BAC Information

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BAC

Clone NameB6Ng01-349F08
Chromosome16 (Build37)
Map Location 75,294,886 - 75,407,230
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349F08.bB6Ng01-349F08.g
ACCGA130357GA130358
length1,2721,172
definitionB6Ng01-349F08.b B6Ng01-349F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,294,886 - 75,295,941)(75,406,061 - 75,407,230)
sequence
gaattcttacataaaacagaggaatgcaaacacagaaggtctaacaggaa
ccacctgggatagaattcattgttaacaactgggatcaacaagggctcca
cctaagattcacttaatcttagaagccaggatcaaaggcttcgaaccctt
gccatagttcctattttagtttattgtatagtccaccttcctcttaggcc
attgtaaatatgtgtgtatgggtgtaactccactatagttctaagtatct
attctcgtttctccttcggtctgaaacttccttcttcctagtgatggtaa
attcctgtgtaagggagtgacttagcttttacattcttactgaatttcaa
gcccatggtcttgctcaaggacgttctaggactgttggaacactggagga
aggctttagctatgtcagaattcaatcttaaaaggcacttataataggat
aatactaaaggagagcacgtggacccatgcactagactaacgccggaatg
gaaaattaatgtatgggttagagagaacgccagactccaggagtgagttt
ccgtgaaactcttctgcctcagtgagtagcttctaagcctctcggcctgt
caagctgactcatccagagcgcgtggcataagctgaataaaccctttcct
ccccaacttgcttcttggtcatgatgtttgtgcagggatagaaaccctga
ctaagacaatgtcaaaacacataatttcaaatagtaaattaatttttaaa
aaatatttctgtagttggttttgtttcaaagaataaacctggctcacata
atcatgtgccctaactttaactggcagtactgctggccaactatatatag
accatgcaaggctggggtttgtatgtaatcctcaagactttccatttgca
attagtttaaaagagccttgtctcttaccaaaagcccactccaatcgcta
accaattataagtcatagtcttaaaatgtgttaaattaggggaaggggag
aacaaaggatcacaaagaaatgactgcacatctgtccaggagaggaaagt
ggtggtgtatactttcagaacatgactacgcatgcagtatttttgacgag
taggtttaaaatcaaggtttgacatgatttcttcttttctggaacaagcc
aaagtcaatttattaagtaaatatagaaaggaactctgagaaaacatgtc
cctgctcttctaggatgggctacttcaaggtcttgtctcggtttcctctc
tgggagaaatataaaatttttc

gaattcccagatttatgttgttataaactcccctatccctgcccacctga
aatggcgtatattagaagcaaacctgtttcaaatggagagaaatgtatct
acattaacactttggaatgcaggaaattgatatgaaagcaaatgctctgt
tttccagataagtcagatttattatattaggactgtaggatcacttttca
tttaagtggtatcacttatttgctacaacattcctaatgtatattgtagt
ggtaccataagcaatttctttcaatttttaaaattttcatacagcaaaat
tttcctaaacatgtgatttcagaacctttacaaatcatctcctgcaattt
caataccatgaagtctgtatatttcataaatatttcatatttcaagggaa
gaaaaatagaacaagaatatcagatttctttaagaattcttcccgatcta
tatattgacaagccctcacttcttgaaatcccttaaaatggatatttccg
gtgtgtgtgtcatgtctttagacaggtggttggaccagggagaatggagc
tgataaatgagcagacaaagttcatacaatagtcaacttcattcagggca
tttggcaacttatactctgagggttagaagtccttgtgtgtaaaatcctc
atgatttcaagctgtatgcattcacaacaacaagaacaagctgcatatgg
ctgaaacacgttttccatagaggcaaaataggataccaacagcaagcaat
agcaagcaatctggaaggagcatgaaaacacattccaaagagactctgtg
ttgtgtagaaactgaaatcacaagactcttaccttgctttcctggagtgt
ttcatgagcattcagaattctcctcatatgactctatgcctggactgtgt
tccagcaatggtgcctttttgttggaatatttagcctgaagatttcttcc
tgggttctttcattgtgagttgctagaataatacaatgcctggatctacc
cacagctattttctgttctccaagtctttacatgataagtaaatcactct
aaacctctgtgattagtcttttggtgataaaaatttgagatgtggtggat
aaataaacacaattttcttgcctggacatacaaagaaggaagttcagtta
agttgaacagctgacctttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_75294886_75295941
seq2: B6Ng01-349F08.b_262_1321

seq1  TGTGTATGGGTGTAACTCCACTATAGTTCTAAGTATCTATTCTCGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGGTGTAACTCCACTATAGTTCTAAGTATCTATTCTCGTTTCT  50

seq1  CCTTCGGTCTGAAACTTCCTTCTTCCTAGTGATGGTAAATTCCTGTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGGTCTGAAACTTCCTTCTTCCTAGTGATGGTAAATTCCTGTGTAA  100

seq1  GGGAGTGACTTAGCTTTTACATTCTTACTGAATTTCAAGCCCATGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGACTTAGCTTTTACATTCTTACTGAATTTCAAGCCCATGGTCTT  150

seq1  GCTCAAGGACGTTCTAGGACTGTTGGAACACTGGAGGAAGGCTTTAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGACGTTCTAGGACTGTTGGAACACTGGAGGAAGGCTTTAGCTA  200

seq1  TGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGATAATACTAAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGATAATACTAAAGGA  250

seq1  GAGCACGTGGACCCATGCACTAGACTAACGCCGGAATGGAAAATTAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGTGGACCCATGCACTAGACTAACGCCGGAATGGAAAATTAATGT  300

seq1  ATGGGTTAGAGAGAACGCCAGACTCCAGGAGTGAGTTTCCGTGAAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTAGAGAGAACGCCAGACTCCAGGAGTGAGTTTCCGTGAAACTCT  350

seq1  TCTGCCTCAGTGAGTAGCTTCTAAGCCTCTCGGCCTGTCAAGCTGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCAGTGAGTAGCTTCTAAGCCTCTCGGCCTGTCAAGCTGACTCA  400

seq1  TCCAGAGCGCGTGGCATAAGCTGAATAAACCCTTTCCTCCCCAACTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCGCGTGGCATAAGCTGAATAAACCCTTTCCTCCCCAACTTGCT  450

seq1  TCTTGGTCATGATGTTTGTGCAGGGATAGAAACCCTGACTAAGACAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCATGATGTTTGTGCAGGGATAGAAACCCTGACTAAGACAATGT  500

seq1  CAAAACACATAATTTCAAATAGTAAATTAATTTTTAAAAAATATTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACATAATTTCAAATAGTAAATTAATTTTTAAAAAATATTTCTGT  550

seq1  AGTTGGTTTTGTTTCAAAGAATAAACCTGGCTCACATAATCATGTGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTTTGTTTCAAAGAATAAACCTGGCTCACATAATCATGTGCCCT  600

seq1  AACTTTAACTGGCAGTACTGCTGGCCAACTATATATAGACCATGCAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAACTGGCAGTACTGCTGGCCAACTATATATAGACCATGCAAGGC  650

seq1  TGGGGTTTGTATGTAATCCTCAAGACTTTCCATTTGCAATTAGTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTGTATGTAATCCTCAAGACTTTCCATTTGCAATTAGTTTAAAA  700

seq1  GAGCCTTGTCTCTTACCAAAAGCCCACTCCAATCGCTAACCAATTATAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTTGTCTCTTACCAAAAGCCCACTCCAATCGCTAACCAATTATAAG  750

seq1  TCATAGTCTTAAAATGTGTTAAATTAGGGGAAGGGGAGAACAAAGGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCTTAAAATGTGTTAAATTAGGGGAAGGGGAGAACAAAGGATCA  800

seq1  CAAAGAAATGACTGCACATCTGTCCA-GAGAGGAAAGT-GTGGTGTATAC  848
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  CAAAGAAATGACTGCACATCTGTCCAGGAGAGGAAAGTGGTGGTGTATAC  850

seq1  TTTCAGAACATGACTACGCATGCAGTTATTTTGACGAGTAAGTTTTAAAA  898
      ||||||||||||||||||||||||||  ||||||||||| || |||||||
seq2  TTTCAGAACATGACTACGCATGCAGTATTTTTGACGAGT-AGGTTTAAAA  899

seq1  TCAGGGTTATGACATGATTTCCTTCTTTTCTGGAACAAGCCAAAAGTCA-  947
      ||| |||| ||||||||||| |||||||||||||||||||| ||||||| 
seq2  TCAAGGTT-TGACATGATTT-CTTCTTTTCTGGAACAAGCC-AAAGTCAA  946

seq1  -TTATTTAGT-AATATAGAAAGGAACTCTGAG-AAACATGTCCCCTTGCT  994
       ||||| ||| ||||||||||||||||||||| |||||||||||  ||||
seq2  TTTATTAAGTAAATATAGAAAGGAACTCTGAGAAAACATGTCCC--TGCT  994

seq1  CCTTCTTAGGAGTTGGCTACCTTCATAGTGTCTTGTCT---GTTCCTCT-  1040
       |||| ||||| | ||||| ||||| || |||||||||    ||||||| 
seq2  -CTTC-TAGGA-TGGGCTA-CTTCA-AG-GTCTTGTCTCGGTTTCCTCTC  1038

seq1  ---GAGAAATATAA---TTTTC  1056
         |||||||||||   |||||
seq2  TGGGAGAAATATAAAATTTTTC  1060


seq1: chr16_75406061_75407230
seq2: B6Ng01-349F08.g_65_1236 (reverse)

seq1  AAGAAA-GTCAGCTTGTTAAACTAAACTG-ACTTCCT--CTTGTA-GTCC  45
      |||||| |||||| |||| |||| ||||| |||||||   ||||| ||||
seq2  AAGAAAGGTCAGC-TGTTCAACTTAACTGAACTTCCTTCTTTGTATGTCC  49

seq1  A-GCAAGAAAA-TGTG-TTATTTATCCA-CACATCTCAAAATTTTTATCC  91
      | ||||||||| |||| ||||||||||| |||||||| |||||||||| |
seq2  AGGCAAGAAAATTGTGTTTATTTATCCACCACATCTC-AAATTTTTAT-C  97

seq1  ACCAAAAGACTAATCACAGAGTTTTAGAGTGATTTACTTATCATTGTAAA  141
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  ACCAAAAGACTAATCACAGAGGTTTAGAGTGATTTACTTATCA-TGTAAA  146

seq1  GACTTGGAAGAACAGAAAATAGCTGTGGGTAGATCCAGGCATTGTATTAT  191
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGG-AGAACAGAAAATAGCTGTGGGTAGATCCAGGCATTGTATTAT  195

seq1  TCTAGCAACTCACAATGAAAGAACCCAGGAAGAAAATCTTCAGGCTAAAT  241
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTAGCAACTCACAATGAAAGAACCCAGGAAG-AAATCTTCAGGCTAAAT  244

seq1  ATTCCAACAAAAAGGCACCATTGCTGGAACACAGTCCAGGCATAGAGTCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACAAAAAGGCACCATTGCTGGAACACAGTCCAGGCATAGAGTCA  294

seq1  TATGAGGAGAATTCTGAATGCTCATGAAAACACTCCAGGAAAGCAAGGTA  341
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATGAGGAGAATTCTGAATGCTCATG-AAACACTCCAGGAAAGCAAGGTA  343

seq1  AGAGTCTTGTGATTTCAGTTTCTACACAACACAGAGTCTCTTTGGAATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTTGTGATTTCAGTTTCTACACAACACAGAGTCTCTTTGGAATGT  393

seq1  GTTTTCATGCTCCTTCCAGATTGCTTGCTATTGCTTGCTGTTGGTATCCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATGCTCCTTCCAGATTGCTTGCTATTGCTTGCTGTTGGTATCCT  443

seq1  ATTTTGCCTCTATGGAAAACGTGTTTCAGCCATATGCAGCTTGTTCTTGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCTCTATGGAAAACGTGTTTCAGCCATATGCAGCTTGTTCTTGT  493

seq1  TGTTGTGAATGCATACAGCTTGAAATCATGAGGATTTTACACACAAGGAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGAATGCATACAGCTTGAAATCATGAGGATTTTACACACAAGGAC  543

seq1  TTCTAACCCTCAGAGTATAAGTTGCCAAATGCCCTGAATGAAGTTGACTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCCTCAGAGTATAAGTTGCCAAATGCCCTGAATGAAGTTGACTA  593

seq1  TTGTATGAACTTTGTCTGCTCATTTATCAGCTCCATTCTCCCTGGTCCAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAACTTTGTCTGCTCATTTATCAGCTCCATTCTCCCTGGTCCAA  643

seq1  CCACCTGTCTAAAGACATGACACACACACCGGAAATATCCATTTTAAGGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTCTAAAGACATGACACACACACCGGAAATATCCATTTTAAGGG  693

seq1  ATTTCAAGAAGTGAGGGCTTGTCAATATATAGATCGGGAAGAATTCTTAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGAAGTGAGGGCTTGTCAATATATAGATCGGGAAGAATTCTTAA  743

seq1  AGAAATCTGATATTCTTGTTCTATTTTTCTTCCCTTGAAATATGAAATAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTGATATTCTTGTTCTATTTTTCTTCCCTTGAAATATGAAATAT  793

seq1  TTATGAAATATACAGACTTCATGGTATTGAAATTGCAGGAGATGATTTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATATACAGACTTCATGGTATTGAAATTGCAGGAGATGATTTGT  843

seq1  AAAGGTTCTGAAATCACATGTTTAGGAAAATTTTGCTGTATGAAAATTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCTGAAATCACATGTTTAGGAAAATTTTGCTGTATGAAAATTTT  893

seq1  AAAAATTGAAAGAAATTGCTTATGGTACCACTACAATATACATTAGGAAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGAAAGAAATTGCTTATGGTACCACTACAATATACATTAGGAAT  943

seq1  GTTGTAGCAAATAAGTGATACCACTTAAATGAAAAGTGATCCTACAGTCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGCAAATAAGTGATACCACTTAAATGAAAAGTGATCCTACAGTCC  993

seq1  TAATATAATAAATCTGACTTATCTGGAAAACAGAGCATTTGCTTTCATAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATAAATCTGACTTATCTGGAAAACAGAGCATTTGCTTTCATAT  1043

seq1  CAATTTCCTGCATTCCAAAGTGTTAATGTAGATACATTTCTCTCCATTTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCCTGCATTCCAAAGTGTTAATGTAGATACATTTCTCTCCATTTG  1093

seq1  AAACAGGTTTGCTTCTAATATACGCCATTTCAGGTGGGCAGGGATAGGGG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTTTGCTTCTAATATACGCCATTTCAGGTGGGCAGGGATAGGGG  1143

seq1  AGTTTATAACAACATAAATCTGGGAATTC  1170
      |||||||||||||||||||||||||||||
seq2  AGTTTATAACAACATAAATCTGGGAATTC  1172


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