BAC Information

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BAC

Clone NameB6Ng01-349I01
Chromosome16 (Build37)
Map Location 72,648,761 - 72,774,105
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349I01.bB6Ng01-349I01.g
ACCGA130476GA130477
length1,1851,035
definitionB6Ng01-349I01.b B6Ng01-349I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,772,914 - 72,774,105)(72,648,761 - 72,649,784)
sequence
gaattcttgggccccatttcagaccagctctctcaggagacttgggaggg
tagaatgttggtagtctggtaacaaaccaggcaggtagactgaagacaca
catgactgctggagagtttaagaaaacataccccgaggttagtcacactt
tgagaaggttagataaaagatgacatttaatttgtcacaacagaacatca
cgcccactattccaataatgcttcaatcaaagagaacggtttacattttg
gtaaaatggagccaacgacaagaacttaaagcataagggtgaaaacacat
ctccaccgcttcttgggaaggttcaaacttctatgtatagaaagtagctt
agaattggcagtttttaagcctactttgttagatcataactacattgatt
caccgcaaaaatcatcactcctttgtaagcagaaacctaggcgtgccctc
ctgcaccttaccaactcctcttccttctcactccagagaagaaaagagtt
gcattagcacgatgggctgtgtgatgcacagacagcagaaatggaaatca
cgcccagtgtgttgctggaaacctctgatctccatctcactgcaacgagc
aagggtgtcatgcaccagtaacctgacctttaacccgagcttgccttggg
gactccggagatggactaaaccaggggatatatggtcattgcgactaaag
agcttgtcaaaagttgtactgttctcctagggagtaattggaatctgaaa
tgtactgtaaactgcctggaacagcaaatataacacatcttatttctcct
tggtactcaaatgtaactaggcaaaattaaacattttcccatcagacgga
gagagattctgctaccttggtttcagtatttgtctgagtgcttgatataa
aacatactcaagaaaaaaacatagcaacatttaaacatatactctgaagg
tgtcaatgtcttaccagaacagcatcataatttcggagaatatgggacac
aaagttgagacttcaaagggatcttatctttggtgtcattggtacaaatt
aaagcagatactttttaatttctaaacttaggactgcatatgggtggata
cgtgtatttttctttgctccaattatgcttctggccaaaggtgctctttg
taccagcaggaaaacgccggttcttccaatcaatg
gaattcattctgagaaatgaaatccagattatttaatacatactacagct
agagacagtatcaacaatctaacatcccagattcaacacatcagacaaga
aaaaaataacgacggcagctttttttcaaacattcaagccaggcatgttt
tagagaaaccaacaagtctgtcttcatagtgtctgtctcctgctgtgggt
ggcagagctactgcctttaaaatacttctgaaataaatgtaaccatccat
taaagcagcatgcagtactaccataaaaccaggtaggctcatcagtctat
gcattttatgttacttggaccattatcactatttttatggaagaatttat
aagccaattatatatatttataactgttataaaactagcattgggttttc
ctcagcgaaatgtgaatagcatagaaagaatgcttaaaaatgcctaaaat
tataagataaagcattcacttaattgcccagactgatggtttacaaaaaa
tatactaactatactgttttaattgctttgtaaggctactcttacaaatc
tcatattcatatactcatattaatacattccgaagaggtatgctaattat
taagacgaggtaatacatatcctgttcaaagaccctaaatttcgagacac
ctcgaatctgacaattaacagtttaagattacgttgacgtaatctaagac
aatctgattttcagctgcaaaacacacacacacacacaattaaacatgaa
taacaaaatctcagttttgatatgtgttaagaaatttttataacttccga
gtttaattccctaccattttagccatgttactttcttatctttttctatt
gatgatctcccccaacccccaccccctacccccacatggaaatttcattt
ccctgtagtcaaaagggaagtttgtaatttctcacactctaaacagctaa
ggggcaacagttgcattgtgttctatgcccctcccccttcactcaatgga
cgcattttcccagaaggtcttctgtgaaccactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72772914_72774105
seq2: B6Ng01-349I01.b_50_1234 (reverse)

seq1  CATTGATGTGAAGAACCGTTGTGTTTTCCTGGCTGGTACAAAGAGCACCT  50
      |||||||  |||||||||  | |||||||| |||||||||||||||||||
seq2  CATTGATTGGAAGAACCG--GCGTTTTCCT-GCTGGTACAAAGAGCACCT  47

seq1  TCTGGCAGAAGCATAATGGGAGAAAAG-AAAATACACGTATCCACCCATA  99
      |  | |||||||||||| |||| |||| ||||||||||||||||||||||
seq2  TTGGCCAGAAGCATAATTGGAGCAAAGAAAAATACACGTATCCACCCATA  97

seq1  TGCAGGTTCTAGTTTTAGAAATT-AAAAGTATCTTGCTTTAAATTTGTTT  148
      |||| || |||  |||||||||| ||||||||| |||||| |||||| | 
seq2  TGCA-GTCCTAAGTTTAGAAATTAAAAAGTATC-TGCTTT-AATTTG-TA  143

seq1  CCAATGACACCAAAGATTAGATTCCCTTTGAAGTCTCAACTTTGTGTCCC  198
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  CCAATGACACCAAAGATAAGA-TCCCTTTGAAGTCTCAACTTTGTGTCCC  192

seq1  ATATTCTCCGAAATTATGATGCTGTTCTGGTAAGACATTGACACCTTCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTCCGAAATTATGATGCTGTTCTGGTAAGACATTGACACCTTCAG  242

seq1  AGTATATGTTTAAATGTTGCTATGTTTTTTTCTTTGAGTATGTTTTATAT  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTATATGTTTAAATGTTGCTATGTTTTTTTC-TTGAGTATGTTTTATAT  291

seq1  CAAGCACTCAGACAAATACTGAAACCAAGGTAGCAGAATCTCTCTCCGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTCAGACAAATACTGAAACCAAGGTAGCAGAATCTCTCTCCGTC  341

seq1  TGATGGGAAAATGTTTAATTTTGCCTAGTTACATTTGAGTACCAAGGAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAAAATGTTTAATTTTGCCTAGTTACATTTGAGTACCAAGGAGA  391

seq1  AATAAGATGTGTTATATTTGCTGTTCCAGGCAGTTTACAGTACATTTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATGTGTTATATTTGCTGTTCCAGGCAGTTTACAGTACATTTCAG  441

seq1  ATTCCAATTACTCCCTAGGAGAACAGTACAACTTTTGACAAGCTCTTTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTACTCCCTAGGAGAACAGTACAACTTTTGACAAGCTCTTTAG  491

seq1  TCGCAATGACCATATATCCCCTGGTTTAGTCCATCTCCGGAGTCCCCAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAATGACCATATATCCCCTGGTTTAGTCCATCTCCGGAGTCCCCAAG  541

seq1  GCAAGCTCGGGTTAAAGGTCAGGTTACTGGTGCATGACACCCTTGCTCGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTCGGGTTAAAGGTCAGGTTACTGGTGCATGACACCCTTGCTCGT  591

seq1  TGCAGTGAGATGGAGATCAGAGGTTTCCAGCAACACACTGGGCGTGATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAGATGGAGATCAGAGGTTTCCAGCAACACACTGGGCGTGATTT  641

seq1  CCATTTCTGCTGTCTGTGCATCACACAGCCCATCGTGCTAATGCAACTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGCTGTCTGTGCATCACACAGCCCATCGTGCTAATGCAACTCT  691

seq1  TTTCTTCTCTGGAGTGAGAAGGAAGAGGAGTTGGTAAGGTGCAGGAGGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCTGGAGTGAGAAGGAAGAGGAGTTGGTAAGGTGCAGGAGGGC  741

seq1  ACGCCTAGGTTTCTGCTTACAAAGGAGTGATGATTTTTGCGGTGAATCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTAGGTTTCTGCTTACAAAGGAGTGATGATTTTTGCGGTGAATCAA  791

seq1  TGTAGTTATGATCTAACAAAGTAGGCTTAAAAACTGCCAATTCTAAGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTATGATCTAACAAAGTAGGCTTAAAAACTGCCAATTCTAAGCTA  841

seq1  CTTTCTATACATAGAAGTTTGAACCTTCCCAAGAAGCGGTGGAGATGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATACATAGAAGTTTGAACCTTCCCAAGAAGCGGTGGAGATGTGT  891

seq1  TTTCACCCTTATGCTTTAAGTTCTTGTCGTTGGCTCCATTTTACCAAAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCTTATGCTTTAAGTTCTTGTCGTTGGCTCCATTTTACCAAAAT  941

seq1  GTAAACCGTTCTCTTTGATTGAAGCATTATTGGAATAGTGGGCGTGATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCGTTCTCTTTGATTGAAGCATTATTGGAATAGTGGGCGTGATGT  991

seq1  TCTGTTGTGACAAATTAAATGTCATCTTTTATCTAACCTTCTCAAAGTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTGACAAATTAAATGTCATCTTTTATCTAACCTTCTCAAAGTGT  1041

seq1  GACTAACCTCGGGGTATGTTTTCTTAAACTCTCCAGCAGTCATGTGTGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACCTCGGGGTATGTTTTCTTAAACTCTCCAGCAGTCATGTGTGTC  1091

seq1  TTCAGTCTACCTGCCTGGTTTGTTACCAGACTACCAACATTCTACCCTCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTACCTGCCTGGTTTGTTACCAGACTACCAACATTCTACCCTCC  1141

seq1  CAAGTCTCCTGAGAGAGCTGGTCTGAAATGGGGCCCAAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTCCTGAGAGAGCTGGTCTGAAATGGGGCCCAAGAATTC  1185

seq1: chr16_72648761_72649784
seq2: B6Ng01-349I01.g_69_1097

seq1  GAATTCATTCTGAGAAATGAAATCCAGATTATTTAATACATACTACAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGAGAAATGAAATCCAGATTATTTAATACATACTACAGCT  50

seq1  AGAGACAGTATCAACAATCTAACATCCCAGATTCAACACATCAGACAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTATCAACAATCTAACATCCCAGATTCAACACATCAGACAAGA  100

seq1  AAAAAATAACGACGGCAGCTTTTTTTCAAACATTCAAGCCAGGCATGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAACGACGGCAGCTTTTTTTCAAACATTCAAGCCAGGCATGTTT  150

seq1  TAGAGAAACCAACAAGTCTGTCTTCATAGTGTCTGTCTCCTGCTGTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAACCAACAAGTCTGTCTTCATAGTGTCTGTCTCCTGCTGTGGGT  200

seq1  GGCAGAGCTACTGCCTTTAAAATACTTCTGAAATAAATGTAACCATCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTACTGCCTTTAAAATACTTCTGAAATAAATGTAACCATCCAT  250

seq1  TAAAGCAGCATGCAGTACTACCATAAAACCAGGTAGGCTCATCAGTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGCATGCAGTACTACCATAAAACCAGGTAGGCTCATCAGTCTAT  300

seq1  GCATTTTATGTTACTTGGACCATTATCACTATTTTTATGGAAGAATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTATGTTACTTGGACCATTATCACTATTTTTATGGAAGAATTTAT  350

seq1  AAGCCAATTATATATATTTATAACTGTTATAAAACTAGCATTGGGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATTATATATATTTATAACTGTTATAAAACTAGCATTGGGTTTTC  400

seq1  CTCAGCGAAATGTGAATAGCATAGAAAGAATGCTTAAAAATGCCTAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCGAAATGTGAATAGCATAGAAAGAATGCTTAAAAATGCCTAAAAT  450

seq1  TATAAGATAAAGCATTCACTTAATTGCCCAGACTGATGGTTTACAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGATAAAGCATTCACTTAATTGCCCAGACTGATGGTTTACAAAAAA  500

seq1  TATACTAACTATACTGTTTTAATTGCTTTGTAAGGCTACTCTTACAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAACTATACTGTTTTAATTGCTTTGTAAGGCTACTCTTACAAATC  550

seq1  TCATATTCATATACTCATATTAATACATTCCGAAGAGGTATGCTAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCATATACTCATATTAATACATTCCGAAGAGGTATGCTAATTAT  600

seq1  TAAGACGAGGTAATACATATCCTGTTCAAAGACCCTAAATTTCGAGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACGAGGTAATACATATCCTGTTCAAAGACCCTAAATTTCGAGACAC  650

seq1  CTCGAATCTGACAATTAACAGTTTAAGATTACGTTGACGTAATCTAAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATCTGACAATTAACAGTTTAAGATTACGTTGACGTAATCTAAGAC  700

seq1  AATCTGATTTTCAGCTGCAAAACACACACACACACACAATTAAACATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATTTTCAGCTGCAAAACACACACACACACACAATTAAACATGAA  750

seq1  TAACAAAATCTCAGTTTTGATATGTGTTAAGAAATTTTTATAACTTCCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATCTCAGTTTTGATATGTGTTAAGAAATTTTTATAACTTCCGA  800

seq1  GTTTAATTCCCTACCATTTTAGCCATGTTACTTTCTTATCTTTTTCTA-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTAATTCCCTACCATTTTAGCCATGTTACTTTCTTATCTTTTTCTATT  850

seq1  GATGATCTCCCCCAACCCCCA-CCCCTACCCCCACATGGAAATTTCA-TT  897
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GATGATCTCCCCCAACCCCCACCCCCTACCCCCACATGGAAATTTCATTT  900

seq1  CCCTGTAGTTCAAAAGGGAAGTTTGT-ATTTCTCACACTCTAACCAGC-A  945
      |||||||| ||||||||||||||||| |||||||||||||||| |||| |
seq2  CCCTGTAG-TCAAAAGGGAAGTTTGTAATTTCTCACACTCTAAACAGCTA  949

seq1  GAGGGCAACAG-TGCATTGTGTACTAGCCCCCTCCCCCCTTCACCCAATG  994
        ||||||||| |||||||||| |||  ||||| |||||||||| |||||
seq2  AGGGGCAACAGTTGCATTGTGTTCTATGCCCCT-CCCCCTTCACTCAATG  998

seq1  GACGCA-TTTCCCAGAAGTCTTTCTGTGAAC  1024
      |||||| |||||||||||   ||||||||||
seq2  GACGCATTTTCCCAGAAGGTCTTCTGTGAAC  1029