BAC Information

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BAC

Clone NameB6Ng01-349H23
Chromosome16 (Build37)
Map Location 62,183,186 - 62,284,823
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349H23.bB6Ng01-349H23.g
ACCGA130472GA130473
length1,1161,072
definitionB6Ng01-349H23.b B6Ng01-349H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,183,186 - 62,184,295)(62,283,749 - 62,284,823)
sequence
gaattccctaacatggatgctaaggaccttgatgaaaacatatagaatca
aggaagctcaagtgtaaagtcatagtaacaaagaaaaagagattccactg
actgaaataatgtgtgcagaaaggcaactatagtagcagtgaaaatccca
aacttaacaagaacacacaaagtgaatgtctgaaaaggtgtttaaaaatg
ctatgtcaacagaataagaactttcttcttctctgttaacttatttatat
aaacttctaataattttgatacttttccttaagtatcaattacatcatga
tactttgtatcatgtagattccattattattattgtgttcactttctgtt
cccttaaaatggccaaactagagctagagtaattattatcataaactggt
tttgcagtattatcaacatttggatttgcagaaaaggatctttaaaatta
acacttggaatcctagtttcaacatgggaagatctggaagtctgaatctt
acctgtcttcctgtatgtcacatacgcattagaagctgtaaacaactgga
tgcaaattgtagtttaaaaataagaaatcatgcattaaaatcattaatat
tttgtaatttagttaatgacttctcatctttttatacacatttgtatatt
ttaattcttcctataaagaatattctctatgtacacatgtatgacataca
atagggatctaaaaaaataaaaatattattgacagactaggaagcaatag
gttccaattatattttttgtgattatttaccatttaactctgaatatata
tgatatacttatgaaattttttaattttagttgagttatgtgaaagataa
tagagtattttgttatgagctaaatatttgcttccaagcttcaagtgcta
aaaaaattaaaactccggaactctaaatgcaacatttctttggaaaaaga
gtgttttcatagatgatccagtatgctcattacagcaagtcctgatacaa
gacgagtggccttatttgtagaacaaaacttggaccacagaagacaccat
tgagagacatgggtgaagaagggaaagctagccacgtagcatagagccat
atcatgaaaaataacc

gaattcatgaatttgtgtttttaagtgattgaaacatgtggaccccttct
gagttcacagttttcctctgtttgttggaagcttgagagactgaagtaaa
tggttaaaggcaaccatcttatttatttctctcaaaagtccaaggtttgt
tttgcaaaacagacaaaactgaatcaaatatgtaacccatgactgggcta
ccatgtaaaacttagcttggcatgctgtaagtttgaaagttcaaaatttt
ctctttattagtagggcatttattgaaactctatggagggacttaataaa
tttagtttatttccattttcactcacaataatggtaattccactagtatt
ttgggggagattacagattagtttcattaaaaatattttaaaaaccctat
taaagagtttatggaaacatgagcttgtacctttagggtcttatacccca
tttaaaaaatggtcaaaataattaacagtttgggggctgaaaaaaaaaaa
acagtaacacaagaaataaactcagaatcttgaccattttttttacagta
catattttatcctcctctgatccaccctctgattgtttcttcttagattt
cactatgagaaattatttgtaaaattatttaattataaaaataatgtatg
taagaaattatttaattttctttatttatattatataaatacatatttat
aaggtaaattcgtattttcaggttgaatgaaagagaattaaccctttaga
tgataaaatgcttgcgctgattacctgttttcattaaatttctccatatg
cacaatctggcctgagagtcttcactgcacttggtttggggctgttcagg
caatagagatgagttaatttcttttttttttctttttttttttattacgc
atttttcttcaaatacatttccaatggtatcccaaagtccccccccttcc
ctacccacccattccatttttggccctggcatccctgtactggggcataa
tacgtttgcctgacaatgggcctctctttcagtgatgatcgactagttca
tcttttgaatacatatgcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62183186_62184295
seq2: B6Ng01-349H23.b_47_1162

seq1  GAATTCCCTAACATGGATGCTAAGGACCTTGATGAAAACATATAGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAACATGGATGCTAAGGACCTTGATGAAAACATATAGAATCA  50

seq1  AGGAAGCTCAAGTGTAAAGTCATAGTAACAAAGAAAAAGAGATTCCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTCAAGTGTAAAGTCATAGTAACAAAGAAAAAGAGATTCCACTG  100

seq1  ACTGAAATAATGTGTGCAGAAAGGCAACTATAGTAGCAGTGAAAATCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATAATGTGTGCAGAAAGGCAACTATAGTAGCAGTGAAAATCCCA  150

seq1  AACTTAACAAGAACACACAAAGTGAATGTCTGAAAAGGTGTTTAAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACAAGAACACACAAAGTGAATGTCTGAAAAGGTGTTTAAAAATG  200

seq1  CTATGTCAACAGAATAAGAACTTTCTTCTTCTCTGTTAACTTATTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCAACAGAATAAGAACTTTCTTCTTCTCTGTTAACTTATTTATAT  250

seq1  AAACTTCTAATAATTTTGATACTTTTCCTTAAGTATCAATTACATCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTAATAATTTTGATACTTTTCCTTAAGTATCAATTACATCATGA  300

seq1  TACTTTGTATCATGTAGATTCCATTATTATTATTGTGTTCACTTTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTATCATGTAGATTCCATTATTATTATTGTGTTCACTTTCTGTT  350

seq1  CCCTTAAAATGGCCAAACTAGAGCTAGAGTAATTATTATCATAAACTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAAATGGCCAAACTAGAGCTAGAGTAATTATTATCATAAACTGGT  400

seq1  TTTGCAGTATTATCAACATTTGGATTTGCAGAAAAGGATCTTTAAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTATTATCAACATTTGGATTTGCAGAAAAGGATCTTTAAAATTA  450

seq1  ACACTTGGAATCCTAGTTTCAACATGGGAAGATCTGGAAGTCTGAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGGAATCCTAGTTTCAACATGGGAAGATCTGGAAGTCTGAATCTT  500

seq1  ACCTGTCTTCCTGTATGTCACATACGCATTAGAAGCTGTAAACAACTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTTCCTGTATGTCACATACGCATTAGAAGCTGTAAACAACTGGA  550

seq1  TGCAAATTGTAGTTTAAAAATAAGAAATCATGCATTAAAATCATTAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTGTAGTTTAAAAATAAGAAATCATGCATTAAAATCATTAATAT  600

seq1  TTTGTAATTTAGTTAATGACTTCTCATCTTTTTATACACATTTGTATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATTTAGTTAATGACTTCTCATCTTTTTATACACATTTGTATATT  650

seq1  TTAATTCTTCCTATAAAGAATATTCTCTATGTACACATGTATGACATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCTTCCTATAAAGAATATTCTCTATGTACACATGTATGACATACA  700

seq1  ATAGGGATCTAAAAAAATAAAAATATTATTGACAGACTAGGAAGCAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGATCTAAAAAAATAAAAATATTATTGACAGACTAGGAAGCAATAG  750

seq1  GTTCCAATTATA-TTTTTGTGATTATTTACCATTTAACTCTGAATATATA  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTTCCAATTATATTTTTTGTGATTATTTACCATTTAACTCTGAATATATA  800

seq1  TGATATACTTATGAAATTTTTTAATTTTAGTTGAGTTATGTGAAAGATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATACTTATGAAATTTTTTAATTTTAGTTGAGTTATGTGAAAGATAA  850

seq1  TAGAGTATTTTGTTATGAGCTAAATATTTGCTTCCAAGCTTCAAGTGCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATTTTGTTATGAGCTAAATATTTGCTTCCAAGCTTCAAGTGCTA  900

seq1  AAAAAATTAAAACTCCGGAACTCTAAATGCAACA-TTCTTTGGAAAAAGA  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAAATTAAAACTCCGGAACTCTAAATGCAACATTTCTTTGGAAAAAGA  950

seq1  GTGTTTTCATAGATGATCAAGTATGCTCATTACAGCAAGTCCTGATACAA  998
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGTTTTCATAGATGATCCAGTATGCTCATTACAGCAAGTCCTGATACAA  1000

seq1  GACGAGTGG-CTTATTTGTAGAACAAAACTTGGA-CACAG-AGACA-CAT  1044
      ||||||||| |||||||||||||||||||||||| ||||| ||||| |||
seq2  GACGAGTGGCCTTATTTGTAGAACAAAACTTGGACCACAGAAGACACCAT  1050

seq1  TGAGAGACAT-GGTGAAGA--GGGAAGCTAGCAACCGTTAAGCAATAGAG  1091
      |||||||||| ||||||||  || |||||||| | |||  ||| ||||||
seq2  TGAGAGACATGGGTGAAGAAGGGAAAGCTAGCCA-CGT--AGC-ATAGAG  1096

seq1  -CATATCATGAAAAATAACC  1110
       |||||||||||||||||||
seq2  CCATATCATGAAAAATAACC  1116


seq1: chr16_62283749_62284823
seq2: B6Ng01-349H23.g_64_1135 (reverse)

seq1  AGCTGCATATGTA-TCAAAAGATGACCTAGTCGGCCATCACTGGAAAGAG  49
      ||||||||||||| ||||||||||| |||||||  ||||||| |||||||
seq2  AGCTGCATATGTATTCAAAAGATGAACTAGTCGATCATCACT-GAAAGAG  49

seq1  AGGCCCATTGGTCAGGCAAACGTTATATGCCCCAGTACAGGGGAATGCCA  99
      ||||||||| |||||||||||||  |||||||||||||||||  ||||||
seq2  AGGCCCATT-GTCAGGCAAACGTATTATGCCCCAGTACAGGG--ATGCCA  96

seq1  GGGCCAAAAAATGGGAATGGGTGGGTAGGGGAGGGGGGGGACTTTTGGGA  149
      ||||||||||   ||||||||||||||||| ||||||||||| |||||||
seq2  GGGCCAAAAA--TGGAATGGGTGGGTAGGGAAGGGGGGGGAC-TTTGGGA  143

seq1  TACCATTGGAAATGTAATTGAAG-AAAATGCGTAATAAAAAAAAAA--GA  196
      |||||||||||||||| |||||| ||||||||||||||||||||||   |
seq2  TACCATTGGAAATGTATTTGAAGAAAAATGCGTAATAAAAAAAAAAAGAA  193

seq1  AAAAAAAAGAAATTAACTCATCTCTATTGCCTGAACAGCCCCAAACCAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAATTAACTCATCTCTATTGCCTGAACAGCCCCAAACCAAG  243

seq1  TGCAGTGAAGACTCTCAGGCCAGATTGTGCATATGGAGAAATTTAATGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAAGACTCTCAGGCCAGATTGTGCATATGGAGAAATTTAATGAA  293

seq1  AACAGGTAATCAGCGCAAGCATTTTATCATCTAAAGGGTTAATTCTCTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTAATCAGCGCAAGCATTTTATCATCTAAAGGGTTAATTCTCTTT  343

seq1  CATTCAACCTGAAAATACGAATTTACCTTATAAATATGTATTTATATAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACCTGAAAATACGAATTTACCTTATAAATATGTATTTATATAAT  393

seq1  ATAAATAAAGAAAATTAAATAATTTCTTACATACATTATTTTTATAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAGAAAATTAAATAATTTCTTACATACATTATTTTTATAATTA  443

seq1  AATAATTTTACAAATAATTTCTCATAGTGAAATCTAAGAAGAAACAATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTACAAATAATTTCTCATAGTGAAATCTAAGAAGAAACAATCA  493

seq1  GAGGGTGGATCAGAGGAGGATAAAATATGTACTGTAAAAAAAATGGTCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGATCAGAGGAGGATAAAATATGTACTGTAAAAAAAATGGTCAA  543

seq1  GATTCTGAGTTTATTTCTTGTGTTACTGTTTTTTTTTTTTCAGCCCCCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGAGTTTATTTCTTGTGTTACTGTTTTTTTTTTTTCAGCCCCCAA  593

seq1  ACTGTTAATTATTTTGACCATTTTTTAAATGGGGTATAAGACCCTAAAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAATTATTTTGACCATTTTTTAAATGGGGTATAAGACCCTAAAGG  643

seq1  TACAAGCTCATGTTTCCATAAACTCTTTAATAGGGTTTTTAAAATATTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTCATGTTTCCATAAACTCTTTAATAGGGTTTTTAAAATATTTT  693

seq1  TAATGAAACTAATCTGTAATCTCCCCCAAAATACTAGTGGAATTACCATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACTAATCTGTAATCTCCCCCAAAATACTAGTGGAATTACCATT  743

seq1  ATTGTGAGTGAAAATGGAAATAAACTAAATTTATTAAGTCCCTCCATAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGTGAAAATGGAAATAAACTAAATTTATTAAGTCCCTCCATAGA  793

seq1  GTTTCAATAAATGCCCTACTAATAAAGAGAAAATTTTGAACTTTCAAACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATAAATGCCCTACTAATAAAGAGAAAATTTTGAACTTTCAAACT  843

seq1  TACAGCATGCCAAGCTAAGTTTTACATGGTAGCCCAGTCATGGGTTACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATGCCAAGCTAAGTTTTACATGGTAGCCCAGTCATGGGTTACAT  893

seq1  ATTTGATTCAGTTTTGTCTGTTTTGCAAAACAAACCTTGGACTTTTGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTCAGTTTTGTCTGTTTTGCAAAACAAACCTTGGACTTTTGAGA  943

seq1  GAAATAAATAAGATGGTTGCCTTTAACCATTTACTTCAGTCTCTCAAGCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATAAGATGGTTGCCTTTAACCATTTACTTCAGTCTCTCAAGCT  993

seq1  TCCAACAAACAGAGGAAAACTGTGAACTCAGAAGGGGTCCACATGTTTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACAAACAGAGGAAAACTGTGAACTCAGAAGGGGTCCACATGTTTCA  1043

seq1  ATCACTTAAAAACACAAATTCATGAATTC  1075
      |||||||||||||||||||||||||||||
seq2  ATCACTTAAAAACACAAATTCATGAATTC  1072


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