAAGAAGAAAGGGAGG  696

seq1  GAGGGGGAGAAGGAGGACAGGAGGGAGACTGAGTTTATCTTAACAAAGGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGAGAAGGAGGACAGGAGGGAGACTGAGTTTATCTTAACAAAGGC  746

seq1  AGTAACAAAGAATGAACAGAGAGCTGCTTAAGATTTTCGGCATAGAAGGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAAAGAATGAACAGAGAGCTGCTTAAGATTTTCGGCATAGAAGGG  796

seq1  AATTCCGTTAAACCCATCACAAAGAAAAGGTCAAACAAACAAGTAACAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCGTTAAACCCATCACAAAGAAAAGGTCAAACAAACAAGTAACAAA  846

seq1  TGAACAAGGTTTCTTGGCGGGGCCTGGAAGGTGCTGTGCTGTGGATGGGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGGTTTCTTGGCGGGGCCTGGAAGGTGCTGTGCTGTGGATGGGC  896

seq1  TTGGTCCATGAGGCAGAGCCCCAAGGAGCACCACTAGATTCAGGGGTGGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCATGAGGCAGAGCCCCAAGGAGCACCACTAGATTCAGGGGTGGC  946

seq1  CCTGAAGTCACAGACCAGGGTTTGGATTCCGTTGAGATGGGATGAGATGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGTCACAGACCAGGGTTTGGATTCCGTTGAGATGGGATGAGATGA  996

seq1  TTTTTGCTGGCCCCTTCTTCTGCTCTGGCAGGAGTTTCCCAGTGTGCTCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGGCCCCTTCTTCTGCTCTGGCAGGAGTTTCCCAGTGTGCTCC  1046

seq1  AGGAACTACTGGTCATGACTTGACTGGAATTC  1075
      ||||||||||||||||||||||||||||||||
seq2  AGGAACTACTGGTCATGACTTGACTGGAATTC  1078