BAC Information

Click to search

BAC

Clone NameB6Ng01-348L12
Chromosome16 (Build37)
Map Location 37,426,620 - 37,427,766
singlet/doubletsinglet
Overlap genenone
Upstream geneStfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348L12.bB6Ng01-348L12.g
ACCGA129930GA129931
length1,1461,144
definitionB6Ng01-348L12.b B6Ng01-348L12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaatacaaaagaaagctaaattctaaaatatacttccatttt
ccatgtctatagcagaaggaataaaaatctatttgcctatagatttctaa
tttacaagttgggaagttttataattttgctgattaggccttgaaatcta
agggtccatggcagttataataaacatctcccccttagggactagaatca
agaagtacattgccccaatttttcaaacatagtaggaaaagatggagaaa
ggagccttctttgtggtccacaaaaatattgaaacatcattattggtaca
taagagttggtacactagagctcaaacatatacaaatgagaatactagat
tatatttcatctacattattgtatttccatagcctatataaattgccact
gaaatcttatctggtattaaacagcaattcaaccttgacagtgaagtgaa
gcttgaagaactaaaaagagttatttttaattctatggcaacctataaac
cccatagttctataccgtgggctgacatttatatgcaaactagccaatta
tctatatttttctttgttttccttatagtagaatggtaaaatcactttct
tgtttgtcttcttctaagaagaatgctagtgaggaaaaagtaatacacac
acacacacacacacacacacatacacccatttacacatacatatacacat
atatatcctaaaataattttaggattttaatctatatttaaaatatttat
tatatatttaatgtttgtaatatatctaattattttggagtccagagaag
caattttatttatcggttattatacttgatcatcacatgacatgaaaact
tacatgccatcttaaatgttatgtgtttttttttaattaggtattttctt
catttacatttccaatgctatcccaaaagtcccccataccctccccccaa
ctttcctacccacccactaccatttcttgggccctgggcgttccctgtac
taaggggctgagagatatctcagtggtttaagagccactgagtgctctct
gaggtctggagttcaaatcccagcacacatggtggctcacacatcggtaa
tggaagatttgatgccctcttctgggtgcatctgaagacgctacag
gaattccacataaaaccagagacagtgaaatttatagaggagaaagtgcg
gaaaagcctcgaagatatgggcacaggggaaaatttcctgaatagaacag
caaggcttgtgctgtaagatcaagaatcgacaaatgggacctcataaaat
tgcaaagcttctgtaaggcaaaagaaaccttcaataagacaaaaaggcca
ccaaaagattgggaaaggatctttacctatcctaaatcagataggggact
aatatccaatatatatataaagaactcaagaaagtggactccagaaaatc
aaataaccccagtaaaaaatggggctcagagctaaacaaagaattctcac
ctgaggaataccgaatggctgagaagcacctgaaaaaatgttcaacatcc
ttaatcatcagggaaatgcaaatcaaagcaaccctgagattccacctcac
accagtcaaaatcgctaagatcaaagcctcaactgacagcagatgctggc
aaggatgtggagaaagaggaacactcttccattgttgttgggattgcaag
cttgtacaaccactctggaaatcagtccggcggttcctcagaaattggac
atagtactaccgaaggatcccgaaatacctctcctgggcacatatccata
agatgttccaactggtaagaaggacacatgctccactatgttcatagcag
ccttatttataaaagccagaagctggagagaacccagatgcccctcaaca
gaggaatggatacagaaaatgtggtacatttacacagtggagtactactc
agctattaaaaggaatgaatttatgaaattcctaggtaaatggatggacc
tggaggatatcatcctgagtgaggtaacccaatcacaaaagaactcacat
gatatgtactcactgttaagtgggatattagcccagaaacttagaatact
caagatgcaaggtacaatctgtaaaacacatgaaactcagagacgagacc
aaaatgtggacactttgcctttctagactgggaacaaaacactcatgaga
gttacagagacaaagttgaagctgagacgaaagaatggaccatctaggac
ctgccatacccgagattcaattcccataattcagtccttcgaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37426620_37427766
seq2: B6Ng01-348L12.b_49_1194 (reverse)

seq1  CTGTAGCTGTCTTCAGATGCA-CCAGAAGAGGGCATCAAATCT--CATTA  47
      ||||||| ||||||||||||| |||||||||||||||||||||  |||||
seq2  CTGTAGC-GTCTTCAGATGCACCCAGAAGAGGGCATCAAATCTTCCATTA  49

seq1  CGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCT  97
      | ||||  ||||||||||||||||  |||||||||||||||||  |||| 
seq2  CCGATG--TGTGAGCCACCATGTG--TGCTGGGATTTGAACTCCAGACC-  94

seq1  TCAGAAGAGCACTCAGT-GCTCTT-AACCACTGAGATATCTCTCAGCCCC  145
      |||| |||||||||||| |||||| |||||||||||||||||||||||||
seq2  TCAG-AGAGCACTCAGTGGCTCTTAAACCACTGAGATATCTCTCAGCCCC  143

seq1  TTAGTACAGGGGAACG-CCAGGG-CCAAGAAATGGTAGTGGGTGGGTAGG  193
      |||||||| ||||||| |||||| ||||||||||||||||||||||||||
seq2  TTAGTACA-GGGAACGCCCAGGGCCCAAGAAATGGTAGTGGGTGGGTAGG  192

seq1  AAAGTTGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTA  242

seq1  AATGAAGAAAATACCTAATTAAAAAAAAACACATAACATTTAAGATGGCA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAAATACCTAATTAAAAAAAAACACATAACATTTAAGATGGCA  292

seq1  TGTAAGTTTTCATGTCATGTGATGATCAAGTATAATAACCGATAAATAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTTTCATGTCATGTGATGATCAAGTATAATAACCGATAAATAAA  342

seq1  ATTGCTTCTCTGGACTCCAAAATAATTAGATATATTACAAACATTAAATA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTCTGGACTCCAAAATAATTAGATATATTACAAACATTAAATA  392

seq1  TATAATAAATATTTTAAATATAGATTAAAATCCTAAAATTATTTTAGGAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATATTTTAAATATAGATTAAAATCCTAAAATTATTTTAGGAT  442

seq1  ATATATGTGTATATGTATGTGTAAATGGGTGTATGTGTGTGTGTGTGTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTGTATATGTATGTGTAAATGGGTGTATGTGTGTGTGTGTGTGT  492

seq1  GTGTGTGTGTATTACTTTTTCCTCACTAGCATTCTTCTTAGAAGAAGACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATTACTTTTTCCTCACTAGCATTCTTCTTAGAAGAAGACA  542

seq1  AACAAGAAAGTGATTTTACCATTCTACTATAAGGAAAACAAAGAAAAATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAGTGATTTTACCATTCTACTATAAGGAAAACAAAGAAAAATA  592

seq1  TAGATAATTGGCTAGTTTGCATATAAATGTCAGCCCACGGTATAGAACTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATTGGCTAGTTTGCATATAAATGTCAGCCCACGGTATAGAACTA  642

seq1  TGGGGTTTATAGGTTGCCATAGAATTAAAAATAACTCTTTTTAGTTCTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTATAGGTTGCCATAGAATTAAAAATAACTCTTTTTAGTTCTTC  692

seq1  AAGCTTCACTTCACTGTCAAGGTTGAATTGCTGTTTAATACCAGATAAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCACTTCACTGTCAAGGTTGAATTGCTGTTTAATACCAGATAAGA  742

seq1  TTTCAGTGGCAATTTATATAGGCTATGGAAATACAATAATGTAGATGAAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGGCAATTTATATAGGCTATGGAAATACAATAATGTAGATGAAA  792

seq1  TATAATCTAGTATTCTCATTTGTATATGTTTGAGCTCTAGTGTACCAACT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTAGTATTCTCATTTGTATATGTTTGAGCTCTAGTGTACCAACT  842

seq1  CTTATGTACCAATAATGATGTTTCAATATTTTTGTGGACCACAAAGAAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTACCAATAATGATGTTTCAATATTTTTGTGGACCACAAAGAAGG  892

seq1  CTCCTTTCTCCATCTTTTCCTACTATGTTTGAAAAATTGGGGCAATGTAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCTCCATCTTTTCCTACTATGTTTGAAAAATTGGGGCAATGTAC  942

seq1  TTCTTGATTCTAGTCCCTAAGGGGGAGATGTTTATTATAACTGCCATGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTCTAGTCCCTAAGGGGGAGATGTTTATTATAACTGCCATGGA  992

seq1  CCCTTAGATTTCAAGGCCTAATCAGCAAAATTATAAAACTTCCCAACTTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGATTTCAAGGCCTAATCAGCAAAATTATAAAACTTCCCAACTTG  1042

seq1  TAAATTAGAAATCTATAGGCAAATAGATTTTTATTCCTTCTGCTATAGAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAGAAATCTATAGGCAAATAGATTTTTATTCCTTCTGCTATAGAC  1092

seq1  ATGGAAAATGGAAGTATATTTTAGAATTTAGCTTTCTTTTGTATTTGAGA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATGGAAGTATATTTTAGAATTTAGCTTTCTTTTGTATTTGAGA  1142

seq1  ATTC  1147
      ||||
seq2  ATTC  1146