BAC Information

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BAC

Clone NameMSMg01-045A04
Chromosome16 (Build37)
Map Location 25,499,196 - 25,499,311
singlet/doubletsinglet
Overlap genenone
Upstream geneLpp, A730098P11Rik, 5430420C16Rik
Downstream geneTrp63, LOC100043571, Leprel1, Cldn1, Cldn16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045A04.T7 (MSMg01no045_a04.b1)MSMg01-045A04.TJ (MSMg01no045_a04.g1)
ACCAG275749AG275750
length765762
length of high quality
(start - end)
263 (113 - 375)116 (195 - 310)
definitionCHROMAT_FILE: MSMg01no045_a04.b1 PHD_FILE: MSMg01no045_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:51 2005CHROMAT_FILE: MSMg01no045_a04.g1 PHD_FILE: MSMg01no045_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNCCCCCCNNNNNNNNNNNNNNNNNNTTT
TGGTCGTCGTANNNCATCTATAATTGCGGTCGCTAAACGACTCCTATTTC
AAGAGAGAGCCGCGGAATTCTTCATGATTCCCGCACATCCTGAAGATGGC
TGAGACATCCAGGATTGTAGCCTGGATTCTTAGACCTTTTTTGGAAAACA
GCCATAGTTGGACTAGCTGAATCACACAGGCTATAGGCCATTCAAATCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCATTCTGTAAATTCTG
TTCTCATACAGAACCCTGATTATCAAAACCATAATCCTCACATTTCACTG
GAGTCTGTTTTAATGAAGCCATCTTCATTTCAATTTCATTAATTTGGCCC
TTCTTTCTTTCAGTTGGTTAGTTTGGGAAACTATTTGTGGATATCCTTTA
TAGTCAGCCTTCCCTCAGTGTCTAACTATGTTAACCATGCCACACATGAC
CCGCTACATAGTCCAGTGCTGTATTTTTATCTCCGGTAAACTGCCTGACC
CCTGCCTGCCCGAGCATATACTTTCTTAGGCAGGAAGTGGATTCATTTCG
TATGTTATACAACATTTTATATGTATTTGTAATATAAATCCCGTGGCTTA
ACTAGATACATCTGGAATTGTCGGTCCACACTACCCAGCTGCCATTAATT
TCCAATTCTGCTACA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTACA
AANNTNCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTGAGAAG
AGGTGACCTATAGAATTTCCCGCGAAATTCATGATCACTAACAGGAACTG
ATGCCACCTTGCTTCTTGCCAAAGGGCTGGGGAAGACAAGAGGGATGGAG
TATAGTCAGGGAGTCATTTTCTTTACTACTGTAACTGATGGTAAGTTATT
CATACTTCAGGAAATAAGCTCCAATCATACCCAGATGAACAAACTCAATT
AAACCAAGCAGGGCATAAACCAATGAAAGTAGGAAAAAGAGCAGCTGGGA
AGCTGGACATCAAAAGGAGTGAGGGGAGATTATAGAGGGTAATAGCTGTG
CATATGATCACAATATATTGTACATGCATATGACTTTCTAACAAAGACGC
TAAATCATCATATACCATAATTCAACCTAGGGAAAAACATCTAGAGATCT
CCCACATGCTATTCCTCTAGTTTATTCCCACCTCACTACCTTGATTTATT
TGGCTCGAATTAAAATGCTCAATTAACCTCTTTGGGCCGCAAAACACCCA
AACCTTTTTTTTTTAAAGGTATTGATCCTTGGAACTTGGTCACACTTTTG
TGGGGGTATAACCGCCATCCAGGTTCCTCTACTTCTTGAAGACCCCATCT
TTGGCACTCTCTTCCAAGCTTGTGCAATCCCACAACTGAATTCCTCGGTA
GAAAACCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_a04.g1 MSMg01no045_a04.g1 CHROMAT_FILE:
MSMg01no045_a04.g1 PHD_FILE: MSMg01no045_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:51 2005
         (116 letters)



>mm_chr16_25498996_25499511
          Length = 516

 Score =  209 bits (108), Expect = 5e-59
 Identities = 114/116 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggagtatagtcagggagtcattttctttactactgtaactgatggtaagttattcata 60
           |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 316 atggagtacagtcagggagtcattttctttactactgtaactaatggtaagttattcata 257

                                                                   
Query: 61  cttcaggaaataagctccaatcatacccagatgaacaaactcaattaaaccaagca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cttcaggaaataagctccaatcatacccagatgaacaaactcaattaaaccaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)