BAC Information

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BAC

Clone NameB6Ng01-349B06
Chromosome16 (Build37)
Map Location 31,981,813 - 32,167,039
singlet/doubletdoublet
Overlap geneSenp5, Pak2, Pigx, 1500031L02Rik, Lrrc33
Upstream geneAI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2
Downstream geneBex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln, LOC638791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349B06.bB6Ng01-349B06.g
ACCGA130170GA130171
length1,044367
definitionB6Ng01-349B06.b B6Ng01-349B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,981,813 - 31,982,862)(32,166,667 - 32,167,039)
sequence
gaattcaattcccagcaaccacataatggcttacaaccatctatagctac
agtgtactcatgtacataaaataaaataaataaatcttttaaaatttttt
tatgtgcataagtgttttgcctacattatacaaatgtgtatccagtgcca
acaagtcaggggagggaatcagatctcctgaaactgaagttccagacagt
tgtgagccacattgtgggcacaagaaattaaatccaggtcccttgcaaaa
gcaaccagtgcatttaaccaatgagccatctctctagccccaagactaag
ttttatttaaaaatctataataatccttgttaaacatatctttttttttt
tttttttttttttttttggtttttcgagacagggtttctctgtgtagccc
tggctgtcctggaactcactctgtagaccaggctggccttgaactcagaa
atccacctgcctctgcctcccgagtgctgggattaaaggcgtgcgccacc
accgcccggctctcttttttttttctttttttaaacatatcttaaaaaaa
aaaagtatgctctgtaaaaataaacacaactggagctggtgagatggctc
agtagttaagaacactgactgctcttccagaagtcctgagttcaattccc
aggaaccacatggtggctcacaaccatctgatgccctcttcaggcaagtg
gcacagcactcatacattaaataaaatttttaaaaaacacaaacaagtaa
ggaagagggctggagagatggtgcagcggttaagagcattgactactctt
ccagaggccctgagttcaactcccagcaaccacatggtggctcaaaccat
ctgtaatgggatctgatgcccttttctggtggtgcctgaagagagcaatg
gtattcctacattaaattaataaccacaaatctttaaaaaaaaaaaagga
aggaagaaaatgggcgttgtgggtttttttaaatcaaaaatggatttttt
ttcaggtctccccacctccaccccaaagacagggtttctctgtg
ccaaacagccaaggctatgtagaaagagcctgtctcaaataaataaataa
ataaataaataaataaatgttttaaatatgaatacaagccctttcttgga
aaagaagcttggtgctagagataagagttagccacacactggtagacaca
aaggaaaaagtttgagtcagaaaccttagtgtgacacaattttctctaca
cttgttttcttcttcaatggtgccatcattgttacctttacaagtgaata
aatgtgtgtgtgtgtgtgtttacatatatatgtaaaacagttaaagtgga
agaggccatgaatttggaagagaacagggtgggatatataggaatgttag
agggagaagggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31981813_31982862
seq2: B6Ng01-349B06.b_46_1089

seq1  GAATTCAATTCCCAGCAACCACATAATGGCTTACAACCATCTATAGCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACATAATGGCTTACAACCATCTATAGCTAC  50

seq1  AGTGTACTCATGTACATAAAATAAAATAAATAAATCTTTTAAAATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTCATGTACATAAAATAAAATAAATAAATCTTTTAAAATTTTTT  100

seq1  TATGTGCATAAGTGTTTTGCCTACATTATACAAATGTGTATCCAGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCATAAGTGTTTTGCCTACATTATACAAATGTGTATCCAGTGCCA  150

seq1  ACAAGTCAGGGGAGGGAATCAGATCTCCTGAAACTGAAGTTCCAGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAGGGGAGGGAATCAGATCTCCTGAAACTGAAGTTCCAGACAGT  200

seq1  TGTGAGCCACATTGTGGGCACAAGAAATTAAATCCAGGTCCCTTGCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACATTGTGGGCACAAGAAATTAAATCCAGGTCCCTTGCAAAA  250

seq1  GCAACCAGTGCATTTAACCAATGAGCCATCTCTCTAGCCCCAAGACTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAGTGCATTTAACCAATGAGCCATCTCTCTAGCCCCAAGACTAAG  300

seq1  TTTTATTTAAAAATCTATAATAATCCTTGTTAAACATATCTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAAAAATCTATAATAATCCTTGTTAAACATATCTTTTTTTTTT  350

seq1  TTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC  400

seq1  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAA  450

seq1  ATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACC  500

seq1  ACCGCCCGGCTCTCTTTTTTTTTTCTTTTTTTAAACATATCTTAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCCGGCTCTCTTTTTTTTTTCTTTTTTTAAACATATCTTAAAAAAA  550

seq1  AAAAGTATGCTCTGTAAAAATAAACACAACTGGAGCTGGTGAGATGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGCTCTGTAAAAATAAACACAACTGGAGCTGGTGAGATGGCTC  600

seq1  AGTAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCC  650
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  AGTAGTTAAGAACACTGACTGCTCTTCCAGAAGTCCTGAGTTCAATTCCC  650

seq1  AGGAACCACATGGTGGCTCACAACCATCTGATGCCCTCTTCAGGCAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCACATGGTGGCTCACAACCATCTGATGCCCTCTTCAGGCAAGTG  700

seq1  GCACAGCACTCATACATTAAATAAAATTTTTAAAAAACACAAACAAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCACTCATACATTAAATAAAATTTTTAAAAAACACAAACAAGTAA  750

seq1  GGAAGAGGGCTGGAGAGATGGTGCAGCGGTTAAGAGCATTGACTACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGGCTGGAGAGATGGTGCAGCGGTTAAGAGCATTGACTACTCTT  800

seq1  CCAGAGGCCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCACAACCA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCAGAGGCCCTGAGTTCAACTCCCAGCAACCACATGGTGGCTCA-AACCA  849

seq1  TCTGTAATGGGATCTGATGCCCTTTTCTGGT-GTGCCTGAAGAGAGCAAT  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTGTAATGGGATCTGATGCCCTTTTCTGGTGGTGCCTGAAGAGAGCAAT  899

seq1  GGTATTCATACATAAAAATAAATAAACAAACAAATCTTTAAAAAAAAAAA  949
      ||||||| |||||  |||| ||||| |  |||||||||| ||||||||||
seq2  GGTATTCCTACAT-TAAATTAATAACC--ACAAATCTTT-AAAAAAAAAA  945

seq1  AAGGAAGGAAGAAAAATGGGCGTTGTGGGTTTTTTTAAATCAAAAATGGA  999
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAG-AAAATGGGCGTTGTGGGTTTTTTTAAATCAAAAATGGA  994

seq1  TTTTTTTTTCAGGTTCTCCCCACCTCCACCCC-AAGACAGGGTTTCTCTG  1048
       |||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  -TTTTTTTTCAGG-TCTCCCCACCTCCACCCCAAAGACAGGGTTTCTCTG  1042

seq1  TG  1050
      ||
seq2  TG  1044

seq1: chr16_32166667_32167039
seq2: B6Ng01-349B06.g_67_439 (reverse)

seq1  CCCTCCCCCTTCTCCCTCTAACATTCCTATATATCCCACCCTGTTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCTTCTCCCTCTAACATTCCTATATATCCCACCCTGTTCTCTT  50

seq1  CCAAATTCATGGCCTCTTCCACTTTAACTGTTTTACATATATATGTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCATGGCCTCTTCCACTTTAACTGTTTTACATATATATGTAAAC  100

seq1  ACACACACACACACATTTATTCACTTGTAAAGGTAACAATGATGGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATTTATTCACTTGTAAAGGTAACAATGATGGCACCA  150

seq1  TTGAAGAAGAAAACAAGTGTAGAGAAAATTGTGTCACACTAAGGTTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAGAAAACAAGTGTAGAGAAAATTGTGTCACACTAAGGTTTCTG  200

seq1  ACTCAAACTTTTTCCTTTGTGTCTACCAGTGTGTGGCTAACTCTTATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACTTTTTCCTTTGTGTCTACCAGTGTGTGGCTAACTCTTATCTC  250

seq1  TAGCACCAAGCTTCTTTTCCAAGAAAGGGCTTGTATTCATATTTAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCAAGCTTCTTTTCCAAGAAAGGGCTTGTATTCATATTTAAAACA  300

seq1  TTTATTTATTTATTTATTTATTTATTTATTTGAGACAGGCTCTTTCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTGAGACAGGCTCTTTCTACA  350

seq1  TAGCCTTGGCTGTTTGGGAATTC  373
      |||||||||||||||||||||||
seq2  TAGCCTTGGCTGTTTGGGAATTC  373