BAC Information

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BAC

Clone NameB6Ng01-350O02
Chromosome16 (Build37)
Map Location 58,729,691 - 58,730,893
singlet/doubletsinglet
Overlap geneCldnd1
Upstream geneCol8a1, LOC435480, LOC629342, LOC100043477, Dcbld2, St3gal6, LOC100043480, Gm813, E330017A01Rik, Cpox, LOC100043790, Gpr15
Downstream geneOlfr172, Olfr173, Olfr174, Olfr178, Olfr180, Olfr1563-ps1, Olfr181, Olfr182-ps1, Olfr183, Olfr185-ps1, Olfr186, Olfr187, Olfr188-ps1, Olfr189-ps1, Olfr190, Olfr191, Olfr192, Olfr193, Olfr1540-ps1, Olfr194, Olfr195, Olfr196, Olfr197, Olfr198, Olfr199, Olfr200-ps1, Olfr201, Olfr202, Olfr203, Olfr204, Olfr205, GA_x5J8B7U0478-6-340, Olfr206, Olfr207, Gabrr3, LOC100043803, Mina, BC043118, LOC672884, Arl6, Epha6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350O02.bB6Ng01-350O02.g
ACCGA131421GA131422
length1,1851,164
definitionB6Ng01-350O02.b B6Ng01-350O02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtgactcgaataaaatcgcctgggaagatttcctcggtgacg
aggcggatgagaagacttacaacgatgttctgttccgatacaacggcagc
ttggggctgtggagacggtgcatcaccatacccaaaaacactcactggta
tgcgccaccggaaaggacaggtacgtcctttacgtcctaataatgatggc
ccagtgacgtgcaagcttgtctgtgcttccttcccctaagaaagtcttct
gcatctgttttattcctatcattgtcttgcctcaacttccgtgcaatccc
attgtccccgatgataccacggcacctcatattgtgatcaacacttgaat
cctcatacttatttgccaattaaattgttttttattcatgccacatgtca
cgaggaattcgcttgaacagttgaaatatttgacagtttgtggtattcaa
aatcaagtcagaatgtgagttgcagaatcaagtcaaactgtgagttgatt
gccctcttacagttagctatgttagccaggcggcagtggcacaagccttt
aatcccagcactccgagggcagagacaggtgaatctctctgaattgaggc
cagcctggtctaccgagcaagatccaggacagtcagggctatgcagagaa
gctctgactctctcataaagcaaacaaaaccaaaaatgattacctatttt
atagtaggtttccatcatttgccttgtattttagagaatgtaatttgacc
aactctgcctttaaatctgtacatatttgagacttgtacaactataacga
gttaataacctaaacaaaattacagaagaatctaagttgtctctcagaat
tattcttcaaaaattctatcaacacaaagactttaattttcaagtattaa
attagaaagtttacagtttatttttgttatatttacttcttttgggcctt
tcactgagtagcactgtattcaaatcatagcagatcacgcttaagtttca
tctattaaaagataccagatctgaaagtagttaacattcaagaaagggac
acagctgcagttgtattgtaaacttcgtcataggcagagacatctgtcag
ggttggagcgggtaccattcgaagaggaaagcctgaactttgtcctggcc
aattctaacatggctatggtcagctatcagcttgg
gaattccacataaaaccagagcattgaaacttatagaggagaaagtgggg
aaaagcctcgaagatatgggtacagggggaaaattcctgaatagaacagc
aatggcttgtgctgtaagatcaagaatcgataaatgggacctcataaaat
tgcaaagcttccgtcaataagacagaaagaccaccaatagattaggaaag
gatctttacctatcccaaatcggataggggactaatatcaaatatatata
aagaactcaagaaggtgggctccagaaaatcgaataaccccattaaaaaa
tggggctcagagctgaacaaagaattctcacttgaggaataccgaatggc
agagaaacacctgaaaaaaatgttcaacatccttaatcatcagggaaatg
caaatcaaaacaacactgagattccacctcacaccagtcagaatggctaa
gatcaaaaattcaggtgacagcagatgctggaaagaggaacactcctcca
ttgttggtgggattgcaagcttgtacaaccactctggaaatcagtctgga
ggttcctcagaaaattggacacagtactactggaggatcctgcaatacct
ctcctggcatatatccagaagatgttccaactggtaagaaggacacatgt
tccactatgtttcatagcagccttatttataatagccagaagctggaaag
aacccaggtgcccctcaacagaggaatggatacagaaaatatggtacatt
tacacaatggagtactactcagctattaaaaagaatgaatttatggaatt
cctaggcaaatggttggacctggagggcatcatcctgagtgaggtaacac
aatcacaaaagaactcaaatgaatatgtactcactgattaagtgaatatt
agcccaagaaacttagtatacccaagatattagaatacaattttgcaaaa
acacattgaaactgaagaagaacgaaaccaaagttgtgaaccctttgccc
ccttctagaaatgggaaaatccacccatgggtaagggagttacagaaaac
aaagttttggagctgagacaaatgtatggatcctagtaagagactgtcat
attccgagggattctatccataatcagcctctcaatcgttttaatcattt
gtcattcaccttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_58729691_58730893
seq2: B6Ng01-350O02.b_45_1229

seq1  GAATTCAAGTGACTCGAATAAAATCGCCTGGGAAGATTTCCTCGGTGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTGACTCGAATAAAATCGCCTGGGAAGATTTCCTCGGTGACG  50

seq1  AGGCGGATGAGAAGACTTACAACGATGTTCTGTTCCGATACAACGGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGATGAGAAGACTTACAACGATGTTCTGTTCCGATACAACGGCAGC  100

seq1  TTGGGGCTGTGGAGACGGTGCATCACCATACCCAAAAACACTCACTGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGTGGAGACGGTGCATCACCATACCCAAAAACACTCACTGGTA  150

seq1  TGCGCCACCGGAAAGGACAGGTACGTCCTTTACGTCCTAATAATGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCACCGGAAAGGACAGGTACGTCCTTTACGTCCTAATAATGATGGC  200

seq1  CCAGTGACGTGCAAGCTTGTCTGTGCTTCCTTCCCCTAAGAAAGTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACGTGCAAGCTTGTCTGTGCTTCCTTCCCCTAAGAAAGTCTTCT  250

seq1  GCATCTGTTTTATTCCTATCATTGTCTTGCCTCAACTTCCGTGCAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTTTTATTCCTATCATTGTCTTGCCTCAACTTCCGTGCAATCCC  300

seq1  ATTGTCCCCGATGATACCACGGCACCTCATATTGTGATCAACACTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCCCGATGATACCACGGCACCTCATATTGTGATCAACACTTGAAT  350

seq1  CCTCATACTTATTTGCCAATTAAATTGTTTTTTATTCATGCCACATGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACTTATTTGCCAATTAAATTGTTTTTTATTCATGCCACATGTCA  400

seq1  CGAGGAATTCGCTTGAACAGTTGAAATATTTGACAGTTTGTGGTATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAATTCGCTTGAACAGTTGAAATATTTGACAGTTTGTGGTATTCAA  450

seq1  AATCAAGTCAGAATGTGAGTTGCAGAATCAAGTCAAACTGTGAGTTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTCAGAATGTGAGTTGCAGAATCAAGTCAAACTGTGAGTTGATT  500

seq1  GCCCTCTTACAGTTAGCTATGTTAGCCAGGCGGCAGTGGCACAAGCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTACAGTTAGCTATGTTAGCCAGGCGGCAGTGGCACAAGCCTTT  550

seq1  AATCCCAGCACTCCGAGGGCAGAGACAGGTGAATCTCTCTGAATTGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTCCGAGGGCAGAGACAGGTGAATCTCTCTGAATTGAGGC  600

seq1  CAGCCTGGTCTACCGAGCAAGATCCAGGACAGTCAGGGCTATGCAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACCGAGCAAGATCCAGGACAGTCAGGGCTATGCAGAGAA  650

seq1  GCTCTGACTCTCTCATAAAGCAAACAAAACCAAAAATGATTACCTATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACTCTCTCATAAAGCAAACAAAACCAAAAATGATTACCTATTTT  700

seq1  ATAGTAGGTTTCCATCATTTGCCTTGTATTTTAGAGAATGTAATTTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGGTTTCCATCATTTGCCTTGTATTTTAGAGAATGTAATTTGACC  750

seq1  AACTCTGCCTTTAAATCTGTACATATTTGAGACTTGTACAACTATAACGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGCCTTTAAATCTGTACATATTTGAGACTTGTACAACTATAACGA  800

seq1  GTTAATAACCTAAACAAAATTACAGAAGAATCTAAGTTGTCTCTCAGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAACCTAAACAAAATTACAGAAGAATCTAAGTTGTCTCTCAGAAT  850

seq1  TATTCTTCAAAAATTCTATCAACACAAAGACTTTAATTTTTCAAGTATTA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTCTTCAAAAATTCTATCAACACAAAGACTTTAA-TTTTCAAGTATTA  899

seq1  AATTAGAAAGTTTACAGTTTATTTTTGTTTATATTTACTTCTTTT-GGCC  949
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AATTAGAAAGTTTACAGTTTATTTTTG-TTATATTTACTTCTTTTGGGCC  948

seq1  TTTCACTGAGTAAGCACTGTATTCAAATCATAGCAGAACACGCTTAAGTT  999
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TTTCACTGAGT-AGCACTGTATTCAAATCATAGCAGATCACGCTTAAGTT  997

seq1  TCCATCTATTAAAAGGAATACCAGATCTGAAAAGTAGGTTTACATTCAAA  1049
      | |||||||||||||  |||||||||||| |||||| ||| |||||| ||
seq2  T-CATCTATTAAAAG--ATACCAGATCTG-AAAGTA-GTTAACATTC-AA  1041

seq1  GAAAGGGAACACAGCTGCAG-TGTATTGTAAAACCTCCGGTTCATAAGCA  1098
      ||||||| |||||||||||| |||||||||||  || ||  ||||| |||
seq2  GAAAGGG-ACACAGCTGCAGTTGTATTGTAAA--CTTCG--TCATAGGCA  1086

seq1  GAGACATCCTGGCA-GGTGTGAGCGGGACACATCCGAAGAGGAGAG-CTG  1146
      ||||||| ||| || |||  |||||||   ||| ||||||||| || |||
seq2  GAGACAT-CTGTCAGGGTTGGAGCGGGTACCATTCGAAGAGGAAAGCCTG  1135

seq1  -ACCTTGTCACTGGCTCATATCTAAACCCATGGGCATAGTGCAAGGCTAT  1195
       || ||||| ||||| ||  |||||   |||||  || || ||  |||||
seq2  AACTTTGTC-CTGGC-CAATTCTAA---CATGGCTATGGT-CA--GCTAT  1177

seq1  CAGCTTGG  1203
      ||||||||
seq2  CAGCTTGG  1185